Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 2.2e-217 758.8 436 100.0
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 6.4e-172 607.8 385 81.3
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 6.6e-169 597.8 395 80.8
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 1.9e-160 569.7 411 74.7
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 7.6e-157 557.8 375 76.0
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 2.9e-156 555.8 381 76.4
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 2.9e-156 555.8 391 73.1
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 4.9e-156 555.1 380 75.0
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 6.4e-156 554.7 382 75.4
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 6.4e-156 554.7 382 75.1
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 6.4e-156 554.7 394 73.4
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 1.4e-155 553.5 377 77.5
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 3.2e-155 552.4 375 77.1
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 1.6e-154 550.1 376 76.1
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 2.1e-154 549.7 399 73.4
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 3.5e-154 548.9 347 80.4
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.7e-153 546.6 376 75.8
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 2.3e-153 546.2 391 73.1
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 3.0e-153 545.8 353 79.3
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 5.1e-153 545.0 377 75.9
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 5.1e-153 545.0 365 77.5
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 5.1e-153 545.0 383 73.4
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 6.6e-153 544.7 371 76.3
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 6.6e-153 544.7 366 76.8
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 8.7e-153 544.3 385 74.0
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 1.5e-152 543.5 360 78.9
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.5e-152 543.5 364 77.7
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 3.3e-152 542.3 355 78.6
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 5.6e-152 541.6 384 72.9
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 7.3e-152 541.2 358 78.2
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 9.6e-152 540.8 373 76.4
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 2.1e-151 539.7 347 79.0
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 3.6e-151 538.9 345 78.8
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 8.1e-151 537.7 372 75.3
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.8e-150 536.6 390 73.3
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 2.4e-150 536.2 377 75.1
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 4.0e-150 535.4 363 75.8
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 9.0e-150 534.3 374 74.9
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 9.0e-150 534.3 376 73.4
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.0e-149 533.1 390 72.3
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 3.4e-149 532.3 362 73.2
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 3.4e-149 532.3 376 73.4
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 4.5e-149 531.9 399 70.7
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 3.8e-148 528.9 361 76.2
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 6.4e-148 528.1 366 76.0
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 8.4e-148 527.7 360 75.0
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 8.4e-148 527.7 393 72.3
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 2.4e-147 526.2 374 74.1
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 3.2e-147 525.8 385 70.4
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 7.1e-147 524.6 385 73.2
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 9.3e-147 524.2 390 69.7
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 1.2e-146 523.9 362 74.0
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 1.2e-146 523.9 374 71.4
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 1.6e-146 523.5 367 74.9
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 1.6e-146 523.5 376 71.5
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.7e-146 522.7 368 71.5
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 2.7e-146 522.7 365 74.0
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 3.5e-146 522.3 420 66.7
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.8e-145 520.0 357 73.7
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 6.7e-145 518.1 362 74.3
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 8.7e-145 517.7 371 72.0
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 1.1e-144 517.3 371 71.7
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 1.5e-144 516.9 363 72.2
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 5.6e-144 515.0 378 70.1
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 7.4e-144 514.6 382 68.6
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 1.1e-142 510.8 366 72.7
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 3.1e-142 509.2 360 72.2
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 3.1e-142 509.2 357 72.5
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 9.0e-142 507.7 401 66.8
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 3.4e-141 505.8 373 70.8
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 7.6e-141 504.6 386 69.7
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 1.3e-140 503.8 359 71.3
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 1.4e-139 500.4 438 61.4
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 4.6e-138 495.4 358 69.6
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 7.9e-138 494.6 364 68.7
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 3.9e-137 492.3 361 70.9
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 5.1e-137 491.9 357 69.2
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 5.1e-137 491.9 369 69.4
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 8.7e-137 491.1 368 68.8
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 1.5e-136 490.3 335 75.5
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 1.9e-136 490.0 357 68.1
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 2.5e-136 489.6 355 71.5
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 3.3e-136 489.2 398 64.8
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 4.3e-136 488.8 359 69.1
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 4.3e-136 488.8 358 69.0
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 8.2e-135 484.6 358 68.7
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 1.4e-134 483.8 354 68.4
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 5.3e-134 481.9 355 69.0
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 1.2e-133 480.7 359 67.4
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 1.2e-133 480.7 359 67.4
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 5.8e-133 478.4 359 67.1
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 5.1e-129 465.3 380 65.0
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 5.1e-129 465.3 380 65.0
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 8.7e-129 464.5 357 67.8
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 1.5e-128 463.8 361 66.5
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 9.0e-126 454.5 356 66.9
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 2.2e-124 449.9 354 65.8
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 7.2e-123 444.9 333 67.6
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 6.1e-122 441.8 330 67.6
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 1.1e-120 437.6 352 64.5
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 4.3e-120 435.6 390 61.3
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 3.7e-119 432.6 347 66.6
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 3.4e-117 426.0 306 73.9
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 1.3e-116 424.1 331 66.2
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 3.1e-110 402.9 254 81.5
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 1.5e-109 400.6 243 82.3
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 4.5e-109 399.1 272 70.6
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 1.5e-104 384.0 366 55.7
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 1.7e-103 380.6 238 77.7
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 3.5e-101 372.9 346 55.8
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 2.3e-97 360.1 350 55.7
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.8e-95 353.2 242 74.0
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 9.1e-94 348.2 236 76.3
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 1.4e-89 334.3 243 69.5
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 5.7e-88 328.9 302 58.9
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 7.5e-88 328.6 295 55.9
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 5.0e-84 315.8 201 80.1
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 5.0e-84 315.8 261 60.9
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 3.1e-73 280.0 294 50.0
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 1.1e-70 271.6 304 54.6
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 1.6e-66 257.7 283 48.8
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 3.6e-66 256.5 347 43.2
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 1.8e-65 254.2 284 49.6
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 2.6e-64 250.4 284 50.0
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 3.4e-64 250.0 181 69.1
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 3.2e-62 243.4 190 66.8
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 1.4e-54 218.0 239 53.1
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 2.4e-49 200.7 199 57.3
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 8.7e-44 182.2 137 75.2
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 3.2e-38 163.7 327 36.1
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 4.0e-33 146.7 83 84.3
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 2.9e-31 140.6 121 63.6
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 2.1e-29 134.4 76 81.6
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 6.0e-29 132.9 84 79.8
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 7.6e-24 115.9 72 81.9
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 3.2e-22 110.5 72 79.2
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 3.5e-21 107.1 82 65.9
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 1.2e-13 82.0 99 47.5
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 2.3e-12 77.8 57 66.7
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 3.0e-12 77.4 85 56.5


User provided reference genes

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