Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p024505 Quercus lobata HOM05D004559 ORTHO05D005283 8.2e-55 216.9 112 100.0
QL05p058743 Quercus lobata HOM05D004559 ORTHO05D005283 1.9e-40 169.1 108 82.4
Cfa000955 Carpinus fangiana HOM05D004559 ORTHO05D005283 1.3e-31 139.8 108 65.7
Haze_05570 Corylus avellana HOM05D004559 ORTHO05D005283 2.2e-31 139.0 108 66.7
CiPaw.09G125100 Carya illinoinensis HOM05D004559 ORTHO05D005283 3.7e-31 138.3 108 68.5
QL05p063602 Quercus lobata HOM05D004559 ORTHO05D005283 5.3e-30 134.4 101 77.2
Manes.01G172800 Manihot esculenta HOM05D004559 ORTHO05D005283 1.2e-29 133.3 108 61.1
ClCG01G024550 Citrullus lanatus HOM05D004559 ORTHO05D005283 1.5e-29 132.9 108 64.8
TAR626G0687 Trochodendron aralioides HOM05D004559 ORTHO05D005283 1.5e-29 132.9 108 62.0
Aa31LG10G6900 Aethionema arabicum HOM05D004559 ORTHO05D005283 2.6e-29 132.1 101 66.3
Nn3g20736 Nelumbo nucifera HOM05D004559 ORTHO05D005283 2.6e-29 132.1 108 63.9
MELO3C007140.2 Cucumis melo HOM05D004559 ORTHO05D005283 1.0e-28 130.2 108 63.0
Manes.02G132100 Manihot esculenta HOM05D004559 ORTHO05D005283 1.0e-28 130.2 101 63.4
CsaV3_6G051670 Cucumis sativus L. HOM05D004559 ORTHO05D005283 1.3e-28 129.8 108 63.0
Eucgr.D00302 Eucalyptus grandis HOM05D004559 ORTHO05D005283 1.7e-28 129.4 108 62.0
Lalb_Chr18g0055551 Lupinus albus HOM05D004559 ORTHO05D005283 1.7e-28 129.4 108 62.0
Ah.14g086460 Amaranthus hybridus HOM05D001706 ORTHO05D005283 2.9e-28 128.6 108 63.9
Rhsim13G0194400 Rhododendron simsii HOM05D004559 ORTHO05D005283 2.9e-28 128.6 108 62.0
HanXRQChr04g0118611 Helianthus annuus HOM05D004559 ORTHO05D005283 6.5e-28 127.5 108 59.3
HanXRQChr15g0480071 Helianthus annuus HOM05D004559 ORTHO05D005283 6.5e-28 127.5 106 60.4
FvH4_3g05750 Fragaria vesca HOM05D004559 ORTHO05D005283 8.5e-28 127.1 108 63.0
Gorai.009G155800 Gossypium raimondii HOM05D004559 ORTHO05D005283 8.5e-28 127.1 108 63.0
Medtr2g019640 Medicago truncatula HOM05D004559 ORTHO05D005283 8.5e-28 127.1 108 62.0
Aqoxy1G04198 Aquilegia oxysepala HOM05D004559 ORTHO05D005283 1.1e-27 126.7 106 60.4
FAN11G0428 Fragaria x ananassa HOM05D004559 ORTHO05D005283 1.1e-27 126.7 108 62.0
Prupe.4G079400 Prunus persica HOM05D004559 ORTHO05D005283 1.1e-27 126.7 108 63.0
PGR083G1233 Punica granatum HOM05D004559 ORTHO05D005283 1.1e-27 126.7 108 63.0
RcHm_v2.0_Chr5g0013841 Rosa chinensis HOM05D004559 ORTHO05D005283 1.1e-27 126.7 108 63.0
Sc17g0004960 Simmondsia chinensis HOM05D004559 ORTHO05D005283 1.1e-27 126.7 108 61.1
Thecc.06G152000 Theobroma cacao HOM05D004559 ORTHO05D005283 1.1e-27 126.7 108 63.0
Gohir.A05G149200 Gossypium hirsutum HOM05D004559 ORTHO05D005283 1.4e-27 126.3 108 62.0
THA.LOC104814293 Tarenaya hassleriana HOM05D004559 ORTHO05D005283 1.4e-27 126.3 108 61.1
TPR.G35511 Trifolium pratense HOM05D004559 ORTHO05D005283 1.4e-27 126.3 108 61.1
Atru.chr10.1255 Acer truncatum HOM05D004559 ORTHO05D005283 1.9e-27 125.9 108 62.0
Ah.09g232660 Amaranthus hybridus HOM05D004559 ORTHO05D005283 1.9e-27 125.9 94 69.1
Gohir.A05G149100 Gossypium hirsutum HOM05D004559 ORTHO05D005283 2.5e-27 125.6 108 62.0
EL10Ac8g19728 Beta vulgaris HOM05D004559 ORTHO05D005283 5.5e-27 124.4 111 62.2
Gohir.D05G151600 Gossypium hirsutum HOM05D004559 ORTHO05D005283 5.5e-27 124.4 106 61.3
CARHR128590 Cardamine hirsuta HOM05D004559 ORTHO05D005283 7.2e-27 124.0 89 70.8
COL.COLO4_31091 Corchorus olitorius HOM05D004559 ORTHO05D005283 7.2e-27 124.0 96 65.6
ECA236G2101 Erigeron canadensis HOM05D004559 ORTHO05D005283 7.2e-27 124.0 108 57.4
Gohir.D05G151700 Gossypium hirsutum HOM05D004559 ORTHO05D005283 7.2e-27 124.0 108 62.0
Potri.004G131700 Populus trichocarpa HOM05D004559 ORTHO05D005283 7.2e-27 124.0 108 60.2
AUR62018731 Chenopodium quinoa HOM05D004559 ORTHO05D005283 9.4e-27 123.6 108 61.1
Gohir.D06G142200 Gossypium hirsutum HOM05D004559 ORTHO05D005283 9.4e-27 123.6 108 62.0
Lsat_1_v5_gn_7_30060 Lactuca sativa HOM05D004559 ORTHO05D005283 9.4e-27 123.6 108 56.5
FAN16G3572 Fragaria x ananassa HOM05D004559 ORTHO05D005283 1.2e-26 123.2 108 62.0
Psat1g190840 Pisum sativum HOM05D004559 ORTHO05D005283 1.2e-26 123.2 108 60.2
AL4G30470 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 1.6e-26 122.9 92 67.4
arahy.Tifrunner.gnm1.ann1.5ZLV04 Arachis hypogaea HOM05D004559 ORTHO05D005283 1.6e-26 122.9 108 57.4
arahy.Tifrunner.gnm1.ann1.64U7NV Arachis hypogaea HOM05D004559 ORTHO05D005283 1.6e-26 122.9 108 57.4
FAN21G2502 Fragaria x ananassa HOM05D004559 ORTHO05D005283 1.6e-26 122.9 108 61.1
Ciclev10014973m.g Citrus clementina HOM05D004559 ORTHO05D005283 2.1e-26 122.5 108 60.2
Duzib192G1007 Durio zibethinus HOM05D004559 ORTHO05D005283 2.1e-26 122.5 98 63.3
Ca_00552_v3 Cicer arietinum L. HOM05D004559 ORTHO05D005283 2.7e-26 122.1 108 59.3
FAN25G1224 Fragaria x ananassa HOM05D004559 ORTHO05D005283 3.6e-26 121.7 108 60.2
MBI10_g02219_MAGBIO Magnolia biondii HOM05D004559 ORTHO05D005283 3.6e-26 121.7 108 57.4
Phvul.006G163800 Phaseolus vulgaris HOM05D004559 ORTHO05D005283 3.6e-26 121.7 108 59.3
Aqoxy4G00090 Aquilegia oxysepala HOM05D004559 ORTHO05D005283 4.7e-26 121.3 99 59.6
CARHR128580 Cardamine hirsuta HOM05D004559 ORTHO05D005283 4.7e-26 121.3 99 62.6
Carub.0004s1617 Capsella rubella HOM05D004559 ORTHO05D005283 6.1e-26 120.9 90 66.7
Gorai.010G166000 Gossypium raimondii HOM05D004559 ORTHO05D005283 6.1e-26 120.9 108 59.3
PSO407G0284 Papaver somniferum HOM05D004559 ORTHO05D005283 6.1e-26 120.9 108 55.6
AT2G34500 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 8.0e-26 120.6 89 68.5
AUR62007268 Chenopodium quinoa HOM05D004559 ORTHO05D005283 8.0e-26 120.6 96 65.6
CSS0018950 Camellia sinensis var. sinensis HOM05D004559 ORTHO05D005283 1.0e-25 120.2 108 57.4
Gorai.010G166100 Gossypium raimondii HOM05D004559 ORTHO05D005283 1.0e-25 120.2 95 63.2
VMungo0540G1851 Vigna mungo HOM05D004559 ORTHO05D005283 1.0e-25 120.2 108 57.4
PSO170G5325 Papaver somniferum HOM05D004559 ORTHO05D005283 1.4e-25 119.8 108 54.6
Gorai.009G155600 Gossypium raimondii HOM05D004559 ORTHO05D005283 1.8e-25 119.4 106 59.4
Lj6g0026599 Lotus japonicus HOM05D004559 ORTHO05D005283 1.8e-25 119.4 108 57.4
TWI73G0246 Tripterygium wilfordii HOM05D004559 ORTHO05D005283 1.8e-25 119.4 108 60.2
DCAR_027922 Daucus carota HOM05D004559 ORTHO05D005283 2.3e-25 119.0 108 58.3
Glyma.13G217400 Glycine max HOM05D004559 ORTHO05D005283 2.3e-25 119.0 101 62.4
PSO675G8299 Papaver somniferum HOM05D004559 ORTHO05D005283 2.3e-25 119.0 108 53.7
Duzib235G0428 Durio zibethinus HOM05D004559 ORTHO05D005283 3.0e-25 118.6 108 59.3
Sed0018301 Sechium edule HOM05D004559 ORTHO05D005283 3.0e-25 118.6 108 57.4
Glyma.15G095000 Glycine max HOM05D004559 ORTHO05D005283 3.9e-25 118.2 108 57.4
A04p26420 Brassica napus HOM05D004559 ORTHO05D005283 5.2e-25 117.9 89 66.3
C04p63830 Brassica napus HOM05D004559 ORTHO05D005283 5.2e-25 117.9 89 66.3
BraA04t18146Z Brassica rapa HOM05D004559 ORTHO05D005283 5.2e-25 117.9 89 66.3
Sp4g16760 Schrenkiella parvula HOM05D004559 ORTHO05D005283 8.8e-25 117.1 108 58.3
AT2G34490 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 1.1e-24 116.7 93 63.4
BolC4t27851H Brassica oleracea HOM05D004559 ORTHO05D005283 1.1e-24 116.7 89 66.3
BcaC02g11512 Brassica carinata HOM05D004559 ORTHO05D005283 2.6e-24 115.5 108 57.4
C04p14530 Brassica napus HOM05D004559 ORTHO05D005283 2.6e-24 115.5 108 57.4
BcaB02g09537 Brassica carinata HOM05D004559 ORTHO05D005283 3.3e-24 115.2 89 64.0
CDE02G1201 Ceratophyllum demersum HOM05D004559 ORTHO05D005283 3.3e-24 115.2 108 58.3
Thhalv10016547m.g Eutrema salsugineum HOM05D004559 ORTHO05D005283 5.7e-24 114.4 101 57.4
Thhalv10016552m.g Eutrema salsugineum HOM05D004559 ORTHO05D005283 5.7e-24 114.4 108 56.5
A05p11180 Brassica napus HOM05D004559 ORTHO05D005283 7.4e-24 114.0 89 64.0
BolC4t23036H Brassica oleracea HOM05D004559 ORTHO05D005283 7.4e-24 114.0 101 57.4
BraA05t20064Z Brassica rapa HOM05D004559 ORTHO05D005283 7.4e-24 114.0 89 64.0
Carub.0004s1616 Capsella rubella HOM05D004559 ORTHO05D005283 7.4e-24 114.0 99 59.6
AL4G23390 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 9.7e-24 113.6 87 64.4
Carub.0004s0985 Capsella rubella HOM05D004559 ORTHO05D005283 9.7e-24 113.6 88 64.8
AL4G30460 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 2.8e-23 112.1 99 58.6
Cpa.g.sc166.19 Carica papaya HOM05D004559 ORTHO05D005283 2.8e-23 112.1 108 54.6
Lj6g0003176 Lotus japonicus HOM05D004559 ORTHO05D005283 2.8e-23 112.1 99 57.6
MD05G1285000 Malus domestica HOM05D004559 ORTHO05D005283 2.8e-23 112.1 94 61.7
Os01g0210900 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 2.8e-23 112.1 108 53.7
Gohir.A06G137102 Gossypium hirsutum HOM05D004559 ORTHO05D005283 6.3e-23 110.9 100 60.0
Os01g0211000 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 6.3e-23 110.9 106 53.8
Os01g0211600 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 6.3e-23 110.9 108 53.7
BcaB06g28777 Brassica carinata HOM05D004559 ORTHO05D005283 8.2e-23 110.5 89 62.9
Lalb_Chr18g0055541 Lupinus albus HOM05D004559 ORTHO05D005283 8.2e-23 110.5 100 56.0
CARHR122010 Cardamine hirsuta HOM05D004559 ORTHO05D005283 1.1e-22 110.2 88 62.5
PSO732G0295 Papaver somniferum HOM05D004559 ORTHO05D005283 1.1e-22 110.2 106 50.9
BcaB06g28776 Brassica carinata HOM05D004559 ORTHO05D005283 1.8e-22 109.4 81 67.9
Os01g0211200 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 3.1e-22 108.6 108 53.7
SalBow7G0183 Salvia bowleyana HOM05D004559 ORTHO05D005283 3.1e-22 108.6 83 65.1
Oeu034159.1 Olea europaea HOM05D004559 ORTHO05D005283 4.1e-22 108.2 98 58.2
unitig_0.g931 Utricularia gibba HOM05D004559 ORTHO05D005283 9.1e-22 107.1 80 65.0
AT2G28860 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 1.6e-21 106.3 87 59.8
CAN.G650.2 Capsicum annuum HOM05D004559 ORTHO05D005283 1.6e-21 106.3 108 53.7
HPP92_004048 Vanilla planifolia HOM05D004559 ORTHO05D005283 1.6e-21 106.3 86 59.3
Peaxi162Scf01205g00119 Petunia axillaris HOM05D004559 ORTHO05D005283 3.5e-21 105.1 108 52.8
AT2G28850 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 5.9e-21 104.4 88 59.1
MSTRG.14771 Avicennia marina HOM05D004559 ORTHO05D005283 7.7e-21 104.0 80 62.5
HPP92_004055 Vanilla planifolia HOM05D004559 ORTHO05D005283 7.7e-21 104.0 86 58.1
AagrBONN_evm.TU.Sc2ySwM_344.1308 Anthoceros agrestis HOM05D004559 ORTHO05D005283 1.0e-20 103.6 105 50.5
Cc09_g09430 Coffea canephora HOM05D004559 ORTHO05D005283 1.0e-20 103.6 108 48.1
HPP92_024037 Vanilla planifolia HOM05D004559 ORTHO05D005283 1.0e-20 103.6 84 59.5
Solyc02g070580.1 Solanum lycopersicum HOM05D004559 ORTHO05D005283 1.3e-20 103.2 83 60.2
Migut.H01366 Erythranthe guttata HOM05D004559 ORTHO05D005283 2.2e-20 102.4 80 58.8
PGSC0003DMG400021157 Solanum tuberosum HOM05D004559 ORTHO05D005283 2.9e-20 102.1 83 60.2
Sopen02g019670 Solanum pennellii HOM05D004559 ORTHO05D005283 3.8e-20 101.7 83 59.0
AagrBONN_evm.TU.Sc2ySwM_344.5146 Anthoceros agrestis HOM05D004559 ORTHO05D005283 8.5e-20 100.5 105 50.5
CDE09G0977 Ceratophyllum demersum HOM05D004559 ORTHO05D005283 8.5e-20 100.5 108 52.8
Nitab4.5_0004023g0020 Nicotiana tabacum HOM05D004559 ORTHO05D005283 8.5e-20 100.5 80 61.2
Pp3c2_27810 Physcomitrium patens HOM05D004559 ORTHO05D005283 4.2e-19 98.2 105 48.6
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 4.2e-19 98.2 89 58.4
ATR0044G015 Amborella trichopoda HOM05D004559 ORTHO05D005283 7.2e-19 97.4 108 50.9
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 1.6e-18 96.3 75 64.0
SEGI_11062 Sequoiadendron giganteum HOM05D004559 ORTHO05D005283 4.7e-18 94.7 105 45.7
Nitab4.5_0001755g0010 Nicotiana tabacum HOM05D004559 ORTHO05D005283 8.0e-18 94.0 88 53.4
SGA_v2.0_scaffold106G30645 Striga asiatica HOM05D004559 ORTHO05D005283 1.0e-17 93.6 82 56.1
Pp3c1_11690 Physcomitrium patens HOM05D004559 ORTHO05D005283 1.8e-17 92.8 105 46.7
CAN.G170.28 Capsicum annuum HOM05D004559 ORTHO05D005283 3.0e-17 92.0 82 56.1
Mapoly0045s0151 Marchantia polymorpha HOM05D004559 ORTHO05D005283 1.3e-15 86.7 105 44.8
Mapoly0103s0038 Marchantia polymorpha HOM05D004559 ORTHO05D005283 1.2e-13 80.1 103 40.8
SMO367G0132 Selaginella moellendorffii HOM05D004559 ORTHO05D005283 4.5e-13 78.2 114 36.0
Cre11.g467527 Chlamydomonas reinhardtii HOM05D004559 ORTHO05D005283 5.5e-11 71.2 76 47.4
Nn8g41110 Nelumbo nucifera HOM05D004559 ORTHO05D005283 1.8e-09 66.2 69 52.2
PSO210G3360 Papaver somniferum HOM05D004559 ORTHO05D005283 9.8e-08 60.5 57 56.1
Nn2g14469 Nelumbo nucifera HOM05D004559 ORTHO05D005283 3.1e-06 55.5 39 66.7


User provided reference genes

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