Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p026366 Quercus lobata HOM05D003311 ORTHO05D003707 3.7e-54 214.5 103 100.0
QL04p095545 Quercus lobata HOM05D003311 ORTHO05D003707 4.9e-30 134.4 69 91.3
QL09p030113 Quercus lobata HOM05D003311 ORTHO05D003707 9.2e-29 130.2 69 91.3
QL11p047628 Quercus lobata HOM05D003311 ORTHO05D003707 3.3e-26 121.7 67 82.1
Potri.009G129900 Populus trichocarpa HOM05D003311 ORTHO05D003707 5.4e-21 104.4 64 73.4
CiPaw.06G125100 Carya illinoinensis HOM05D003311 ORTHO05D003707 1.6e-20 102.8 67 70.1
Potri.004G168600 Populus trichocarpa HOM05D003311 ORTHO05D003707 1.6e-20 102.8 67 68.7
Sabra04G0113000 Salix brachista HOM05D003311 ORTHO05D003707 7.8e-20 100.5 67 68.7
Sabra09G0099300 Salix brachista HOM05D003311 ORTHO05D003707 2.3e-19 99.0 67 64.2
CiPaw.05G077500 Carya illinoinensis HOM05D003311 ORTHO05D003707 3.0e-19 98.6 67 64.2
MD05G1116400 Malus domestica HOM05D003311 ORTHO05D003707 1.1e-18 96.7 68 61.8
Cfa005186 Carpinus fangiana HOM05D003311 ORTHO05D003707 1.5e-18 96.3 58 72.4
Nitab4.5_0013889g0010 Nicotiana tabacum HOM05D003311 ORTHO05D003707 3.3e-18 95.1 67 62.7
Nitab4.5_0000956g0190 Nicotiana tabacum HOM05D003311 ORTHO05D003707 4.3e-18 94.7 67 62.7
Dinv04967 Davidia involucrata HOM05D003311 ORTHO05D003707 7.3e-18 94.0 67 65.7
Lj9A389T67 Lonicera japonica HOM05D003311 ORTHO05D003707 9.6e-18 93.6 67 62.7
GSVIVG01024081001 Vitis vinifera HOM05D003311 ORTHO05D003707 1.6e-17 92.8 69 62.3
Psat7g138320 Pisum sativum HOM05D003311 ORTHO05D003707 2.8e-17 92.0 76 52.6
Peaxi162Scf00538g00520 Petunia axillaris HOM05D003311 ORTHO05D003707 4.8e-17 91.3 67 59.7
Ca_19004_v3 Cicer arietinum L. HOM05D003311 ORTHO05D003707 6.2e-17 90.9 72 56.9
Duzib132G0547 Durio zibethinus HOM05D003311 ORTHO05D003707 6.2e-17 90.9 67 59.7
Duzib052G0176 Durio zibethinus HOM05D003311 ORTHO05D003707 8.1e-17 90.5 67 58.2
DCAR_022953 Daucus carota HOM05D003311 ORTHO05D003707 1.1e-16 90.1 67 56.7
Lj3g0005308 Lotus japonicus HOM05D003311 ORTHO05D003707 1.1e-16 90.1 67 61.2
Prupe.8G160900 Prunus persica HOM05D003311 ORTHO05D003707 1.1e-16 90.1 66 59.1
MD10G1118600 Malus domestica HOM05D003311 ORTHO05D003707 1.8e-16 89.4 68 57.4
TPR.G17164 Trifolium pratense HOM05D003311 ORTHO05D003707 1.8e-16 89.4 67 59.7
TAR628G0207 Trochodendron aralioides HOM05D003311 ORTHO05D003707 1.8e-16 89.4 65 63.1
ClCG02G011360 Citrullus lanatus HOM05D003311 ORTHO05D003707 4.0e-16 88.2 67 56.7
ClCG02G011540 Citrullus lanatus HOM05D003311 ORTHO05D003707 4.0e-16 88.2 67 56.7
DCAR_003701 Daucus carota HOM05D003311 ORTHO05D003707 4.0e-16 88.2 67 55.2
Glyma.04G005400 Glycine max HOM05D003311 ORTHO05D003707 4.0e-16 88.2 67 56.7
Lsat_1_v5_gn_3_45680 Lactuca sativa HOM05D003311 ORTHO05D003707 4.0e-16 88.2 66 59.1
HanXRQChr10g0294871 Helianthus annuus HOM05D003311 ORTHO05D003707 5.3e-16 87.8 66 57.6
Atru.chr5.3230 Acer truncatum HOM05D003311 ORTHO05D003707 6.9e-16 87.4 66 57.6
ClCG02G004300 Citrullus lanatus HOM05D003311 ORTHO05D003707 9.0e-16 87.0 72 51.4
Gorai.012G153300 Gossypium raimondii HOM05D003311 ORTHO05D003707 9.0e-16 87.0 68 57.4
Medtr4g075333 Medicago truncatula HOM05D003311 ORTHO05D003707 9.0e-16 87.0 67 58.2
Haze_02195 Corylus avellana HOM05D003311 ORTHO05D003707 1.2e-15 86.7 50 76.0
CsaV3_2G015730 Cucumis sativus L. HOM05D003311 ORTHO05D003707 1.2e-15 86.7 67 56.7
Thecc.02G066700 Theobroma cacao HOM05D003311 ORTHO05D003707 1.2e-15 86.7 67 56.7
AUR62013087 Chenopodium quinoa HOM05D003311 ORTHO05D003707 2.0e-15 85.9 68 55.9
Gohir.A04G122900 Gossypium hirsutum HOM05D003311 ORTHO05D003707 2.0e-15 85.9 68 57.4
Nn5g29097 Nelumbo nucifera HOM05D003311 ORTHO05D003707 2.0e-15 85.9 65 55.4
RcHm_v2.0_Chr6g0245161 Rosa chinensis HOM05D003311 ORTHO05D003707 2.0e-15 85.9 66 57.6
Gohir.D04G164900 Gossypium hirsutum HOM05D003311 ORTHO05D003707 2.6e-15 85.5 68 55.9
Lalb_Chr01g0001331 Lupinus albus HOM05D003311 ORTHO05D003707 2.6e-15 85.5 67 55.2
Oeu008608.1 Olea europaea HOM05D003311 ORTHO05D003707 2.6e-15 85.5 67 58.2
Oeu010053.1 Olea europaea HOM05D003311 ORTHO05D003707 2.6e-15 85.5 67 56.7
Rhsim11G0187900 Rhododendron simsii HOM05D003311 ORTHO05D003707 2.6e-15 85.5 66 59.1
MELO3C020785.2 Cucumis melo HOM05D003311 ORTHO05D003707 3.4e-15 85.1 67 55.2
Sed0012527 Sechium edule HOM05D003311 ORTHO05D003707 3.4e-15 85.1 66 56.1
PGSC0003DMG400001631 Solanum tuberosum HOM05D003311 ORTHO05D003707 3.4e-15 85.1 67 53.7
CAN.G588.28 Capsicum annuum HOM05D003311 ORTHO05D003707 4.4e-15 84.7 67 53.7
QL05p072824 Quercus lobata HOM05D003311 ORTHO05D008853 4.4e-15 84.7 59 71.2
PGSC0003DMG400001243 Solanum tuberosum HOM05D003311 ORTHO05D003707 4.4e-15 84.7 67 56.7
COL.COLO4_17258 Corchorus olitorius HOM05D003311 ORTHO05D003707 5.8e-15 84.3 66 57.6
Peaxi162Scf00362g00962 Petunia axillaris HOM05D003311 ORTHO05D003707 5.8e-15 84.3 67 53.7
Sopen01g053220 Solanum pennellii HOM05D003311 ORTHO05D003707 5.8e-15 84.3 67 53.7
AUR62010091 Chenopodium quinoa HOM05D003311 ORTHO05D003707 7.6e-15 84.0 65 56.9
Aqoxy5G01798 Aquilegia oxysepala HOM05D003311 ORTHO05D003707 9.9e-15 83.6 65 58.5
HanXRQChr07g0186871 Helianthus annuus HOM05D003311 ORTHO05D003707 9.9e-15 83.6 66 54.5
PGSC0003DMG400004441 Solanum tuberosum HOM05D003311 ORTHO05D003707 9.9e-15 83.6 67 55.2
CSS0033713 Camellia sinensis var. sinensis HOM05D003311 ORTHO05D003707 1.3e-14 83.2 57 63.2
CANSAT25G1598 Cannabis sativa HOM05D003311 ORTHO05D003707 1.3e-14 83.2 58 63.8
Oeu008607.1 Olea europaea HOM05D003311 ORTHO05D003707 1.3e-14 83.2 67 55.2
ECA234G1895 Erigeron canadensis HOM05D003311 ORTHO05D003707 1.7e-14 82.8 67 53.7
ECA246G0279 Erigeron canadensis HOM05D003311 ORTHO05D003707 1.7e-14 82.8 66 50.0
HanXRQChr10g0289061 Helianthus annuus HOM05D003311 ORTHO05D003707 2.2e-14 82.4 67 53.7
Hma1.2p1_4000F.1_g338120 Hydrangea macrophylla HOM05D003311 ORTHO05D003707 2.2e-14 82.4 58 60.3
Actinidia00597 Actinidia chinensis HOM05D003311 ORTHO05D003707 2.9e-14 82.0 66 57.6
FvH4_2g01970 Fragaria vesca HOM05D003311 ORTHO05D003707 2.9e-14 82.0 66 56.1
FAN15G0502 Fragaria x ananassa HOM05D003311 ORTHO05D003707 2.9e-14 82.0 66 56.1
FAN20G1603 Fragaria x ananassa HOM05D003311 ORTHO05D003707 2.9e-14 82.0 66 56.1
FAN27G1129 Fragaria x ananassa HOM05D003311 ORTHO05D003707 2.9e-14 82.0 66 56.1
VMungo1309G0179 Vigna mungo HOM05D003311 ORTHO05D003707 2.9e-14 82.0 67 53.7
Atru.chr5.3229 Acer truncatum HOM05D003311 ORTHO05D003707 3.8e-14 81.6 73 53.4
Sopen10g024820 Solanum pennellii HOM05D003311 ORTHO05D003707 3.8e-14 81.6 67 55.2
Sopen10g024830 Solanum pennellii HOM05D003311 ORTHO05D003707 3.8e-14 81.6 67 53.7
Actinidia20487 Actinidia chinensis HOM05D000144 ORTHO05D003707 4.9e-14 81.3 66 54.5
Duzib099G0001 Durio zibethinus HOM05D003311 ORTHO05D003707 4.9e-14 81.3 67 53.7
Ciclev10029326m.g Citrus clementina HOM05D003311 ORTHO05D003707 6.4e-14 80.9 69 58.0
Phvul.011G026700 Phaseolus vulgaris HOM05D003311 ORTHO05D003707 6.4e-14 80.9 64 56.2
Rhsim05G0063000 Rhododendron simsii HOM05D003311 ORTHO05D003707 6.4e-14 80.9 68 58.8
Sc08g0003160 Simmondsia chinensis HOM05D003311 ORTHO05D003707 6.4e-14 80.9 67 52.2
FAN24G0785 Fragaria x ananassa HOM05D003311 ORTHO05D003707 8.4e-14 80.5 66 54.5
Sed0022693 Sechium edule HOM05D003311 ORTHO05D003707 8.4e-14 80.5 72 48.6
Solyc10g054900.2 Solanum lycopersicum HOM05D003311 ORTHO05D003707 8.4e-14 80.5 67 53.7
HanXRQChr10g0290731 Helianthus annuus HOM05D003311 ORTHO05D003707 1.1e-13 80.1 65 52.3
PSO170G2430 Papaver somniferum HOM05D003311 ORTHO05D003707 1.4e-13 79.7 67 55.2
Hund06406 Selenicereus undatus HOM05D003396 ORTHO05D003646 1.4e-13 79.7 67 50.7
TAR376G0773 Trochodendron aralioides HOM05D003311 ORTHO05D003707 1.4e-13 79.7 66 54.5
Phvul.009G024900 Phaseolus vulgaris HOM05D003311 ORTHO05D003707 1.9e-13 79.3 67 52.2
Hund00043 Selenicereus undatus HOM05D003311 ORTHO05D003707 1.9e-13 79.3 67 52.2
TWI79G0740 Tripterygium wilfordii HOM05D003311 ORTHO05D003707 1.9e-13 79.3 68 54.4
MSTRG.20036 Avicennia marina HOM05D003311 ORTHO05D003707 2.4e-13 79.0 65 58.5
Lalb_Chr03g0024711 Lupinus albus HOM05D003311 ORTHO05D003707 2.4e-13 79.0 67 52.2
PSO700G0002 Papaver somniferum HOM05D003311 ORTHO05D003707 2.4e-13 79.0 67 55.2
Ah.01g009150 Amaranthus hybridus HOM05D003396 ORTHO05D003646 4.2e-13 78.2 67 52.2
TWI75G0647 Tripterygium wilfordii HOM05D003311 ORTHO05D003707 4.2e-13 78.2 68 54.4
GSVIVG01024076001 Vitis vinifera HOM05D003311 ORTHO05D003707 5.4e-13 77.8 65 56.9
Sopen10g024840 Solanum pennellii HOM05D003311 ORTHO05D003707 7.1e-13 77.4 67 53.7
vmacro02251 Vaccinium macrocarpon HOM05D003311 ORTHO05D003707 7.1e-13 77.4 66 56.1
CsaV3_7G000820 Cucumis sativus L. HOM05D000144 ORTHO05D003707 1.2e-12 76.6 72 48.6
MELO3C013376.2 Cucumis melo HOM05D003311 ORTHO05D003707 2.1e-12 75.9 68 47.1
SGA_v2.0_scaffold32G13229 Striga asiatica HOM05D003311 ORTHO05D003707 2.1e-12 75.9 63 52.4
arahy.Tifrunner.gnm1.ann1.6SU9IG Arachis hypogaea HOM05D003311 ORTHO05D003707 2.7e-12 75.5 67 49.3
arahy.Tifrunner.gnm1.ann1.M74JA5 Arachis hypogaea HOM05D003311 ORTHO05D003707 2.7e-12 75.5 67 49.3
Ciclev10028101m.g Citrus clementina HOM05D003311 ORTHO05D003707 2.7e-12 75.5 53 64.2
Manes.11G090200 Manihot esculenta HOM05D003311 ORTHO05D003707 3.5e-12 75.1 51 64.7
Gohir.D01G156000 Gossypium hirsutum HOM05D003311 ORTHO05D003707 4.6e-12 74.7 68 48.5
Gorai.002G193500 Gossypium raimondii HOM05D003311 ORTHO05D003707 4.6e-12 74.7 68 48.5
Oeu046127.1 Olea europaea HOM05D003311 ORTHO05D003707 4.6e-12 74.7 66 48.5
Gohir.A01G164100 Gossypium hirsutum HOM05D003311 ORTHO05D003707 6.0e-12 74.3 68 48.5
MSTRG.5426 Avicennia marina HOM05D003311 ORTHO05D003707 7.8e-12 73.9 68 45.6
MBI09_g00986_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 7.8e-12 73.9 62 51.6
PGR042G2254 Punica granatum HOM05D003311 ORTHO05D003707 1.3e-11 73.2 66 47.0
vmacro17380 Vaccinium macrocarpon HOM05D003311 ORTHO05D003707 1.3e-11 73.2 55 60.0
Lj5A184G34 Lonicera japonica HOM05D003311 ORTHO05D003707 1.7e-11 72.8 54 59.3
Aqoxy5G01799 Aquilegia oxysepala HOM05D003311 ORTHO05D003707 2.3e-11 72.4 66 50.0
CAN.G104.8 Capsicum annuum HOM05D003311 ORTHO05D003707 2.3e-11 72.4 52 59.6
Cpa.g.sc37.189 Carica papaya HOM05D003311 ORTHO05D003707 2.3e-11 72.4 62 56.5
Eucgr.I01377 Eucalyptus grandis HOM05D003311 ORTHO05D003707 2.3e-11 72.4 66 48.5
MSTRG.16857 Avicennia marina HOM05D003311 ORTHO05D003707 3.0e-11 72.0 68 45.6
CSS0038966 Camellia sinensis var. sinensis HOM05D003311 ORTHO05D003707 6.6e-11 70.9 64 54.7
Nn1g05901 Nelumbo nucifera HOM05D003311 ORTHO05D003707 6.6e-11 70.9 65 50.8
MBI05_g46239_MAGBIO Magnolia biondii HOM05D003311 ORTHO05D003707 2.5e-10 68.9 65 47.7
Eucgr.L01869 Eucalyptus grandis HOM05D003311 ORTHO05D003707 3.3e-10 68.6 67 44.8
CDE08G0629 Ceratophyllum demersum HOM05D003311 ORTHO05D003707 5.6e-10 67.8 58 51.7
Oeu046128.1 Olea europaea HOM05D000700 ORTHO05D000397 1.3e-09 66.6 66 48.5
AL7G10640 Arabidopsis lyrata HOM05D003311 ORTHO05D003707 1.6e-09 66.2 51 58.8
unitig_0.g832 Utricularia gibba HOM05D003311 ORTHO05D003707 1.6e-09 66.2 62 48.4
unitig_744.g24265 Utricularia gibba HOM05D003311 ORTHO05D003707 1.6e-09 66.2 69 42.0
CARHR294460 Cardamine hirsuta HOM05D003311 ORTHO05D003707 2.8e-09 65.5 65 47.7
SGA_v2.0_scaffold58G20458 Striga asiatica HOM05D003311 ORTHO05D003707 2.8e-09 65.5 52 55.8
AT4G38770 Arabidopsis thaliana HOM05D003311 ORTHO05D003707 3.6e-09 65.1 65 47.7
SalBow3G2231 Salvia bowleyana HOM05D003311 ORTHO05D003707 3.6e-09 65.1 70 44.3
SalBow6G3538 Salvia bowleyana HOM05D003311 ORTHO05D003707 3.6e-09 65.1 62 51.6
BcaNung01299 Brassica carinata HOM05D003311 ORTHO05D003707 4.8e-09 64.7 68 48.5
C01p00120 Brassica napus HOM05D003311 ORTHO05D003707 4.8e-09 64.7 68 48.5
BolC1t00017H Brassica oleracea HOM05D003311 ORTHO05D003707 4.8e-09 64.7 68 48.5
Thhalv10025123m.g Eutrema salsugineum HOM05D003311 ORTHO05D003707 6.2e-09 64.3 65 44.6
EL10Ac9g21436 Beta vulgaris HOM05D003311 ORTHO05D003707 2.4e-08 62.4 62 50.0
Duzib248G1175 Durio zibethinus HOM05D003311 ORTHO05D003707 2.4e-08 62.4 43 65.1
BcaC01g00253 Brassica carinata HOM05D003311 ORTHO05D003707 3.1e-08 62.0 54 53.7
C03p77310 Brassica napus HOM05D003311 ORTHO05D003707 3.1e-08 62.0 54 53.7
BolC3t19984H Brassica oleracea HOM05D003311 ORTHO05D003707 3.1e-08 62.0 54 53.7
Ciclev10029494m.g Citrus clementina HOM05D003311 ORTHO05D003707 3.1e-08 62.0 60 58.3
SGA_v2.0_scaffold207G41882 Striga asiatica HOM05D003311 ORTHO05D003707 3.1e-08 62.0 69 43.5
GSVIVG01024079001 Vitis vinifera HOM05D003311 ORTHO05D003707 3.1e-08 62.0 44 61.4
A08p24020 Brassica napus HOM05D003311 ORTHO05D003707 4.0e-08 61.6 54 51.9
BraA08t34359Z Brassica rapa HOM05D003311 ORTHO05D003707 4.0e-08 61.6 54 51.9
Sp7g37040 Schrenkiella parvula HOM05D003311 ORTHO05D003707 5.3e-08 61.2 65 44.6
BcaB03g12224 Brassica carinata HOM05D003311 ORTHO05D003707 6.9e-08 60.8 55 50.9
Carub.0007s0062 Capsella rubella HOM05D003311 ORTHO05D003707 6.9e-08 60.8 67 44.8
Zm00001eb026460 Zea mays HOM05D003311 ORTHO05D003707 6.9e-08 60.8 81 33.3
BraA01t00013Z Brassica rapa HOM05D003311 ORTHO05D003707 1.2e-07 60.1 68 45.6
Nitab4.5_0000283g0120 Nicotiana tabacum HOM05D003311 ORTHO05D003707 1.2e-07 60.1 67 40.3
A01p00090 Brassica napus HOM05D003311 ORTHO05D003707 1.5e-07 59.7 60 46.7
ClCG00G004470 Citrullus lanatus HOM05D003311 ORTHO05D003707 1.5e-07 59.7 44 59.1
THA.LOC104824774 Tarenaya hassleriana HOM05D003311 ORTHO05D003707 2.0e-07 59.3 46 54.3
unitig_21.g20802 Utricularia gibba HOM05D003311 ORTHO05D003707 2.0e-07 59.3 58 44.8
ATR0810G037 Amborella trichopoda HOM05D003311 ORTHO05D003707 3.4e-07 58.5 65 36.9
CARHR111970 Cardamine hirsuta HOM05D003311 ORTHO05D003707 5.8e-07 57.8 54 53.7
Aa31LG6G16430 Aethionema arabicum HOM05D003311 ORTHO05D003707 3.8e-06 55.1 64 45.3
AT2G21140 Arabidopsis thaliana HOM05D003311 ORTHO05D003707 3.8e-06 55.1 54 53.7
Oeu010052.1 Olea europaea HOM05D003311 ORTHO05D003707 3.8e-06 55.1 66 37.9
Os10g0149800 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 3.8e-06 55.1 55 43.6
Os10g0150600 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 4.9e-06 54.7 55 43.6
Os10g0150700 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 4.9e-06 54.7 55 43.6
THA.LOC104807787 Tarenaya hassleriana HOM05D003311 ORTHO05D003707 4.9e-06 54.7 53 52.8
Os10g0150400 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 6.4e-06 54.3 55 43.6
AL4G10230 Arabidopsis lyrata HOM05D003311 ORTHO05D003707 8.4e-06 53.9 52 53.8
Os10g0150800 Oryza sativa ssp. japonica HOM05D003311 ORTHO05D003707 8.4e-06 53.9 55 43.6


User provided reference genes

Program Settings