Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p022349 Quercus lobata HOM05D007159 ORTHO05D009068 2.3e-117 425.6 223 100.0
CiPaw.13G018000 Carya illinoinensis HOM05D007159 ORTHO05D009068 2.9e-72 275.8 220 70.0
Ciclev10002366m.g Citrus clementina HOM05D007159 ORTHO05D009068 7.0e-66 254.6 222 67.1
Manes.11G009800 Manihot esculenta HOM05D007159 ORTHO05D009068 2.8e-62 242.7 224 67.9
Thecc.10G133500 Theobroma cacao HOM05D007159 ORTHO05D009068 6.2e-62 241.5 235 60.9
arahy.Tifrunner.gnm1.ann1.XLH660 Arachis hypogaea HOM05D007159 ORTHO05D009068 3.1e-61 239.2 217 65.0
Duzib128G1689 Durio zibethinus HOM05D007159 ORTHO05D009068 3.1e-61 239.2 166 77.7
Potri.003G190101 Populus trichocarpa HOM05D007159 ORTHO05D009068 5.2e-61 238.4 191 71.7
GSVIVG01004028001 Vitis vinifera HOM05D007159 ORTHO05D009068 8.9e-61 237.7 219 61.6
Medtr3g011770 Medicago truncatula HOM05D007159 ORTHO05D009068 2.0e-60 236.5 192 66.7
COL.COLO4_32863 Corchorus olitorius HOM05D007159 ORTHO05D009068 3.7e-59 232.3 135 86.7
Gohir.A10G191800 Gossypium hirsutum HOM05D007159 ORTHO05D009068 4.9e-59 231.9 205 67.3
TPR.G30403 Trifolium pratense HOM05D007159 ORTHO05D009068 4.9e-59 231.9 225 60.0
Lj3g0023531 Lotus japonicus HOM05D007159 ORTHO05D009068 1.4e-58 230.3 220 60.0
MD02G1270600 Malus domestica HOM05D007159 ORTHO05D009068 2.4e-58 229.6 219 62.1
Gorai.011G223700 Gossypium raimondii HOM05D007159 ORTHO05D009068 4.1e-58 228.8 207 65.7
Phvul.005G013300 Phaseolus vulgaris HOM05D007159 ORTHO05D009068 5.4e-58 228.4 159 74.8
RcHm_v2.0_Chr3g0462781 Rosa chinensis HOM05D007159 ORTHO05D009068 5.4e-58 228.4 185 68.6
GSVIVG01012409001 Vitis vinifera HOM05D007159 ORTHO05D009068 7.0e-58 228.0 143 81.1
Lalb_Chr18g0048161 Lupinus albus HOM05D007159 ORTHO05D009068 9.2e-58 227.6 200 62.5
Eucgr.G03186 Eucalyptus grandis HOM05D007159 ORTHO05D009068 2.0e-57 226.5 161 75.8
GSVIVG01012445001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.7e-57 226.1 143 80.4
VMungo1080G1031 Vigna mungo HOM05D007159 ORTHO05D009068 4.6e-57 225.3 148 77.0
Hund06845 Selenicereus undatus HOM05D007159 ORTHO05D009068 1.0e-56 224.2 227 57.3
GSVIVG01004020001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.3e-56 223.0 143 79.0
Sopen06g021330 Solanum pennellii HOM05D007159 ORTHO05D009068 3.0e-56 222.6 182 64.8
Glyma.04G126100 Glycine max HOM05D007159 ORTHO05D009068 6.6e-56 221.5 159 72.3
THA.LOC104824199 Tarenaya hassleriana HOM05D007159 ORTHO05D009068 8.6e-56 221.1 197 65.0
TWI63G1065 Tripterygium wilfordii HOM05D007159 ORTHO05D009068 1.5e-55 220.3 174 69.5
PGSC0003DMG402002094 Solanum tuberosum HOM05D007159 ORTHO05D009068 2.5e-55 219.5 179 65.4
Solyc06g061130.4 Solanum lycopersicum HOM05D007159 ORTHO05D009068 3.3e-55 219.2 173 66.5
TAR623G0509 Trochodendron aralioides HOM05D007159 ORTHO05D009068 3.6e-54 215.7 260 52.7
FvH4_6g11251 Fragaria vesca HOM05D007159 ORTHO05D009068 1.1e-53 214.2 180 66.1
FAN14G5227 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.1e-53 214.2 180 66.1
FAN02G0787 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.8e-53 213.4 202 60.4
FAN14G2984 Fragaria x ananassa HOM05D007159 ORTHO05D009068 5.2e-53 211.8 180 65.6
Gohir.D10G199566 Gossypium hirsutum HOM05D007159 ORTHO05D009068 5.2e-53 211.8 122 85.2
Psat5g224840 Pisum sativum HOM05D007159 ORTHO05D009068 6.8e-53 211.5 131 80.2
AUR62035525 Chenopodium quinoa HOM05D007159 ORTHO05D009068 2.0e-52 209.9 159 70.4
Nn2g14588 Nelumbo nucifera HOM05D007159 ORTHO05D009068 2.6e-52 209.5 165 66.7
Nitab4.5_0006066g0020 Nicotiana tabacum HOM05D007159 ORTHO05D009068 7.5e-52 208.0 133 76.7
MSTRG.20491 Avicennia marina HOM05D007159 ORTHO05D009068 9.8e-52 207.6 221 56.6
Cc00_g21840 Coffea canephora HOM05D007159 ORTHO05D009068 1.3e-51 207.2 136 75.0
SalBow5G2583 Salvia bowleyana HOM05D007159 ORTHO05D009068 1.3e-51 207.2 188 61.2
Nitab4.5_0000256g0440 Nicotiana tabacum HOM05D007159 ORTHO05D009068 1.7e-51 206.8 219 57.1
Sp4g21050 Schrenkiella parvula HOM05D007159 ORTHO05D009068 1.7e-51 206.8 148 73.6
Rhsim08G0052600 Rhododendron simsii HOM05D007159 ORTHO05D009068 2.2e-51 206.5 221 53.8
Carub.0004s2069 Capsella rubella HOM05D007159 ORTHO05D009068 6.4e-51 204.9 148 73.6
CARHR133370 Cardamine hirsuta HOM05D007159 ORTHO05D009068 8.3e-51 204.5 157 70.1
SGA_v2.0_scaffold141G35535 Striga asiatica HOM05D007159 ORTHO05D009068 8.3e-51 204.5 154 72.1
Thhalv10017229m.g Eutrema salsugineum HOM05D007159 ORTHO05D009068 1.1e-50 204.1 139 75.5
A03p21540 Brassica napus HOM05D007159 ORTHO05D009068 1.9e-50 203.4 135 77.0
C03p25530 Brassica napus HOM05D007159 ORTHO05D009068 1.9e-50 203.4 155 69.7
PGR031G3393 Punica granatum HOM05D007159 ORTHO05D009068 3.2e-50 202.6 161 70.2
BraA03t11390Z Brassica rapa HOM05D007159 ORTHO05D009068 7.1e-50 201.4 148 71.6
PSO339G3610 Papaver somniferum HOM05D007159 ORTHO05D009068 9.2e-50 201.1 194 58.2
BcaNung04831 Brassica carinata HOM05D007159 ORTHO05D009068 1.2e-49 200.7 174 66.1
Migut.B01174 Erythranthe guttata HOM05D007159 ORTHO05D009068 1.2e-49 200.7 162 69.1
Zm00001eb314250 Zea mays HOM05D007159 ORTHO05D009068 1.2e-49 200.7 138 71.7
BolC3t14940H Brassica oleracea HOM05D007159 ORTHO05D009068 2.1e-49 199.9 146 71.9
ATR0598G156 Amborella trichopoda HOM05D007159 ORTHO05D009068 2.7e-49 199.5 171 64.3
AL4G35990 Arabidopsis lyrata HOM05D007159 ORTHO05D009068 2.7e-49 199.5 157 68.8
AT2G38695 Arabidopsis thaliana HOM05D007159 ORTHO05D009068 1.7e-48 196.8 169 64.5
Aqoxy1G00016 Aquilegia oxysepala HOM05D007159 ORTHO05D009068 3.9e-48 195.7 124 78.2
Actinidia35758 Actinidia chinensis HOM05D007159 ORTHO05D009068 4.3e-47 192.2 118 81.4
Dinv23933 Davidia involucrata HOM05D007159 ORTHO05D009068 9.5e-47 191.0 173 63.6
EL10Ac4g08838 Beta vulgaris HOM05D007159 ORTHO05D009068 6.8e-45 184.9 113 81.4
ClCG11G012910 Citrullus lanatus HOM05D007159 ORTHO05D009068 8.9e-45 184.5 120 76.7
HPP92_004369 Vanilla planifolia HOM05D007159 ORTHO05D009068 3.4e-44 182.6 214 50.0
Aa31sc689G20 Aethionema arabicum HOM05D007159 ORTHO05D009068 7.6e-44 181.4 163 62.0
Lsat_1_v5_gn_7_31321 Lactuca sativa HOM05D007159 ORTHO05D009068 7.6e-44 181.4 117 75.2
Aa31sc26G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 2.2e-43 179.9 152 63.8
ECA236G3649 Erigeron canadensis HOM05D007159 ORTHO05D009068 2.9e-43 179.5 131 68.7
HanXRQChr15g0480981 Helianthus annuus HOM05D007159 ORTHO05D009068 1.4e-42 177.2 135 69.6
CsaV3_5G029340 Cucumis sativus L. HOM05D007159 ORTHO05D009068 5.4e-42 175.3 174 58.6
arahy.Tifrunner.gnm1.ann1.T46YUH Arachis hypogaea HOM05D007159 ORTHO05D009068 6.0e-41 171.8 141 69.5
SEGI_36712 Sequoiadendron giganteum HOM05D007159 ORTHO05D009068 6.0e-41 171.8 122 68.9
Ah.06g191300 Amaranthus hybridus HOM05D007159 ORTHO05D009068 1.2e-36 157.5 166 57.2
Mapoly0102s0032 Marchantia polymorpha HOM05D007159 ORTHO05D009068 1.2e-36 157.5 119 66.4
Peaxi162Scf00615g00514 Petunia axillaris HOM05D007159 ORTHO05D009068 5.8e-36 155.2 90 84.4
AagrBONN_evm.TU.Sc2ySwM_344.1718 Anthoceros agrestis HOM05D007159 ORTHO05D009068 1.7e-35 153.7 188 46.3
Sc09g0004690 Simmondsia chinensis HOM05D007159 ORTHO05D009068 4.9e-35 152.1 92 83.7
DCAR_001925 Daucus carota HOM05D007159 ORTHO05D009068 1.4e-34 150.6 120 65.0
SMO137G0134 Selaginella moellendorffii HOM05D007159 ORTHO05D009068 1.9e-34 150.2 119 62.2
Actinidia39400 Actinidia chinensis HOM05D007159 ORTHO05D009068 4.2e-34 149.1 84 86.9
FAN05G1155 Fragaria x ananassa HOM05D007159 ORTHO05D009068 5.4e-34 148.7 207 50.2
GSVIVG01012423001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.1e-33 146.7 81 90.1
Prupe.2G049700 Prunus persica HOM05D007159 ORTHO05D009068 3.5e-33 146.0 171 52.6
GSVIVG01012347001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.3e-32 143.3 92 79.3
AUR62041642 Chenopodium quinoa HOM05D007159 ORTHO05D009068 3.9e-32 142.5 121 63.6
CBR_g8263 Chara braunii HOM05D007159 ORTHO05D009068 4.3e-31 139.0 119 58.8
GSVIVG01012437001 Vitis vinifera HOM05D007159 ORTHO05D009068 8.1e-30 134.8 143 56.6
MELO3C034053.2 Cucumis melo HOM05D007159 ORTHO05D009068 2.4e-29 133.3 98 71.4
Oeu058665.1 Olea europaea HOM05D007159 ORTHO05D009068 5.8e-28 128.6 71 87.3
Aa31sc19G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 1.4e-26 124.0 80 78.8
Sed0014969 Sechium edule HOM05D007159 ORTHO05D009068 9.3e-26 121.3 183 45.9
QL04p022306 Quercus lobata HOM05D007159 ORTHO05D009068 2.1e-25 120.2 91 73.6
unitig_749.g13795 Utricularia gibba HOM05D007159 ORTHO05D009068 1.8e-24 117.1 80 75.0
FAN09G0838 Fragaria x ananassa HOM05D007159 ORTHO05D009068 6.2e-22 108.6 185 44.9
Atru.chr12.1193 Acer truncatum HOM05D007159 ORTHO05D009068 4.2e-18 95.9 49 93.9
CANSAT78G1490 Cannabis sativa HOM05D007159 ORTHO05D009068 7.9e-17 91.7 126 46.0
Sed0016161 Sechium edule HOM05D007159 ORTHO05D009068 5.1e-16 89.0 67 67.2
Glyma.06G312500 Glycine max HOM05D007159 ORTHO05D009068 3.3e-15 86.3 64 65.6
PRCOL_00002415 Prasinoderma coloniale HOM05D007159 ORTHO05D009068 5.6e-15 85.5 120 44.2
Haze_02958 Corylus avellana HOM05D007159 ORTHO05D009068 2.2e-11 73.6 88 53.4
MCO13G186 Micromonas commoda HOM05D007159 ORTHO05D009068 4.9e-11 72.4 118 40.7
QL04p022221 Quercus lobata HOM05D000002 ORTHO05D000001 1.8e-08 63.9 102 50.0
Os04g0600100 Oryza sativa ssp. japonica HOM05D009116 ORTHO05D011299 1.5e-07 60.8 112 32.1
Rhsim03G0219300 Rhododendron simsii HOM05D009116 ORTHO05D011299 9.6e-07 58.2 167 28.7
Mapoly0065s0044 Marchantia polymorpha HOM05D009116 ORTHO05D011299 1.3e-06 57.8 143 31.5
Hund27206 Selenicereus undatus HOM05D009116 ORTHO05D011299 2.8e-06 56.6 173 31.8
CDE02G3635 Ceratophyllum demersum HOM05D009116 ORTHO05D011299 4.8e-06 55.8 116 32.8
MSTRG.26944 Avicennia marina HOM05D009116 ORTHO05D011299 8.2e-06 55.1 186 28.0


User provided reference genes

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