Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p026751 Quercus lobata HOM05D001380 ORTHO05D001912 7.8e-42 173.3 85 100.0
QL04p026136 Quercus lobata HOM05D001380 ORTHO05D001912 1.7e-28 129.0 69 94.2
Haze_02904 Corylus avellana HOM05D001380 ORTHO05D001912 4.3e-24 114.4 85 69.4
CiPaw.14G016600 Carya illinoinensis HOM05D001380 ORTHO05D001912 4.8e-23 110.9 85 68.2
CiPaw.13G021900 Carya illinoinensis HOM05D001380 ORTHO05D001912 1.5e-21 105.9 85 65.9
TAR372G0006 Trochodendron aralioides HOM05D001380 ORTHO05D001912 6.0e-18 94.0 70 65.7
TAR636G0007 Trochodendron aralioides HOM05D001380 ORTHO05D001912 7.9e-18 93.6 85 60.0
TAR353G0004 Trochodendron aralioides HOM05D001380 ORTHO05D001912 1.3e-17 92.8 70 64.3
Duzib133G1380 Durio zibethinus HOM05D001380 ORTHO05D001912 1.8e-17 92.4 85 58.8
Cpa.g.sc52.67 Carica papaya HOM05D001380 ORTHO05D001912 2.3e-17 92.0 85 57.6
Atru.chr5.41 Acer truncatum HOM05D001380 ORTHO05D001912 3.9e-17 91.3 88 60.2
Atru.chr5.71 Acer truncatum HOM05D001380 ORTHO05D001912 3.9e-17 91.3 88 60.2
Manes.05G058700 Manihot esculenta HOM05D001380 ORTHO05D001912 3.9e-17 91.3 85 57.6
TAR375G0543 Trochodendron aralioides HOM05D001380 ORTHO05D001912 6.7e-17 90.5 85 57.6
MD02G1225300 Malus domestica HOM05D001380 ORTHO05D001912 1.1e-16 89.7 72 69.4
Potri.014G044000 Populus trichocarpa HOM05D001380 ORTHO05D001912 1.9e-16 89.0 85 61.2
Ciclev10022877m.g Citrus clementina HOM05D001380 ORTHO05D001912 2.5e-16 88.6 85 61.2
Aqoxy3G02556 Aquilegia oxysepala HOM05D001380 ORTHO05D001912 5.7e-16 87.4 85 55.3
PGR042G1389 Punica granatum HOM05D001380 ORTHO05D001912 5.7e-16 87.4 86 53.5
MD07G1088600 Malus domestica HOM05D001380 ORTHO05D001912 7.4e-16 87.0 88 58.0
CANSAT25G0268 Cannabis sativa HOM05D001380 ORTHO05D001912 1.3e-15 86.3 87 56.3
Potri.002G135600 Populus trichocarpa HOM05D001380 ORTHO05D001912 1.3e-15 86.3 85 56.5
Sabra14G0031900 Salix brachista HOM05D001380 ORTHO05D001912 1.6e-15 85.9 85 58.8
Nn1g00651 Nelumbo nucifera HOM05D001380 ORTHO05D001912 2.2e-15 85.5 85 56.5
COL.COLO4_12350 Corchorus olitorius HOM05D001380 ORTHO05D001912 2.8e-15 85.1 85 55.3
Prupe.2G115500 Prunus persica HOM05D001380 ORTHO05D001912 2.8e-15 85.1 89 58.4
Sabra02G0105400 Salix brachista HOM05D001380 ORTHO05D001912 2.8e-15 85.1 85 56.5
MELO3C006265.2 Cucumis melo HOM05D001380 ORTHO05D001912 3.7e-15 84.7 85 55.3
CsaV3_3G010410 Cucumis sativus L. HOM05D001380 ORTHO05D001912 3.7e-15 84.7 85 56.5
Duzib268G1163 Durio zibethinus HOM05D001380 ORTHO05D001912 3.7e-15 84.7 85 56.5
Dinv43588 Davidia involucrata HOM05D001380 ORTHO05D001912 6.3e-15 84.0 85 55.3
TWI14G0244 Tripterygium wilfordii HOM05D001380 ORTHO05D001912 8.2e-15 83.6 85 55.3
ClCG05G002860 Citrullus lanatus HOM05D001380 ORTHO05D001912 1.1e-14 83.2 85 55.3
Dinv44020 Davidia involucrata HOM05D001380 ORTHO05D001912 1.1e-14 83.2 85 55.3
PSO063G6587 Papaver somniferum HOM05D001380 ORTHO05D001912 1.1e-14 83.2 85 56.5
Thecc.01G402700 Theobroma cacao HOM05D001380 ORTHO05D001912 1.1e-14 83.2 85 55.3
Duzib138G1852 Durio zibethinus HOM05D001380 ORTHO05D001912 1.4e-14 82.8 85 52.9
Phvul.008G051000 Phaseolus vulgaris HOM05D001380 ORTHO05D001912 1.4e-14 82.8 85 52.9
Ca_08026_v3 Cicer arietinum L. HOM05D001380 ORTHO05D001912 1.8e-14 82.4 85 58.8
Actinidia21610 Actinidia chinensis HOM05D001380 ORTHO05D001912 3.1e-14 81.6 85 54.1
Glyma.09G247100 Glycine max HOM05D001380 ORTHO05D001912 3.1e-14 81.6 85 52.9
Glyma.18G245900 Glycine max HOM05D001380 ORTHO05D001912 3.1e-14 81.6 85 52.9
RcHm_v2.0_Chr1g0344041 Rosa chinensis HOM05D001380 ORTHO05D001912 3.1e-14 81.6 89 56.2
GSVIVG01018372001 Vitis vinifera HOM05D001380 ORTHO05D001912 3.1e-14 81.6 85 54.1
Medtr7g080760 Medicago truncatula HOM05D001380 ORTHO05D001912 4.1e-14 81.3 85 56.5
Sed0020181 Sechium edule HOM05D001380 ORTHO05D001912 4.1e-14 81.3 69 62.3
PSO782G0310 Papaver somniferum HOM05D001380 ORTHO05D001912 6.9e-14 80.5 85 54.1
Aa31LG1G26170 Aethionema arabicum HOM05D001380 ORTHO05D001912 9.0e-14 80.1 85 51.8
Eucgr.E01706 Eucalyptus grandis HOM05D001380 ORTHO05D001912 9.0e-14 80.1 91 50.5
Lalb_Chr03g0040741 Lupinus albus HOM05D001380 ORTHO05D001912 1.2e-13 79.7 85 51.8
HPP92_011315 Vanilla planifolia HOM05D001380 ORTHO05D001912 1.2e-13 79.7 84 50.0
BcaB02g08838 Brassica carinata HOM05D001380 ORTHO05D001912 1.5e-13 79.3 85 54.1
Gohir.A08G056100 Gossypium hirsutum HOM05D001380 ORTHO05D001912 1.5e-13 79.3 86 53.5
TPR.G28215 Trifolium pratense HOM05D001380 ORTHO05D001912 1.5e-13 79.3 85 56.5
Oeu034854.1 Olea europaea HOM05D001380 ORTHO05D001912 3.4e-13 78.2 85 50.6
vmacro21088 Vaccinium macrocarpon HOM05D001380 ORTHO05D001912 3.4e-13 78.2 85 52.9
Lj1g0012093 Lotus japonicus HOM05D001380 ORTHO05D001912 4.5e-13 77.8 85 51.8
Thhalv10001683m.g Eutrema salsugineum HOM05D001380 ORTHO05D001912 7.7e-13 77.0 85 51.8
arahy.Tifrunner.gnm1.ann1.LYA50U Arachis hypogaea HOM05D001380 ORTHO05D001912 1.0e-12 76.6 70 60.0
Lalb_Chr19g0126301 Lupinus albus HOM05D001380 ORTHO05D001912 1.0e-12 76.6 85 51.8
THA.LOC104817176 Tarenaya hassleriana HOM05D001380 ORTHO05D001912 1.0e-12 76.6 85 54.1
arahy.Tifrunner.gnm1.ann1.S1U0T7 Arachis hypogaea HOM05D001380 ORTHO05D001912 1.3e-12 76.3 70 58.6
Sp4g26710 Schrenkiella parvula HOM05D001380 ORTHO05D001912 1.3e-12 76.3 85 51.8
TWI59G0169 Tripterygium wilfordii HOM05D001380 ORTHO05D001912 1.3e-12 76.3 86 54.7
CDE08G1217 Ceratophyllum demersum HOM05D001380 ORTHO05D001912 2.2e-12 75.5 85 51.8
FAN01G0176 Fragaria x ananassa HOM05D001380 ORTHO05D001912 2.2e-12 75.5 89 55.1
Gohir.D08G065400 Gossypium hirsutum HOM05D001380 ORTHO05D001912 2.2e-12 75.5 86 51.2
Gorai.004G067700 Gossypium raimondii HOM05D001380 ORTHO05D001912 2.2e-12 75.5 86 51.2
MBI15_g00868_MAGBIO Magnolia biondii HOM05D001380 ORTHO05D001912 2.2e-12 75.5 82 56.1
Carub.0004s2717 Capsella rubella HOM05D001380 ORTHO05D001912 2.9e-12 75.1 85 54.1
FvH4_7g08760 Fragaria vesca HOM05D001380 ORTHO05D001912 2.9e-12 75.1 89 53.9
FAN06G1502 Fragaria x ananassa HOM05D001380 ORTHO05D001912 2.9e-12 75.1 89 53.9
FAN10G0378 Fragaria x ananassa HOM05D001380 ORTHO05D001912 2.9e-12 75.1 89 53.9
FAN10G3503 Fragaria x ananassa HOM05D001380 ORTHO05D001912 2.9e-12 75.1 89 53.9
CsaV3_3G010400 Cucumis sativus L. HOM05D001380 ORTHO05D001912 3.8e-12 74.7 85 51.8
FAN03G2771 Fragaria x ananassa HOM05D001380 ORTHO05D001912 3.8e-12 74.7 90 54.4
THA.LOC104802507 Tarenaya hassleriana HOM05D001380 ORTHO05D001912 3.8e-12 74.7 85 51.8
AT2G44620 Arabidopsis thaliana HOM05D001380 ORTHO05D001912 5.0e-12 74.3 85 52.9
A05p04770 Brassica napus HOM05D001380 ORTHO05D001912 5.0e-12 74.3 85 50.6
MELO3C006264.2 Cucumis melo HOM05D001380 ORTHO05D001912 5.0e-12 74.3 85 51.8
MBI02_g32969_MAGBIO Magnolia biondii HOM05D001380 ORTHO05D001912 5.0e-12 74.3 87 52.9
MBI03_g02277_MAGBIO Magnolia biondii HOM05D001380 ORTHO05D001912 5.0e-12 74.3 71 62.0
Psat3g101240 Pisum sativum HOM05D001380 ORTHO05D001912 5.0e-12 74.3 85 52.9
VMungo1383G1021 Vigna mungo HOM05D001380 ORTHO05D001912 5.0e-12 74.3 85 47.1
CARHR139840 Cardamine hirsuta HOM05D001380 ORTHO05D001912 6.5e-12 73.9 85 54.1
MBI14_g36711_MAGBIO Magnolia biondii HOM05D001380 ORTHO05D001912 6.5e-12 73.9 87 52.9
BolC4t22188H Brassica oleracea HOM05D001380 ORTHO05D001912 8.5e-12 73.6 85 49.4
BcaC02g12289 Brassica carinata HOM05D001380 ORTHO05D001912 1.1e-11 73.2 85 49.4
C04p05580 Brassica napus HOM05D001380 ORTHO05D001912 1.1e-11 73.2 85 49.4
MBI14_g46624_MAGBIO Magnolia biondii HOM05D001380 ORTHO05D001912 1.1e-11 73.2 87 52.9
unitig_26.g8861 Utricularia gibba HOM05D001380 ORTHO05D001912 1.1e-11 73.2 83 48.2
Migut.B01485 Erythranthe guttata HOM05D001380 ORTHO05D001912 1.4e-11 72.8 78 50.0
Gorai.001G222600 Gossypium raimondii HOM05D001380 ORTHO05D001912 1.4e-11 72.8 71 56.3
SalBow4G1172 Salvia bowleyana HOM05D001380 ORTHO05D001912 1.9e-11 72.4 84 50.0
Oeu024388.1 Olea europaea HOM05D001380 ORTHO05D001912 2.5e-11 72.0 84 47.6
MSTRG.4962 Avicennia marina HOM05D001380 ORTHO05D001912 3.2e-11 71.6 87 47.1
SGA_v2.0_scaffold52G19269 Striga asiatica HOM05D001380 ORTHO05D001912 3.2e-11 71.6 87 48.3
BraA05t19453Z Brassica rapa HOM05D001380 ORTHO05D001912 4.2e-11 71.2 85 48.2
MBI19_g40363_MAGBIO Magnolia biondii HOM05D001380 ORTHO05D001912 4.2e-11 71.2 78 55.1
unitig_750.g28404 Utricularia gibba HOM05D001380 ORTHO05D001912 1.2e-10 69.7 83 47.0
Migut.O00570 Erythranthe guttata HOM05D001380 ORTHO05D001912 2.1e-10 68.9 84 44.0
Lsat_1_v5_gn_4_38561 Lactuca sativa HOM05D001380 ORTHO05D001912 2.1e-10 68.9 86 48.8
CDE08G0390 Ceratophyllum demersum HOM05D001380 ORTHO05D001912 2.7e-10 68.6 85 48.2
DCAR_025023 Daucus carota HOM05D001380 ORTHO05D001912 2.7e-10 68.6 85 48.2
Cc02_g25650 Coffea canephora HOM05D001380 ORTHO05D001912 3.6e-10 68.2 85 48.2
MELO3C006263.2 Cucumis melo HOM05D001380 ORTHO05D001912 3.6e-10 68.2 85 49.4
HanXRQChr12g0383301 Helianthus annuus HOM05D001380 ORTHO05D001912 4.6e-10 67.8 86 48.8
Peaxi162Scf00745g00014 Petunia axillaris HOM05D001380 ORTHO05D001912 4.6e-10 67.8 85 47.1
A03p24830 Brassica napus HOM05D001380 ORTHO05D001912 6.1e-10 67.4 85 49.4
BraA03t11690Z Brassica rapa HOM05D001380 ORTHO05D001912 6.1e-10 67.4 85 49.4
Nitab4.5_0005034g0040 Nicotiana tabacum HOM05D001380 ORTHO05D001912 7.9e-10 67.0 87 47.1
Sc26g0001770 Simmondsia chinensis HOM05D001380 ORTHO05D001912 7.9e-10 67.0 84 45.2
Sopen01g035430 Solanum pennellii HOM05D001380 ORTHO05D001912 7.9e-10 67.0 87 46.0
AUR62023365 Chenopodium quinoa HOM05D001380 ORTHO05D001912 1.4e-09 66.2 86 48.8
DCAR_015779 Daucus carota HOM05D001380 ORTHO05D001912 1.4e-09 66.2 87 46.0
Rhsim01G0144200 Rhododendron simsii HOM05D001380 ORTHO05D001912 1.4e-09 66.2 76 52.6
CAN.G756.15 Capsicum annuum HOM05D001380 ORTHO05D001912 1.8e-09 65.9 84 45.2
Solyc01g088570.3 Solanum lycopersicum HOM05D001380 ORTHO05D001912 1.8e-09 65.9 87 44.8
SGA_v2.0_scaffold578G53028 Striga asiatica HOM05D001380 ORTHO05D001912 1.8e-09 65.9 71 50.7
C03p29610 Brassica napus HOM05D001380 ORTHO05D001912 2.3e-09 65.5 85 48.2
BolC3t15310H Brassica oleracea HOM05D001380 ORTHO05D001912 2.3e-09 65.5 85 48.2
Nitab4.5_0004088g0070 Nicotiana tabacum HOM05D001380 ORTHO05D001912 2.3e-09 65.5 71 53.5
PGSC0003DMG400001685 Solanum tuberosum HOM05D001380 ORTHO05D001912 2.3e-09 65.5 84 46.4
AUR62013790 Chenopodium quinoa HOM05D001380 ORTHO05D001912 3.0e-09 65.1 86 47.7
SalBow5G4074 Salvia bowleyana HOM05D001380 ORTHO05D001912 3.9e-09 64.7 84 47.6
Hund27420 Selenicereus undatus HOM05D001380 ORTHO05D001912 3.9e-09 64.7 85 45.9
CsaV3_3G010390 Cucumis sativus L. HOM05D001380 ORTHO05D001912 1.9e-08 62.4 85 47.1
ECA234G0322 Erigeron canadensis HOM05D001380 ORTHO05D001912 4.3e-08 61.2 86 45.3
SEGI_26097 Sequoiadendron giganteum HOM05D001380 ORTHO05D001912 5.7e-08 60.8 69 47.8
Ah.05g177640 Amaranthus hybridus HOM05D001380 ORTHO05D001912 1.3e-07 59.7 86 47.7
EL10Ac1g00713 Beta vulgaris HOM05D001380 ORTHO05D001912 2.8e-07 58.5 84 45.2
Oeu037411.1 Olea europaea HOM05D001380 ORTHO05D001912 5.3e-06 54.3 83 41.0


User provided reference genes

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