Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p028357 Quercus lobata HOM05D000027 ORTHO05D337898 6.4e-117 424.1 212 100.0
QL04p028436 Quercus lobata HOM05D000027 ORTHO05D001163 8.3e-24 114.8 65 89.2
QL04p028385 Quercus lobata HOM05D000027 ORTHO05D001163 1.4e-23 114.0 64 87.5
QL04p028352 Quercus lobata HOM05D000027 ORTHO05D001163 1.6e-22 110.5 64 84.4
Cfa011765 Carpinus fangiana HOM05D000027 ORTHO05D001163 2.4e-15 86.7 84 57.1
Haze_24400 Corylus avellana HOM05D000027 ORTHO05D001163 1.7e-13 80.5 68 57.4
Cfa011763 Carpinus fangiana HOM05D000027 ORTHO05D001163 1.1e-12 77.8 68 58.8
Cfa011766 Carpinus fangiana HOM05D000027 ORTHO05D001163 3.3e-12 76.3 63 61.9
CiPaw.13G070300 Carya illinoinensis HOM05D000027 ORTHO05D001163 3.3e-12 76.3 76 56.6
QL01p040121 Quercus lobata HOM05D000027 ORTHO05D001163 5.6e-12 75.5 78 56.4
Haze_24402 Corylus avellana HOM05D000027 ORTHO05D001163 3.6e-11 72.8 55 61.8
Haze_24399 Corylus avellana HOM05D000027 ORTHO05D001163 6.1e-11 72.0 66 59.1
CiPaw.13G070900 Carya illinoinensis HOM05D000027 ORTHO05D001163 1.0e-10 71.2 68 54.4
Dinv19193 Davidia involucrata HOM05D000027 ORTHO05D001163 1.4e-10 70.9 68 54.4
Sabra16G0175400 Salix brachista HOM05D000027 ORTHO05D001134 1.8e-10 70.5 121 40.5
GSVIVG01024656001 Vitis vinifera HOM05D000027 ORTHO05D001163 2.3e-10 70.1 68 55.9
QL01p026502 Quercus lobata HOM05D000027 ORTHO05D001163 4.0e-10 69.3 81 51.9
CiPaw.13G070500 Carya illinoinensis HOM05D000027 ORTHO05D001163 5.2e-10 68.9 63 55.6
MSTRG.18846 Avicennia marina HOM05D000027 ORTHO05D001163 8.9e-10 68.2 67 52.2
Rhsim01G0240500 Rhododendron simsii HOM05D000027 ORTHO05D001163 8.9e-10 68.2 69 52.2
Haze_14002 Corylus avellana HOM05D000027 ORTHO05D001163 1.2e-09 67.8 76 53.9
MD11G1062600 Malus domestica HOM05D000027 ORTHO05D001163 1.2e-09 67.8 68 52.9
CiPaw.13G071500 Carya illinoinensis HOM05D000027 ORTHO05D001163 1.5e-09 67.4 68 48.5
Ciclev10028356m.g Citrus clementina HOM05D000027 ORTHO05D001163 1.5e-09 67.4 85 45.9
Duzib168G0915 Durio zibethinus HOM05D000027 ORTHO05D001163 2.6e-09 66.6 69 47.8
vmacro14617 Vaccinium macrocarpon HOM05D000027 ORTHO05D001163 3.4e-09 66.2 69 47.8
Dinv19194 Davidia involucrata HOM05D000027 ORTHO05D001163 4.4e-09 65.9 76 50.0
Sabra09G0059000 Salix brachista HOM05D000027 ORTHO05D001163 5.7e-09 65.5 64 53.1
TAR623G0320 Trochodendron aralioides HOM05D000150 ORTHO05D001163 5.7e-09 65.5 68 50.0
CiPaw.13G070800 Carya illinoinensis HOM05D000150 ORTHO05D001163 7.5e-09 65.1 76 48.7
Haze_14014 Corylus avellana HOM05D000027 ORTHO05D001163 7.5e-09 65.1 63 57.1
QL01p026726 Quercus lobata HOM05D000027 ORTHO05D001163 7.5e-09 65.1 64 56.2
Cfa021491 Carpinus fangiana HOM05D000027 ORTHO05D001163 9.8e-09 64.7 64 56.2
Rhsim01G0240400 Rhododendron simsii HOM05D000027 ORTHO05D001163 9.8e-09 64.7 68 52.9
Sabra09G0058900 Salix brachista HOM05D000027 ORTHO05D001163 9.8e-09 64.7 64 53.1
Eucgr.B03993 Eucalyptus grandis HOM05D000027 ORTHO05D001163 1.3e-08 64.3 78 46.2
Prupe.6G049600 Prunus persica HOM05D000027 ORTHO05D001163 1.3e-08 64.3 72 52.8
Sabra16G0175300 Salix brachista HOM05D000027 ORTHO05D001163 1.3e-08 64.3 68 51.5
CSS0045733 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D001163 1.7e-08 63.9 69 49.3
Ca_05646_v3 Cicer arietinum L. HOM05D000027 ORTHO05D001163 1.7e-08 63.9 75 45.3
Hma1.2p1_0226F.1_g095600 Hydrangea macrophylla HOM05D000027 ORTHO05D001163 1.7e-08 63.9 68 47.1
Lalb_Chr15g0083201 Lupinus albus HOM05D000027 ORTHO05D001163 1.7e-08 63.9 76 52.6
MD11G1062800 Malus domestica HOM05D000027 ORTHO05D001163 1.7e-08 63.9 69 50.7
Potri.001G281900 Populus trichocarpa HOM05D000027 ORTHO05D001163 2.2e-08 63.5 63 55.6
Dinv28690 Davidia involucrata HOM05D000027 ORTHO05D001163 2.9e-08 63.2 68 51.5
Duzib168G0458 Durio zibethinus HOM05D000027 ORTHO05D001163 2.9e-08 63.2 65 52.3
Eucgr.B03996 Eucalyptus grandis HOM05D000027 ORTHO05D001163 2.9e-08 63.2 78 44.9
TPR.G35613 Trifolium pratense HOM05D000027 ORTHO05D001163 2.9e-08 63.2 76 52.6
arahy.Tifrunner.gnm1.ann1.7WR3XG Arachis hypogaea HOM05D000027 ORTHO05D001163 3.7e-08 62.8 74 45.9
Cc01_g14770 Coffea canephora HOM05D000150 ORTHO05D001163 3.7e-08 62.8 62 54.8
FvH4_3g39580 Fragaria vesca HOM05D000027 ORTHO05D001163 3.7e-08 62.8 69 53.6
Haze_24404 Corylus avellana HOM05D000027 ORTHO05D001163 4.9e-08 62.4 68 50.0
QL01p026685 Quercus lobata HOM05D000150 ORTHO05D001163 4.9e-08 62.4 63 54.0
Thecc.09G356300 Theobroma cacao HOM05D000027 ORTHO05D001163 4.9e-08 62.4 68 55.9
CSS0002066 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D001163 6.4e-08 62.0 76 47.4
Ciclev10028375m.g Citrus clementina HOM05D000027 ORTHO05D001163 6.4e-08 62.0 70 47.1
COL.COLO4_11136 Corchorus olitorius HOM05D000027 ORTHO05D001163 6.4e-08 62.0 63 55.6
Gorai.013G271100 Gossypium raimondii HOM05D000027 ORTHO05D001163 6.4e-08 62.0 62 59.7
Medtr5g072860 Medicago truncatula HOM05D000027 ORTHO05D001163 6.4e-08 62.0 75 45.3
Potri.001G281800 Populus trichocarpa HOM05D000027 ORTHO05D001163 6.4e-08 62.0 68 47.1
Cfa011769 Carpinus fangiana HOM05D000027 ORTHO05D001163 8.3e-08 61.6 68 50.0
Gohir.A13G234600 Gossypium hirsutum HOM05D000027 ORTHO05D001163 8.3e-08 61.6 62 59.7
Psat6g111640 Pisum sativum HOM05D000027 ORTHO05D001163 8.3e-08 61.6 76 46.1
RcHm_v2.0_Chr5g0071341 Rosa chinensis HOM05D000027 ORTHO05D001163 8.3e-08 61.6 69 50.7
GSVIVG01024649001 Vitis vinifera HOM05D000027 ORTHO05D001163 8.3e-08 61.6 92 43.5
arahy.Tifrunner.gnm1.ann1.A8YQ06 Arachis hypogaea HOM05D000027 ORTHO05D001163 1.1e-07 61.2 74 44.6
Cfa011768 Carpinus fangiana HOM05D000027 ORTHO05D001163 1.1e-07 61.2 76 50.0
FAN16G1934 Fragaria x ananassa HOM05D000150 ORTHO05D001163 1.1e-07 61.2 68 47.1
Gohir.A13G234400 Gossypium hirsutum HOM05D000027 ORTHO05D001163 1.1e-07 61.2 75 41.3
QL01p026472 Quercus lobata HOM05D000027 ORTHO05D001163 1.1e-07 61.2 64 50.0
Thecc.09G356500 Theobroma cacao HOM05D000027 ORTHO05D001163 1.1e-07 61.2 68 45.6
arahy.Tifrunner.gnm1.ann1.L8F1YU Arachis hypogaea HOM05D000027 ORTHO05D001163 1.4e-07 60.8 67 43.3
DCAR_018225 Daucus carota HOM05D000027 ORTHO05D001163 1.4e-07 60.8 64 54.7
Gohir.D13G240200 Gossypium hirsutum HOM05D000027 ORTHO05D001163 1.4e-07 60.8 62 58.1
Prupe.6G050000 Prunus persica HOM05D000027 ORTHO05D001163 1.4e-07 60.8 72 51.4
Rhsim13G0046300 Rhododendron simsii HOM05D000027 ORTHO05D001163 1.4e-07 60.8 82 41.5
Actinidia23862 Actinidia chinensis HOM05D000027 ORTHO05D001163 1.8e-07 60.5 69 46.4
Lalb_Chr17g0345361 Lupinus albus HOM05D000027 ORTHO05D001163 1.8e-07 60.5 75 44.0
Potri.009G077200 Populus trichocarpa HOM05D000027 ORTHO05D001163 1.8e-07 60.5 84 44.0
TAR623G0391 Trochodendron aralioides HOM05D000027 ORTHO05D001163 1.8e-07 60.5 76 44.7
Duzib168G0930 Durio zibethinus HOM05D000027 ORTHO05D001163 2.4e-07 60.1 68 51.5
Gorai.013G270900 Gossypium raimondii HOM05D000027 ORTHO05D001163 2.4e-07 60.1 75 41.3
MD11G1062700 Malus domestica HOM05D000027 ORTHO05D001163 2.4e-07 60.1 69 46.4
RcHm_v2.0_Chr5g0071331 Rosa chinensis HOM05D000027 ORTHO05D001163 2.4e-07 60.1 68 50.0
TPR.G29709 Trifolium pratense HOM05D000027 ORTHO05D001163 2.4e-07 60.1 75 44.0
Eucgr.B00411 Eucalyptus grandis HOM05D000027 ORTHO05D001163 3.2e-07 59.7 79 43.0
FvH4_3g39570 Fragaria vesca HOM05D000027 ORTHO05D001163 3.2e-07 59.7 69 47.8
Gohir.A05G108700 Gossypium hirsutum HOM05D000150 ORTHO05D001163 3.2e-07 59.7 68 48.5
MD11G1062400 Malus domestica HOM05D000150 ORTHO05D001163 3.2e-07 59.7 75 45.3
arahy.Tifrunner.gnm1.ann1.G24X58 Arachis hypogaea HOM05D000027 ORTHO05D001163 4.1e-07 59.3 67 43.3
Lalb_Chr04g0252011 Lupinus albus HOM05D000027 ORTHO05D001163 4.1e-07 59.3 75 44.0
Nn2g10989 Nelumbo nucifera HOM05D000027 ORTHO05D001163 4.1e-07 59.3 64 48.4
Prupe.6G050100 Prunus persica HOM05D000027 ORTHO05D001163 4.1e-07 59.3 72 48.6
Lj2A1092T49 Lonicera japonica HOM05D000027 ORTHO05D001163 5.4e-07 58.9 68 45.6
Lj2C1092T2 Lonicera japonica HOM05D000150 ORTHO05D001163 5.4e-07 58.9 68 45.6
Nitab4.5_0007880g0090 Nicotiana tabacum HOM05D000027 ORTHO05D001163 5.4e-07 58.9 62 53.2
Oeu037386.1 Olea europaea HOM05D000027 ORTHO05D001163 5.4e-07 58.9 80 45.0
QL01p026641 Quercus lobata HOM05D000150 ORTHO05D001163 5.4e-07 58.9 64 53.1
FAN21G3237 Fragaria x ananassa HOM05D000150 ORTHO05D001163 7.0e-07 58.5 68 45.6
Medtr3g031400 Medicago truncatula HOM05D000027 ORTHO05D001163 7.0e-07 58.5 76 51.3
QL04p028346 Quercus lobata HOM05D000027 ORTHO05D001163 7.0e-07 58.5 38 71.1
Thecc.09G356400 Theobroma cacao HOM05D000027 ORTHO05D001163 7.0e-07 58.5 68 47.1
vmacro14619 Vaccinium macrocarpon HOM05D000027 ORTHO05D001163 7.0e-07 58.5 81 42.0
LjContig00141g0005074 Lotus japonicus HOM05D000027 ORTHO05D001163 9.2e-07 58.2 76 46.1
Eucgr.B00409 Eucalyptus grandis HOM05D000027 ORTHO05D001163 1.2e-06 57.8 80 42.5
FvH4_3g39560 Fragaria vesca HOM05D000150 ORTHO05D001163 1.2e-06 57.8 68 44.1
FAN21G0949 Fragaria x ananassa HOM05D000027 ORTHO05D001163 1.2e-06 57.8 69 49.3
Gohir.D05G108800 Gossypium hirsutum HOM05D000027 ORTHO05D001163 1.2e-06 57.8 68 50.0
Oeu040715.1 Olea europaea HOM05D000027 ORTHO05D001163 1.2e-06 57.8 76 43.4
Glyma.14G198600 Glycine max HOM05D000027 ORTHO05D001163 1.6e-06 57.4 75 40.0
Gorai.009G113100 Gossypium raimondii HOM05D000027 ORTHO05D001163 1.6e-06 57.4 68 50.0
Lsat_1_v5_gn_5_180440 Lactuca sativa HOM05D000027 ORTHO05D001163 1.6e-06 57.4 70 42.9
Lalb_Chr04g0252001 Lupinus albus HOM05D000027 ORTHO05D001163 1.6e-06 57.4 75 48.0
Potri.009G077500 Populus trichocarpa HOM05D000027 ORTHO05D001163 1.6e-06 57.4 64 50.0
PGR102G0279 Punica granatum HOM05D000027 ORTHO05D001163 2.0e-06 57.0 64 50.0
QL06p039079 Quercus lobata HOM05D002862 ORTHO05D003198 2.0e-06 57.0 71 52.1
Thecc.09G356700 Theobroma cacao HOM05D000027 ORTHO05D001163 2.0e-06 57.0 62 51.6
arahy.Tifrunner.gnm1.ann1.ZN78HF Arachis hypogaea HOM05D000150 ORTHO05D001163 2.7e-06 56.6 76 48.7
Cfa011764 Carpinus fangiana HOM05D000027 ORTHO05D001163 2.7e-06 56.6 56 50.0
HanXRQChr11g0320921 Helianthus annuus HOM05D000027 ORTHO05D001163 2.7e-06 56.6 63 49.2
QL06p000862 Quercus lobata HOM05D000003 ORTHO05D000004 2.7e-06 56.6 71 52.1
COL.COLO4_11135 Corchorus olitorius HOM05D000027 ORTHO05D001163 3.5e-06 56.2 66 42.4
DCAR_018226 Daucus carota HOM05D000027 ORTHO05D001163 3.5e-06 56.2 68 44.1
Eucgr.B00404 Eucalyptus grandis HOM05D000027 ORTHO05D001163 3.5e-06 56.2 82 40.2
Lsat_1_v5_gn_5_174540 Lactuca sativa HOM05D000027 ORTHO05D001163 3.5e-06 56.2 64 48.4
Lj6g0025451 Lotus japonicus HOM05D000150 ORTHO05D001163 3.5e-06 56.2 66 53.0
MBI13_g07386_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D001163 3.5e-06 56.2 63 47.6
CANSAT54G2756 Cannabis sativa HOM05D000027 ORTHO05D001163 4.6e-06 55.8 75 45.3
Eucgr.B00406 Eucalyptus grandis HOM05D000027 ORTHO05D001163 4.6e-06 55.8 81 40.7
Glyma.02G230900 Glycine max HOM05D000027 ORTHO05D001163 4.6e-06 55.8 75 42.7
Glyma.11G164600 Glycine max HOM05D000150 ORTHO05D001163 4.6e-06 55.8 77 48.1
MD11G1062300 Malus domestica HOM05D000027 ORTHO05D001163 4.6e-06 55.8 68 48.5
Potri.001G282100 Populus trichocarpa HOM05D000027 ORTHO05D001163 4.6e-06 55.8 82 42.7
QL09p053117 Quercus lobata HOM05D000003 ORTHO05D000004 4.6e-06 55.8 64 54.7
SGA_v2.0_scaffold6G03480 Striga asiatica HOM05D000027 ORTHO05D001163 4.6e-06 55.8 67 46.3
GSVIVG01024653001 Vitis vinifera HOM05D000027 ORTHO05D001163 4.6e-06 55.8 80 43.8
GSVIVG01024655001 Vitis vinifera HOM05D000027 ORTHO05D001163 4.6e-06 55.8 71 46.5
Actinidia30069 Actinidia chinensis HOM05D000027 ORTHO05D001163 5.9e-06 55.5 62 50.0
Hma1.2p1_0110F.1_g052710 Hydrangea macrophylla HOM05D000027 ORTHO05D001163 5.9e-06 55.5 62 53.2
Manes.12G131900 Manihot esculenta HOM05D000027 ORTHO05D001163 5.9e-06 55.5 66 43.9
Prupe.6G050200 Prunus persica HOM05D000027 ORTHO05D001163 5.9e-06 55.5 70 44.3
Hund05030 Selenicereus undatus HOM05D000027 ORTHO05D001163 5.9e-06 55.5 69 47.8
vmacro00349 Vaccinium macrocarpon HOM05D000150 ORTHO05D001163 5.9e-06 55.5 84 42.9
CANSAT54G1727 Cannabis sativa HOM05D000027 ORTHO05D001163 7.8e-06 55.1 79 43.0
Gohir.D13G240000 Gossypium hirsutum HOM05D000150 ORTHO05D001163 7.8e-06 55.1 68 47.1
Lalb_Chr20g0114711 Lupinus albus HOM05D000027 ORTHO05D001163 7.8e-06 55.1 67 46.3
Sopen02g017320 Solanum pennellii HOM05D000027 ORTHO05D001163 7.8e-06 55.1 65 46.2
vmacro14618 Vaccinium macrocarpon HOM05D000150 ORTHO05D001163 7.8e-06 55.1 69 46.4
VMungo0647G1931 Vigna mungo HOM05D000027 ORTHO05D001163 7.8e-06 55.1 74 40.5


User provided reference genes

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