Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p027198 Quercus lobata HOM05D000005 ORTHO05D010574 4.7e-224 780.8 370 100.0
QL04p027745 Quercus lobata HOM05D000005 ORTHO05D010574 7.2e-124 448.0 366 64.5
QL04p027112 Quercus lobata HOM05D000005 ORTHO05D010574 3.0e-122 442.6 394 56.9
QL04p027395 Quercus lobata HOM05D000083 ORTHO05D001732 1.5e-121 440.3 401 58.9
QL04p027472 Quercus lobata HOM05D000005 ORTHO05D010574 9.4e-116 421.0 487 47.0
QL04p027572 Quercus lobata HOM05D000056 ORTHO05D000019 3.8e-101 372.5 367 55.3
QL04p027067 Quercus lobata HOM05D000083 ORTHO05D001732 1.2e-99 367.5 399 51.9
Haze_17731 Corylus avellana HOM05D000005 ORTHO05D010574 5.4e-95 352.1 372 50.0
Cfa018270 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.2e-86 324.3 396 45.7
QL04p028127 Quercus lobata HOM05D000005 ORTHO05D010574 5.0e-85 318.9 217 73.7
Haze_17813 Corylus avellana HOM05D000005 ORTHO05D010574 1.4e-82 310.8 397 44.8
Haze_17817 Corylus avellana HOM05D000005 ORTHO05D010574 2.8e-75 286.6 379 42.5
Haze_17819 Corylus avellana HOM05D000005 ORTHO05D010574 4.3e-60 236.1 322 45.3
Haze_17730 Corylus avellana HOM05D000005 ORTHO05D010574 3.1e-58 229.9 371 37.5
Haze_17818 Corylus avellana HOM05D000005 ORTHO05D010574 3.5e-54 216.5 268 45.9
QL05p082212 Quercus lobata HOM05D000005 ORTHO05D010574 5.1e-53 212.6 389 35.2
Haze_17828 Corylus avellana HOM05D000005 ORTHO05D010574 1.1e-50 204.9 267 44.9
QL09p004694 Quercus lobata HOM05D000005 ORTHO05D010574 2.0e-49 200.7 356 37.1
Cfa018268 Carpinus fangiana HOM05D000005 ORTHO05D010574 5.4e-47 192.6 215 48.4
Cfa011656 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.3e-43 181.4 375 30.9
Cfa018271 Carpinus fangiana HOM05D000005 ORTHO05D010574 5.3e-42 176.0 292 40.8
RcHm_v2.0_Chr4g0429711 Rosa chinensis HOM05D000005 ORTHO05D010574 2.2e-40 170.6 369 32.8
MD12G1068700 Malus domestica HOM05D000005 ORTHO05D010574 6.7e-37 159.1 374 31.3
CANSAT01G0874 Cannabis sativa HOM05D000005 ORTHO05D000012 1.4e-34 151.4 375 28.8
QL09p004668 Quercus lobata HOM05D000005 ORTHO05D010574 1.4e-34 151.4 352 30.4
QL09p003267 Quercus lobata HOM05D000005 ORTHO05D010574 4.0e-34 149.8 146 49.3
Cfa008053 Carpinus fangiana HOM05D000005 ORTHO05D010574 7.1e-31 139.0 198 37.9
Cfa018269 Carpinus fangiana HOM05D000005 ORTHO05D010574 7.1e-31 139.0 356 29.8
QL09p003167 Quercus lobata HOM05D000005 ORTHO05D010574 7.1e-31 139.0 315 31.7
QL04p027965 Quercus lobata HOM05D000005 ORTHO05D010574 4.6e-30 136.3 351 27.9
QL03p068834 Quercus lobata HOM05D000005 ORTHO05D010574 1.4e-26 124.8 373 27.9
Prupe.7G065400 Prunus persica HOM05D000005 ORTHO05D000012 3.1e-26 123.6 435 26.7
Haze_24261 Corylus avellana HOM05D000005 ORTHO05D010574 4.5e-25 119.8 229 33.2
Cfa011658 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.3e-24 118.2 172 34.9
RcHm_v2.0_Chr1g0317981 Rosa chinensis HOM05D000005 ORTHO05D010574 1.7e-24 117.9 175 35.4
RcHm_v2.0_Chr6g0251631 Rosa chinensis HOM05D000005 ORTHO05D012233 3.2e-23 113.6 369 24.7
Cfa011655 Carpinus fangiana HOM05D000005 ORTHO05D010574 4.2e-23 113.2 220 31.4
MD05G1002200 Malus domestica HOM05D000005 ORTHO05D010574 2.3e-21 107.5 365 27.4
QL09p003102 Quercus lobata HOM05D000005 ORTHO05D010574 1.6e-19 101.3 157 34.4
CANSAT78G1597 Cannabis sativa HOM05D000005 ORTHO05D010574 1.5e-17 94.7 186 29.0
CiPaw.16G076400 Carya illinoinensis HOM05D000005 ORTHO05D010574 7.7e-17 92.4 141 40.4
ClCG08G001380 Citrullus lanatus HOM05D000005 ORTHO05D014598 7.7e-17 92.4 374 24.3
QL03p063704 Quercus lobata HOM05D000005 ORTHO05D010574 7.7e-17 92.4 173 30.6
CsaV3_5G039740 Cucumis sativus L. HOM05D000005 ORTHO05D014598 1.0e-16 92.0 374 23.0
CANSAT78G2183 Cannabis sativa HOM05D000005 ORTHO05D010574 1.7e-16 91.3 383 24.3
MELO3C025516.2 Cucumis melo HOM05D000005 ORTHO05D014598 2.9e-16 90.5 379 23.5
RcHm_v2.0_Chr7g0223661 Rosa chinensis HOM05D000005 ORTHO05D000012 2.5e-15 87.4 368 25.0
QL04p028099 Quercus lobata HOM05D000005 ORTHO05D010574 4.2e-15 86.7 360 26.1
RcHm_v2.0_Chr6g0251641 Rosa chinensis HOM05D000005 ORTHO05D000012 9.4e-15 85.5 281 22.1
RcHm_v2.0_Chr1g0342551 Rosa chinensis HOM05D000005 ORTHO05D010574 2.1e-14 84.3 179 27.9
Cfa012834 Carpinus fangiana HOM05D000005 ORTHO05D010574 2.7e-14 84.0 160 30.0
FvH4_1g16620 Fragaria vesca HOM05D000005 ORTHO05D012233 3.6e-14 83.6 361 24.4
MD17G1192900 Malus domestica HOM05D000005 ORTHO05D000012 3.6e-14 83.6 357 23.0
RcHm_v2.0_Chr6g0272741 Rosa chinensis HOM05D000005 ORTHO05D000012 1.4e-13 81.6 385 24.7
MD05G1002400 Malus domestica HOM05D000005 ORTHO05D012870 1.8e-13 81.3 262 25.2
RcHm_v2.0_Chr7g0240641 Rosa chinensis HOM05D000005 ORTHO05D012870 3.0e-13 80.5 359 25.3
FAN15G3532 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.8e-13 79.0 370 23.5
Prupe.8G005200 Prunus persica HOM05D000005 ORTHO05D000012 1.5e-12 78.2 158 32.3
ClCG08G001360 Citrullus lanatus HOM05D000005 ORTHO05D010574 2.5e-12 77.4 142 30.3
RcHm_v2.0_Chr4g0429701 Rosa chinensis HOM05D000005 ORTHO05D000012 2.5e-12 77.4 183 25.7
Cfa011657 Carpinus fangiana HOM05D000005 ORTHO05D010574 3.3e-12 77.0 220 26.4
Sed0009572 Sechium edule HOM05D000005 ORTHO05D014598 4.3e-12 76.6 142 31.7
MD10G1006400 Malus domestica HOM05D000005 ORTHO05D000012 7.4e-12 75.9 173 30.6
FAN23G0394 Fragaria x ananassa HOM05D000005 ORTHO05D012233 3.7e-11 73.6 191 27.2
RcHm_v2.0_Chr2g0106511 Rosa chinensis HOM05D000005 ORTHO05D012233 3.7e-11 73.6 193 25.9
RcHm_v2.0_Chr2g0106541 Rosa chinensis HOM05D000005 ORTHO05D012233 6.3e-11 72.8 193 26.4
FAN19G0622 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.1e-10 72.0 191 26.2
FAN23G1303 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.8e-10 71.2 191 26.2
FAN28G2233 Fragaria x ananassa HOM05D000005 ORTHO05D012233 4.1e-10 70.1 188 26.6
QL04p027735 Quercus lobata HOM05D000005 ORTHO05D000012 4.1e-10 70.1 195 28.2
FAN26G1463 Fragaria x ananassa HOM05D000005 ORTHO05D012233 5.3e-10 69.7 191 27.2
FAN26G2122 Fragaria x ananassa HOM05D000005 ORTHO05D012233 5.3e-10 69.7 191 27.2
QL04p027246 Quercus lobata HOM05D000005 ORTHO05D000012 5.3e-10 69.7 195 27.7
ClCG08G001330 Citrullus lanatus HOM05D000005 ORTHO05D010574 9.1e-10 68.9 159 27.0
FAN19G0289 Fragaria x ananassa HOM05D000005 ORTHO05D012233 9.1e-10 68.9 191 26.7
FAN28G1466 Fragaria x ananassa HOM05D000005 ORTHO05D012233 9.1e-10 68.9 195 26.7
QL04p026662 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-09 68.6 195 27.7
QL04p027378 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-09 68.6 195 27.7
RcHm_v2.0_Chr2g0124621 Rosa chinensis HOM05D000005 ORTHO05D012233 1.2e-09 68.6 203 26.1
MELO3C022152.2 Cucumis melo HOM05D000005 ORTHO05D014598 3.4e-09 67.0 148 29.1
QL03p063806 Quercus lobata HOM05D000005 ORTHO05D000012 7.7e-09 65.9 158 26.6
FAN06G4743 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.9e-08 63.9 185 26.5
CiPaw.16G015500 Carya illinoinensis HOM05D000005 ORTHO05D010574 3.8e-08 63.5 154 28.6
Manes.02G199800 Manihot esculenta HOM05D000005 ORTHO05D000012 8.5e-08 62.4 178 27.0
Cfa018274 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.1e-07 62.0 71 40.8
QL04p027557 Quercus lobata HOM05D000005 ORTHO05D000012 1.1e-07 62.0 189 27.0
FAN13G2383 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.9e-07 61.2 364 23.1
RcHm_v2.0_Chr1g0328941 Rosa chinensis HOM05D000005 ORTHO05D001748 1.9e-07 61.2 156 26.9
CsaV3_5G039730 Cucumis sativus L. HOM05D000005 ORTHO05D014598 7.2e-07 59.3 117 29.9
GSVIVG01025878001 Vitis vinifera HOM05D000005 ORTHO05D000012 2.1e-06 57.8 142 28.2
Sed0004955 Sechium edule HOM05D000005 ORTHO05D019022 2.7e-06 57.4 183 23.0
FAN04G2194 Fragaria x ananassa HOM05D000005 ORTHO05D012870 3.6e-06 57.0 158 25.3
RcHm_v2.0_Chr1g0329001 Rosa chinensis HOM05D000005 ORTHO05D000012 3.6e-06 57.0 156 26.9
GSVIVG01004873001 Vitis vinifera HOM05D000005 ORTHO05D000012 7.9e-06 55.8 143 26.6


User provided reference genes

Program Settings