Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 1.4e-50 202.6 97 100.0
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 1.1e-36 156.4 90 83.3
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 1.1e-36 156.4 90 83.3
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 4.0e-26 121.3 85 65.9
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 9.9e-25 116.7 93 61.3
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 4.9e-24 114.4 88 63.6
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 8.4e-24 113.6 94 59.6
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 1.4e-23 112.8 88 63.6
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 1.4e-23 112.8 93 59.1
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 2.4e-23 112.1 87 60.9
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 3.2e-23 111.7 93 59.1
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.2e-23 111.7 87 60.9
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 3.2e-23 111.7 92 57.6
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 5.5e-23 110.9 87 60.9
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.2e-22 109.8 85 61.2
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 2.1e-22 109.0 87 59.8
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 7.9e-22 107.1 96 52.1
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 3.0e-21 105.1 98 51.0
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 5.6e-20 100.9 99 54.5
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 9.6e-20 100.1 98 48.0
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 9.6e-20 100.1 93 50.5
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 9.6e-20 100.1 93 52.7
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 2.1e-19 99.0 95 53.7
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 8.2e-19 97.1 90 55.6
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 8.2e-19 97.1 93 50.5
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 1.1e-18 96.7 95 46.3
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 2.4e-18 95.5 89 50.6
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.4e-18 95.5 91 53.8
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.4e-18 95.5 91 53.8
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 3.1e-18 95.1 94 52.1
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 5.3e-18 94.4 96 46.9
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 6.9e-18 94.0 96 46.9
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 1.5e-17 92.8 93 50.5
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 1.5e-17 92.8 93 50.5
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 2.0e-17 92.4 90 51.1
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 2.6e-17 92.0 93 48.4
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 3.4e-17 91.7 90 46.7
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 3.4e-17 91.7 93 48.4
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 3.4e-17 91.7 90 48.9
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 5.8e-17 90.9 92 54.3
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.0e-16 90.1 93 45.2
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 1.0e-16 90.1 92 48.9
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 1.3e-16 89.7 92 44.6
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 1.3e-16 89.7 84 48.8
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.7e-16 89.4 93 46.2
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 2.9e-16 88.6 92 42.4
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 3.8e-16 88.2 91 44.0
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 3.8e-16 88.2 99 44.4
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 4.9e-16 87.8 97 43.3
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 6.5e-16 87.4 99 46.5
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 6.5e-16 87.4 91 42.9
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 6.5e-16 87.4 97 43.3
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 8.4e-16 87.0 93 47.3
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 8.4e-16 87.0 93 47.3
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 8.4e-16 87.0 93 49.5
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.1e-15 86.7 92 45.7
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 4.2e-15 84.7 90 47.8
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 5.5e-15 84.3 98 49.0
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 9.3e-15 83.6 90 42.2
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 9.3e-15 83.6 98 46.9
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 9.3e-15 83.6 96 39.6
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 9.3e-15 83.6 100 45.0
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 1.6e-14 82.8 85 44.7
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 1.6e-14 82.8 101 43.6
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 2.1e-14 82.4 84 46.4
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 3.5e-14 81.6 90 43.3
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 3.5e-14 81.6 94 45.7
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 3.5e-14 81.6 90 42.2
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 7.9e-14 80.5 95 40.0
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 7.9e-14 80.5 90 47.8
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 1.0e-13 80.1 95 47.4
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 1.3e-13 79.7 96 44.8
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 1.3e-13 79.7 88 46.6
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 1.3e-13 79.7 88 46.6
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 1.3e-13 79.7 90 42.2
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 3.0e-13 78.6 87 41.4
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 3.9e-13 78.2 89 40.4
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 5.1e-13 77.8 94 42.6
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 8.7e-13 77.0 87 46.0
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 1.1e-12 76.6 91 47.3
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 4.3e-12 74.7 89 44.9
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 4.3e-12 74.7 89 43.8
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 5.7e-12 74.3 91 47.3
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 5.7e-12 74.3 91 47.3
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 5.7e-12 74.3 91 47.3
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 9.7e-12 73.6 91 46.2
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 4.8e-11 71.2 92 42.4
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 1.1e-10 70.1 91 46.2
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 1.8e-10 69.3 89 42.7
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 3.1e-10 68.6 85 41.2
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 4.1e-10 68.2 91 44.0
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 4.1e-10 68.2 97 41.2
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 1.5e-09 66.2 88 39.8
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 2.0e-09 65.9 85 40.0
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 2.6e-09 65.5 94 39.4
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 2.6e-09 65.5 81 40.7
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 5.9e-09 64.3 56 44.6
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 7.6e-09 63.9 90 38.9
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 2.1e-06 55.8 54 44.4


User provided reference genes

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