Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p024090 Quercus lobata HOM05D001217 ORTHO05D001097 1.7e-94 349.4 183 100.0
QL05p044520 Quercus lobata HOM05D001217 ORTHO05D337101 3.5e-79 298.5 180 89.4
QL01p014877 Quercus lobata HOM05D001217 ORTHO05D001097 2.9e-78 295.4 184 89.1
CiPaw.13G144700 Carya illinoinensis HOM05D001217 ORTHO05D001097 1.5e-45 186.8 190 60.5
Cfa010138 Carpinus fangiana HOM05D001217 ORTHO05D001097 1.1e-35 154.1 191 52.4
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 5.8e-34 148.3 191 51.3
MD11G1149500 Malus domestica HOM05D001217 ORTHO05D001097 2.3e-22 109.8 191 43.5
Ca_01702_v3 Cicer arietinum L. HOM05D001217 ORTHO05D001097 2.8e-20 102.8 177 44.6
Glyma.12G179200 Glycine max HOM05D001217 ORTHO05D001097 2.8e-20 102.8 181 46.4
VMungo1080G0631 Vigna mungo HOM05D001217 ORTHO05D001097 4.8e-20 102.1 151 52.3
Lalb_Chr24g0394991 Lupinus albus HOM05D001217 ORTHO05D001097 6.2e-20 101.7 161 48.4
Phvul.005G129800 Phaseolus vulgaris HOM05D001217 ORTHO05D001097 1.1e-19 100.9 149 52.3
Lj3g0016704 Lotus japonicus HOM05D001217 ORTHO05D001097 5.3e-19 98.6 116 59.5
Thecc.09G296900 Theobroma cacao HOM05D001217 ORTHO05D001097 9.0e-19 97.8 168 44.6
RcHm_v2.0_Chr5g0056471 Rosa chinensis HOM05D001217 ORTHO05D001097 1.0e-17 94.4 169 43.2
Glyma.13G321400 Glycine max HOM05D001217 ORTHO05D001097 1.3e-17 94.0 147 49.7
MD03G1127900 Malus domestica HOM05D001217 ORTHO05D001097 1.3e-17 94.0 214 39.3
Psat0s935g0080 Pisum sativum HOM05D001217 ORTHO05D001097 2.9e-17 92.8 179 48.0
Prupe.6G113900 Prunus persica HOM05D001217 ORTHO05D001097 3.8e-17 92.4 202 40.6
Lalb_Chr22g0350451 Lupinus albus HOM05D001217 ORTHO05D001097 1.1e-16 90.9 116 52.6
Duzib168G0315 Durio zibethinus HOM05D001217 ORTHO05D001097 2.5e-16 89.7 103 56.3
Cpa.g.sc47.10 Carica papaya HOM05D001217 ORTHO05D002176 4.2e-16 89.0 167 45.5
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 9.3e-16 87.8 144 43.8
Actinidia24154 Actinidia chinensis HOM05D001217 ORTHO05D001097 2.1e-15 86.7 147 43.5
TPR.G21033 Trifolium pratense HOM05D001217 ORTHO05D001097 3.5e-15 85.9 163 46.6
ClCG02G021700 Citrullus lanatus HOM05D001217 ORTHO05D001097 4.6e-15 85.5 111 50.5
Duzib150G0216 Durio zibethinus HOM05D001217 ORTHO05D001097 4.6e-15 85.5 100 55.0
FAN16G1671 Fragaria x ananassa HOM05D001217 ORTHO05D001097 4.6e-15 85.5 182 42.3
Gohir.A07G105400 Gossypium hirsutum HOM05D001217 ORTHO05D001097 4.6e-15 85.5 185 40.5
Gohir.D07G109400 Gossypium hirsutum HOM05D001217 ORTHO05D001097 4.6e-15 85.5 185 41.6
Gorai.001G117500 Gossypium raimondii HOM05D001217 ORTHO05D001097 4.6e-15 85.5 185 41.6
Medtr2g084425 Medicago truncatula HOM05D001217 ORTHO05D001097 4.6e-15 85.5 166 45.8
arahy.Tifrunner.gnm1.ann1.EFWL5I Arachis hypogaea HOM05D001217 ORTHO05D001097 7.9e-15 84.7 126 50.0
FvH4_3g30510 Fragaria vesca HOM05D001217 ORTHO05D001097 7.9e-15 84.7 182 42.9
arahy.Tifrunner.gnm1.ann1.T35FHV Arachis hypogaea HOM05D001217 ORTHO05D001097 1.3e-14 84.0 128 47.7
COL.COLO4_19216 Corchorus olitorius HOM05D001217 ORTHO05D001097 3.0e-14 82.8 139 44.6
FAN11G3341 Fragaria x ananassa HOM05D001217 ORTHO05D001097 3.0e-14 82.8 182 42.3
FAN25G1237 Fragaria x ananassa HOM05D001217 ORTHO05D001097 3.9e-14 82.4 182 42.3
arahy.Tifrunner.gnm1.ann1.JI2FJ7 Arachis hypogaea HOM05D001217 ORTHO05D001097 6.7e-14 81.6 138 46.4
arahy.Tifrunner.gnm1.ann1.PW9PR6 Arachis hypogaea HOM05D001217 ORTHO05D001097 6.7e-14 81.6 138 46.4
FAN21G1478 Fragaria x ananassa HOM05D001217 ORTHO05D001097 8.7e-14 81.3 182 42.3
Rhsim13G0101700 Rhododendron simsii HOM05D001217 ORTHO05D001097 1.9e-13 80.1 167 38.3
MELO3C026959.2 Cucumis melo HOM05D001217 ORTHO05D001097 3.3e-13 79.3 111 50.5
Gohir.A09G087900 Gossypium hirsutum HOM05D001217 ORTHO05D001097 4.3e-13 79.0 153 41.8
Sed0020198 Sechium edule HOM05D001217 ORTHO05D001097 4.3e-13 79.0 202 37.1
TAR633G2401 Trochodendron aralioides HOM05D001217 ORTHO05D001097 4.3e-13 79.0 105 48.6
Gohir.D09G087750 Gossypium hirsutum HOM05D001217 ORTHO05D001097 5.7e-13 78.6 153 41.8
Gorai.006G104200 Gossypium raimondii HOM05D001217 ORTHO05D001097 5.7e-13 78.6 153 41.8
Dinv29386 Davidia involucrata HOM05D001217 ORTHO05D001097 9.7e-13 77.8 146 41.1
vmacro03249 Vaccinium macrocarpon HOM05D001217 ORTHO05D001097 3.7e-12 75.9 175 37.7
CANSAT64G0677 Cannabis sativa HOM05D001217 ORTHO05D001097 1.1e-11 74.3 239 33.9
CSS0029453 Camellia sinensis var. sinensis HOM05D001217 ORTHO05D001097 1.4e-11 73.9 209 36.8
CSS0045104 Camellia sinensis var. sinensis HOM05D001217 ORTHO05D001097 1.4e-11 73.9 209 36.8
Nn2g13878 Nelumbo nucifera HOM05D001217 ORTHO05D001097 2.4e-11 73.2 90 56.7
Ciclev10030297m.g Citrus clementina HOM05D001217 ORTHO05D001097 3.1e-11 72.8 137 42.3
Lalb_Chr03g0027741 Lupinus albus HOM05D001217 ORTHO05D001097 3.1e-11 72.8 176 43.8
TWI31G1304 Tripterygium wilfordii HOM05D001217 ORTHO05D001097 4.1e-11 72.4 143 39.2
TAR636G3187 Trochodendron aralioides HOM05D001217 ORTHO05D001097 6.9e-11 71.6 79 54.4
Nn6g35189 Nelumbo nucifera HOM05D001217 ORTHO05D001097 2.0e-10 70.1 113 45.1
Sed0001390 Sechium edule HOM05D001217 ORTHO05D001097 2.0e-10 70.1 187 36.9
TWI79G1541 Tripterygium wilfordii HOM05D001217 ORTHO05D001097 2.6e-10 69.7 144 41.7
PGR102G0660 Punica granatum HOM05D001217 ORTHO05D001097 7.7e-10 68.2 105 49.5
Hund00832 Selenicereus undatus HOM05D001217 ORTHO05D001097 1.3e-09 67.4 107 46.7
CsaV3_6G014450 Cucumis sativus L. HOM05D001217 ORTHO05D001097 2.9e-09 66.2 226 33.6
Eucgr.B03919 Eucalyptus grandis HOM05D001217 ORTHO05D001097 6.5e-09 65.1 168 37.5
CARHR120690 Cardamine hirsuta HOM05D001217 ORTHO05D001097 8.5e-09 64.7 163 39.9
TAR369G0409 Trochodendron aralioides HOM05D001217 ORTHO05D001097 1.1e-08 64.3 77 49.4
Dinv16241 Davidia involucrata HOM05D001217 ORTHO05D001097 2.5e-08 63.2 148 38.5
Sc21g0004220 Simmondsia chinensis HOM05D001217 ORTHO05D001097 2.5e-08 63.2 186 32.8
THA.LOC104826393 Tarenaya hassleriana HOM05D001217 ORTHO05D001097 2.5e-08 63.2 117 45.3
GSVIVG01031451001 Vitis vinifera HOM05D001217 ORTHO05D001097 2.5e-08 63.2 190 33.7
Sp4g10800 Schrenkiella parvula HOM05D001217 ORTHO05D001097 4.2e-08 62.4 161 36.6
EL10Ac9g21010 Beta vulgaris HOM05D001217 ORTHO05D001097 5.5e-08 62.0 123 42.3
AUR62024017 Chenopodium quinoa HOM05D001217 ORTHO05D001097 5.5e-08 62.0 146 38.4
AT2G27980 Arabidopsis thaliana HOM05D001217 ORTHO05D001097 7.2e-08 61.6 167 38.3
Lsat_1_v5_gn_6_43021 Lactuca sativa HOM05D001217 ORTHO05D001097 7.2e-08 61.6 183 35.5
Ah.01g004820 Amaranthus hybridus HOM05D001217 ORTHO05D001097 9.4e-08 61.2 128 39.8
HanXRQChr02g0055321 Helianthus annuus HOM05D001217 ORTHO05D001097 1.2e-07 60.8 63 55.6
VMungo1127G1020 Vigna mungo HOM05D001217 ORTHO05D001097 1.6e-07 60.5 155 34.8
Ca_10761_v3 Cicer arietinum L. HOM05D001217 ORTHO05D001097 2.1e-07 60.1 97 40.2
Hma1.2p1_0772F.1_g215970 Hydrangea macrophylla HOM05D001217 ORTHO05D001097 2.1e-07 60.1 220 30.0
Lj2A1005G25 Lonicera japonica HOM05D001217 ORTHO05D001097 2.1e-07 60.1 174 36.8
Manes.11G153000 Manihot esculenta HOM05D001217 ORTHO05D001097 3.6e-07 59.3 210 35.7
Phvul.011G087000 Phaseolus vulgaris HOM05D001217 ORTHO05D001097 3.6e-07 59.3 191 33.0
BolC4t27243H Brassica oleracea HOM05D001217 ORTHO05D001097 4.6e-07 58.9 113 44.2
THA.LOC104800570 Tarenaya hassleriana HOM05D001217 ORTHO05D001097 6.1e-07 58.5 186 34.4
Aqoxy1G01057 Aquilegia oxysepala HOM05D001217 ORTHO05D001097 7.9e-07 58.2 99 44.4
BcaC02g08218 Brassica carinata HOM05D001217 ORTHO05D001097 2.3e-06 56.6 156 38.5
A04p21240 Brassica napus HOM05D001217 ORTHO05D001097 3.9e-06 55.8 162 38.9
Carub.0004s0874 Capsella rubella HOM05D001217 ORTHO05D001097 3.9e-06 55.8 122 41.8
PSO801G0174 Papaver somniferum HOM05D001217 ORTHO05D001097 3.9e-06 55.8 107 45.8


User provided reference genes

Program Settings