Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 4.4e-33 144.1 74 100.0
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 3.0e-21 104.8 69 79.7
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 3.0e-21 104.8 69 79.7
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.6e-19 99.0 69 76.8
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 4.8e-19 97.4 69 72.5
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 1.1e-18 96.3 69 72.5
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.4e-18 95.9 69 75.4
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 1.4e-18 95.9 69 72.5
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 2.4e-18 95.1 72 70.8
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 6.9e-18 93.6 70 72.9
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.2e-17 92.8 72 69.4
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.5e-17 92.4 69 71.0
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 2.6e-17 91.7 72 69.4
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 3.4e-17 91.3 69 72.5
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 9.9e-17 89.7 69 65.2
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 9.9e-17 89.7 70 71.4
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 1.3e-16 89.4 70 71.4
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 1.7e-16 89.0 69 69.6
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.7e-16 89.0 69 69.6
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.7e-16 89.0 69 68.1
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.7e-16 89.0 69 68.1
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 2.2e-16 88.6 69 65.2
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.9e-16 88.2 69 68.1
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.9e-16 88.2 69 63.8
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 3.8e-16 87.8 67 64.2
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 3.8e-16 87.8 70 70.0
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 4.9e-16 87.4 69 65.2
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 8.4e-16 86.7 70 70.0
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 1.4e-15 85.9 69 66.7
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 1.4e-15 85.9 73 68.5
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.4e-15 85.9 69 62.3
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 1.9e-15 85.5 69 62.3
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 2.4e-15 85.1 70 61.4
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 3.2e-15 84.7 69 62.3
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 3.2e-15 84.7 69 65.2
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 4.2e-15 84.3 69 62.3
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 5.4e-15 84.0 70 67.1
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 7.1e-15 83.6 70 65.7
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 9.3e-15 83.2 70 70.0
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 9.3e-15 83.2 69 65.2
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 9.3e-15 83.2 69 65.2
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.2e-14 82.8 67 67.2
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 1.6e-14 82.4 69 65.2
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.6e-14 82.4 69 60.9
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 2.1e-14 82.0 70 65.7
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 2.7e-14 81.6 69 65.2
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 3.5e-14 81.3 70 62.9
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 3.5e-14 81.3 69 59.4
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 4.6e-14 80.9 67 64.2
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 4.6e-14 80.9 69 60.9
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 6.0e-14 80.5 69 60.9
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 7.9e-14 80.1 70 60.0
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 7.9e-14 80.1 72 63.9
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 1.0e-13 79.7 70 67.1
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 1.3e-13 79.3 70 62.9
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.8e-13 79.0 69 60.9
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 1.8e-13 79.0 69 59.4
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 2.3e-13 78.6 72 62.5
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.3e-13 78.6 69 59.4
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 2.3e-13 78.6 71 62.0
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 2.3e-13 78.6 69 60.9
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 3.0e-13 78.2 70 64.3
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 3.0e-13 78.2 71 62.0
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 3.0e-13 78.2 70 61.4
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 3.0e-13 78.2 70 65.7
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 3.9e-13 77.8 72 62.5
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 3.9e-13 77.8 70 67.1
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 5.1e-13 77.4 71 60.6
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 6.7e-13 77.0 70 60.0
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.5e-12 75.9 71 67.6
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 1.5e-12 75.9 71 60.6
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 1.9e-12 75.5 70 65.7
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 1.9e-12 75.5 69 60.9
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 3.3e-12 74.7 69 56.5
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 3.3e-12 74.7 69 59.4
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 4.3e-12 74.3 70 60.0
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 4.3e-12 74.3 70 60.0
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 4.3e-12 74.3 70 60.0
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 4.3e-12 74.3 69 59.4
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 4.3e-12 74.3 69 59.4
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 5.6e-12 73.9 70 61.4
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 5.6e-12 73.9 74 59.5
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 7.4e-12 73.6 69 55.1
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 1.3e-11 72.8 69 55.1
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 1.6e-11 72.4 70 57.1
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 2.8e-11 71.6 69 55.1
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 3.7e-11 71.2 71 57.7
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 3.7e-11 71.2 71 57.7
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 4.8e-11 70.9 71 57.7
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 4.8e-11 70.9 69 59.4
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 4.8e-11 70.9 71 53.5
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 8.1e-11 70.1 70 58.6
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 8.1e-11 70.1 71 62.0
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 1.1e-10 69.7 69 53.6
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.4e-10 69.3 70 55.7
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 1.4e-10 69.3 70 57.1
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.4e-10 69.3 70 57.1
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 1.8e-10 68.9 69 58.0
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 3.1e-10 68.2 69 53.6
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.1e-10 68.2 69 62.3
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 4.0e-10 67.8 69 58.0
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 4.0e-10 67.8 69 53.6
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 5.3e-10 67.4 70 55.7
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 9.0e-10 66.6 74 50.0
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 1.2e-09 66.2 69 53.6
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 2.6e-09 65.1 70 58.6
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.6e-09 65.1 69 60.9
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 2.6e-09 65.1 69 60.9
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 7.6e-09 63.5 77 51.9
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 1.0e-08 63.2 69 55.1
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 1.0e-08 63.2 70 52.9
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 1.3e-08 62.8 69 49.3
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 2.9e-08 61.6 38 73.7
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 3.8e-08 61.2 69 56.5
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 4.9e-08 60.8 73 53.4
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 4.9e-08 60.8 37 73.0
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 8.4e-08 60.1 74 45.9
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 1.1e-07 59.7 49 65.3
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.1e-07 59.7 74 50.0
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 4.2e-07 57.8 55 58.2
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 2.1e-06 55.5 69 47.8


User provided reference genes

Program Settings