Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 1.5e-199 699.5 405 100.0
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 8.9e-168 594.0 417 84.9
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 9.8e-159 563.9 406 71.4
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.7e-158 563.1 404 71.5
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 3.2e-157 558.9 404 71.3
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 4.1e-157 558.5 405 71.1
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 1.9e-154 549.7 403 71.7
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 5.6e-154 548.1 403 69.2
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 3.1e-152 542.3 403 71.2
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 5.2e-152 541.6 432 66.9
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 5.2e-152 541.6 403 70.7
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 6.8e-152 541.2 404 70.0
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 3.4e-151 538.9 403 70.7
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 3.4e-151 538.9 407 69.8
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 9.9e-151 537.3 501 60.3
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 1.3e-150 537.0 403 72.5
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 6.4e-150 534.6 403 67.2
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 2.4e-149 532.7 403 69.2
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 2.1e-148 529.6 388 71.1
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 7.8e-148 527.7 400 69.0
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.0e-147 527.3 405 67.7
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.3e-147 526.9 403 68.7
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.7e-147 526.6 405 67.4
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.7e-147 526.6 405 67.4
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.3e-147 526.2 403 69.0
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 8.6e-147 524.2 406 67.0
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 3.6e-145 518.8 406 66.7
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.8e-144 516.5 403 65.5
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 5.2e-144 515.0 408 73.0
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 6.8e-144 514.6 407 66.3
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 1.2e-143 513.8 401 68.3
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 2.0e-143 513.1 398 65.1
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 3.4e-143 512.3 405 67.4
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 4.4e-143 511.9 405 64.4
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 7.6e-143 511.1 391 69.3
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 1.7e-142 510.0 404 64.9
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 2.2e-142 509.6 387 69.0
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 8.4e-142 507.7 440 63.4
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 5.4e-141 505.0 406 73.6
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 5.4e-141 505.0 407 73.5
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 2.7e-140 502.7 399 63.9
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 3.5e-140 502.3 405 63.2
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.3e-139 500.4 400 65.2
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 5.1e-139 498.4 399 66.7
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 1.1e-138 497.3 414 63.8
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 4.3e-138 495.4 409 65.0
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 8.1e-137 491.1 406 64.0
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 5.2e-136 488.4 396 64.9
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 6.9e-136 488.0 405 72.3
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 9.0e-136 487.6 402 64.2
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 1.3e-134 483.8 417 60.9
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.3e-134 483.8 443 60.0
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 1.7e-134 483.4 443 59.4
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 4.9e-134 481.9 384 64.1
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 1.9e-133 479.9 432 64.8
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 1.9e-133 479.9 400 62.8
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 3.2e-133 479.2 463 57.0
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 2.7e-132 476.1 449 58.1
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.0e-131 474.2 380 65.0
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.0e-131 474.2 426 59.6
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 3.0e-131 472.6 445 58.7
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 3.0e-131 472.6 427 60.2
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 3.9e-131 472.2 423 68.6
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 4.3e-130 468.8 453 56.7
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 7.3e-130 468.0 303 75.6
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 9.6e-130 467.6 455 56.9
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 9.6e-130 467.6 448 66.3
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.6e-129 466.8 393 63.6
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 1.6e-129 466.8 455 56.9
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 1.6e-129 466.8 367 65.7
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.6e-129 465.7 384 63.0
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 6.2e-129 464.9 438 58.2
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 2.4e-128 463.0 448 57.1
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 6.9e-128 461.5 448 57.6
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 2.0e-127 459.9 418 60.3
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 4.5e-127 458.8 449 57.2
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 5.8e-127 458.4 450 56.2
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 1.7e-126 456.8 399 57.9
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 2.9e-126 456.1 376 74.2
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 3.8e-126 455.7 374 64.4
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 4.9e-126 455.3 352 68.2
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 1.9e-125 453.4 426 58.7
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 2.1e-124 449.9 446 57.2
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 2.1e-124 449.9 446 57.2
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.7e-124 449.5 384 61.7
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 1.3e-123 447.2 284 77.8
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.9e-122 443.4 398 58.8
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 2.5e-122 443.0 409 59.7
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 2.4e-120 436.4 300 71.7
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 1.3e-118 430.6 400 57.0
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 2.9e-118 429.5 409 58.9
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 1.1e-117 427.6 403 59.3
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 1.9e-117 426.8 449 54.3
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 3.2e-117 426.0 401 60.1
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.0e-115 421.0 399 55.9
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 1.8e-115 420.2 405 55.8
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 3.3e-114 416.0 410 55.9
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 1.1e-112 411.0 396 54.5
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 1.8e-112 410.2 301 70.8
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 1.8e-112 410.2 301 70.8
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.1e-112 409.5 386 60.1
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 9.0e-112 407.9 386 59.6
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 9.0e-112 407.9 386 59.6
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.5e-111 407.1 386 59.6
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.9e-110 402.9 386 59.1
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 8.4e-110 401.4 412 55.8
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 1.6e-100 370.5 407 51.4
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 3.9e-99 365.9 270 67.8
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 8.2e-97 358.2 404 49.8
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 1.1e-96 357.8 301 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 2.4e-88 330.1 334 53.9
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 4.1e-88 329.3 255 66.7
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 4.4e-82 309.3 411 46.5
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 1.7e-81 307.4 300 53.7
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 8.5e-78 295.0 277 57.4
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 6.3e-73 278.9 259 58.3
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.7e-65 254.2 258 52.7
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 2.4e-64 250.4 157 80.9
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 6.1e-60 235.7 255 50.6
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.1e-56 224.9 150 72.0
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 5.0e-54 216.1 148 74.3
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 1.1e-53 214.9 364 37.4
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.0e-51 206.5 128 81.2
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 1.3e-46 191.4 124 77.4
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.2e-42 178.3 115 74.8
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.8e-36 157.1 178 49.4
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.0e-30 138.7 79 81.0
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.3e-22 111.7 147 46.3
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 1.1e-21 108.6 73 69.9
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 4.6e-15 86.7 66 68.2
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 1.1e-11 75.5 408 21.6
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 6.9e-11 72.8 70 54.3
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 4.9e-09 66.6 52 67.3
CiPaw.13G018400 Carya illinoinensis HOM05D005841 ORTHO05D007132 1.4e-08 65.1 41 82.9
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 1.4e-08 65.1 49 71.4


User provided reference genes

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