Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 4.1e-59 231.1 109 100.0
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 1.0e-30 136.7 70 91.4
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.8e-30 136.0 70 94.3
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 3.0e-30 135.2 70 91.4
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 4.0e-30 134.8 70 94.3
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 5.2e-30 134.4 70 90.0
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 8.8e-30 133.7 70 91.4
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 1.2e-29 133.3 70 90.0
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 3.4e-29 131.7 70 90.0
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 3.4e-29 131.7 70 90.0
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 4.4e-29 131.3 70 85.7
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 5.7e-29 131.0 70 85.7
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 7.5e-29 130.6 70 90.0
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 9.8e-29 130.2 68 91.2
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 9.8e-29 130.2 70 88.6
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 9.8e-29 130.2 70 88.6
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 1.3e-28 129.8 70 88.6
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 1.3e-28 129.8 70 88.6
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 1.3e-28 129.8 70 87.1
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 1.7e-28 129.4 70 84.3
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 1.7e-28 129.4 70 87.1
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 1.7e-28 129.4 70 88.6
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 1.7e-28 129.4 70 90.0
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 2.2e-28 129.0 70 87.1
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.2e-28 129.0 70 85.7
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 2.2e-28 129.0 70 88.6
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 2.2e-28 129.0 70 87.1
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 2.2e-28 129.0 70 87.1
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 2.8e-28 128.6 70 84.3
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 2.8e-28 128.6 70 85.7
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.8e-28 128.6 70 85.7
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.8e-28 128.6 70 85.7
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 2.8e-28 128.6 70 85.7
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.7e-28 128.3 70 84.3
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 3.7e-28 128.3 70 88.6
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 6.3e-28 127.5 70 84.3
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 8.3e-28 127.1 70 84.3
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 8.3e-28 127.1 70 84.3
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 8.3e-28 127.1 70 82.9
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 8.3e-28 127.1 70 84.3
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 8.3e-28 127.1 70 84.3
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 8.3e-28 127.1 71 87.3
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 1.1e-27 126.7 70 84.3
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 1.1e-27 126.7 84 76.2
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.4e-27 126.3 70 84.3
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 2.4e-27 125.6 70 84.3
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 2.4e-27 125.6 70 84.3
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 2.4e-27 125.6 70 84.3
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 3.1e-27 125.2 70 85.7
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.1e-27 125.2 72 86.1
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 3.1e-27 125.2 70 84.3
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 3.1e-27 125.2 71 85.9
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 5.4e-27 124.4 70 82.9
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 7.0e-27 124.0 72 84.7
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 7.0e-27 124.0 70 84.3
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 7.0e-27 124.0 70 82.9
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 7.0e-27 124.0 71 85.9
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 1.2e-26 123.2 70 84.3
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 1.2e-26 123.2 70 78.6
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 1.6e-26 122.9 70 81.4
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 1.6e-26 122.9 70 84.3
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 2.0e-26 122.5 70 82.9
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.0e-26 122.5 70 84.3
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 2.7e-26 122.1 70 81.4
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 2.7e-26 122.1 70 84.3
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 2.7e-26 122.1 70 80.0
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 3.5e-26 121.7 70 77.1
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 3.5e-26 121.7 70 80.0
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 4.5e-26 121.3 70 80.0
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 4.5e-26 121.3 71 83.1
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 4.5e-26 121.3 70 82.9
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 4.5e-26 121.3 70 82.9
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 5.9e-26 120.9 70 81.4
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 7.7e-26 120.6 70 77.1
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 7.7e-26 120.6 70 82.9
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 7.7e-26 120.6 71 78.9
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 7.7e-26 120.6 70 78.6
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.0e-25 120.2 70 82.9
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 1.0e-25 120.2 72 80.6
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.0e-25 120.2 70 81.4
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 1.3e-25 119.8 71 81.7
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.3e-25 119.8 70 81.4
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 1.7e-25 119.4 70 78.6
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 1.7e-25 119.4 70 78.6
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 2.3e-25 119.0 70 80.0
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 2.9e-25 118.6 70 78.6
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 2.9e-25 118.6 70 80.0
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 3.8e-25 118.2 71 78.9
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 3.8e-25 118.2 70 77.1
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 3.8e-25 118.2 70 81.4
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 5.0e-25 117.9 70 80.0
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 5.0e-25 117.9 72 79.2
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 5.0e-25 117.9 70 78.6
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 6.5e-25 117.5 70 78.6
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 8.6e-25 117.1 71 77.5
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 1.1e-24 116.7 71 77.5
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.5e-24 116.3 71 77.5
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 1.5e-24 116.3 69 76.8
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 2.5e-24 115.5 71 77.5
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 3.3e-24 115.2 70 75.7
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 9.5e-24 113.6 70 77.1
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 9.5e-24 113.6 69 75.4
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 1.6e-23 112.8 71 76.1
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 2.8e-23 112.1 69 73.9
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 3.6e-23 111.7 72 75.0
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 3.6e-23 111.7 70 74.3
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 1.0e-22 110.2 70 74.3
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 1.0e-22 110.2 70 74.3
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 1.0e-22 110.2 70 74.3
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 1.0e-22 110.2 70 74.3
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 1.0e-22 110.2 70 74.3
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 1.0e-22 110.2 70 74.3
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 1.0e-22 110.2 70 74.3
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 1.0e-22 110.2 70 74.3
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 1.0e-22 110.2 70 74.3
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.0e-22 110.2 76 71.1
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.8e-22 109.4 89 65.2
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 2.3e-22 109.0 70 72.9
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 3.0e-22 108.6 62 82.3
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 4.0e-22 108.2 70 72.9
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 5.2e-22 107.8 126 49.2
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 2.0e-21 105.9 70 68.6
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 9.8e-21 103.6 72 69.4
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 1.3e-20 103.2 140 45.0
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 3.7e-20 101.7 69 62.3
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 3.1e-19 98.6 61 75.4
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 3.1e-19 98.6 69 68.1
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.3e-17 93.2 69 58.0
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 6.6e-17 90.9 70 62.9
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 2.5e-16 89.0 64 65.6
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 4.3e-16 88.2 76 61.8
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 7.3e-16 87.4 59 74.6
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 2.7e-10 68.9 37 89.2
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 1.5e-08 63.2 42 81.0


User provided reference genes

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