Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p022306 Quercus lobata HOM05D007159 ORTHO05D009068 7.4e-33 143.3 72 100.0
arahy.Tifrunner.gnm1.ann1.T46YUH Arachis hypogaea HOM05D007159 ORTHO05D009068 2.7e-27 124.8 70 85.7
QL04p022349 Quercus lobata HOM05D007159 ORTHO05D009068 3.0e-26 121.3 91 73.6
Duzib128G1689 Durio zibethinus HOM05D007159 ORTHO05D009068 2.8e-24 114.8 92 66.3
GSVIVG01004028001 Vitis vinifera HOM05D007159 ORTHO05D009068 3.7e-24 114.4 92 66.3
GSVIVG01012409001 Vitis vinifera HOM05D007159 ORTHO05D009068 3.7e-24 114.4 92 66.3
Ciclev10002366m.g Citrus clementina HOM05D007159 ORTHO05D009068 6.2e-24 113.6 92 66.3
Ah.06g191300 Amaranthus hybridus HOM05D007159 ORTHO05D009068 1.4e-23 112.5 70 75.7
GSVIVG01012445001 Vitis vinifera HOM05D007159 ORTHO05D009068 1.4e-23 112.5 92 65.2
arahy.Tifrunner.gnm1.ann1.XLH660 Arachis hypogaea HOM05D007159 ORTHO05D009068 1.8e-23 112.1 92 65.2
COL.COLO4_32863 Corchorus olitorius HOM05D007159 ORTHO05D009068 2.4e-23 111.7 92 64.1
GSVIVG01004020001 Vitis vinifera HOM05D007159 ORTHO05D009068 4.0e-23 110.9 92 64.1
Gohir.A10G191800 Gossypium hirsutum HOM05D007159 ORTHO05D009068 9.0e-23 109.8 92 64.1
Medtr3g011770 Medicago truncatula HOM05D007159 ORTHO05D009068 9.0e-23 109.8 92 63.0
Potri.003G190101 Populus trichocarpa HOM05D007159 ORTHO05D009068 1.5e-22 109.0 92 64.1
Thecc.10G133500 Theobroma cacao HOM05D007159 ORTHO05D009068 1.5e-22 109.0 92 63.0
CiPaw.13G018000 Carya illinoinensis HOM05D007159 ORTHO05D009068 2.0e-22 108.6 92 64.1
Gohir.D10G199566 Gossypium hirsutum HOM05D007159 ORTHO05D009068 2.6e-22 108.2 92 63.0
MD02G1270600 Malus domestica HOM05D007159 ORTHO05D009068 2.6e-22 108.2 92 63.0
Manes.11G009800 Manihot esculenta HOM05D007159 ORTHO05D009068 4.5e-22 107.5 90 66.7
PGSC0003DMG402002094 Solanum tuberosum HOM05D007159 ORTHO05D009068 7.6e-22 106.7 92 60.9
THA.LOC104824199 Tarenaya hassleriana HOM05D007159 ORTHO05D009068 7.6e-22 106.7 92 62.0
Solyc06g061130.4 Solanum lycopersicum HOM05D007159 ORTHO05D009068 1.3e-21 105.9 92 60.9
Sopen06g021330 Solanum pennellii HOM05D007159 ORTHO05D009068 1.3e-21 105.9 92 60.9
Lalb_Chr18g0048161 Lupinus albus HOM05D007159 ORTHO05D009068 1.7e-21 105.5 92 62.0
RcHm_v2.0_Chr3g0462781 Rosa chinensis HOM05D007159 ORTHO05D009068 2.2e-21 105.1 92 60.9
Phvul.005G013300 Phaseolus vulgaris HOM05D007159 ORTHO05D009068 3.8e-21 104.4 92 60.9
VMungo1080G1031 Vigna mungo HOM05D007159 ORTHO05D009068 3.8e-21 104.4 92 59.8
SalBow5G2583 Salvia bowleyana HOM05D007159 ORTHO05D009068 5.0e-21 104.0 92 58.7
A03p21540 Brassica napus HOM05D007159 ORTHO05D009068 6.5e-21 103.6 92 62.0
BraA03t11390Z Brassica rapa HOM05D007159 ORTHO05D009068 6.5e-21 103.6 92 62.0
Gorai.011G223700 Gossypium raimondii HOM05D007159 ORTHO05D009068 6.5e-21 103.6 92 60.9
Eucgr.G03186 Eucalyptus grandis HOM05D007159 ORTHO05D009068 8.4e-21 103.2 92 63.0
Peaxi162Scf00615g00514 Petunia axillaris HOM05D007159 ORTHO05D009068 8.4e-21 103.2 91 60.4
Psat5g224840 Pisum sativum HOM05D007159 ORTHO05D009068 8.4e-21 103.2 92 58.7
TPR.G30403 Trifolium pratense HOM05D007159 ORTHO05D009068 8.4e-21 103.2 92 60.9
TWI63G1065 Tripterygium wilfordii HOM05D007159 ORTHO05D009068 8.4e-21 103.2 92 60.9
Cc00_g21840 Coffea canephora HOM05D007159 ORTHO05D009068 1.1e-20 102.8 92 59.8
BcaNung04831 Brassica carinata HOM05D007159 ORTHO05D009068 1.4e-20 102.4 92 60.9
C03p25530 Brassica napus HOM05D007159 ORTHO05D009068 1.4e-20 102.4 92 60.9
BolC3t14940H Brassica oleracea HOM05D007159 ORTHO05D009068 1.4e-20 102.4 92 60.9
Lj3g0023531 Lotus japonicus HOM05D007159 ORTHO05D009068 1.4e-20 102.4 92 58.7
Carub.0004s2069 Capsella rubella HOM05D007159 ORTHO05D009068 1.9e-20 102.1 92 59.8
CARHR133370 Cardamine hirsuta HOM05D007159 ORTHO05D009068 1.9e-20 102.1 92 59.8
Sp4g21050 Schrenkiella parvula HOM05D007159 ORTHO05D009068 1.9e-20 102.1 92 59.8
Rhsim08G0052600 Rhododendron simsii HOM05D007159 ORTHO05D009068 4.2e-20 100.9 92 60.9
AL4G35990 Arabidopsis lyrata HOM05D007159 ORTHO05D009068 5.5e-20 100.5 92 58.7
Thhalv10017229m.g Eutrema salsugineum HOM05D007159 ORTHO05D009068 7.1e-20 100.1 92 58.7
SGA_v2.0_scaffold141G35535 Striga asiatica HOM05D007159 ORTHO05D009068 7.1e-20 100.1 92 58.7
AT2G38695 Arabidopsis thaliana HOM05D007159 ORTHO05D009068 1.2e-19 99.4 92 57.6
Hund06845 Selenicereus undatus HOM05D007159 ORTHO05D009068 1.2e-19 99.4 92 57.6
MSTRG.20491 Avicennia marina HOM05D007159 ORTHO05D009068 2.7e-19 98.2 92 56.5
Glyma.04G126100 Glycine max HOM05D007159 ORTHO05D009068 3.5e-19 97.8 92 56.5
EL10Ac4g08838 Beta vulgaris HOM05D007159 ORTHO05D009068 7.9e-19 96.7 92 57.6
Migut.B01174 Erythranthe guttata HOM05D007159 ORTHO05D009068 1.0e-18 96.3 92 58.7
FvH4_6g11251 Fragaria vesca HOM05D007159 ORTHO05D009068 1.0e-18 96.3 92 58.7
FAN02G0787 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.0e-18 96.3 92 58.7
FAN14G2984 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.0e-18 96.3 92 58.7
FAN14G5227 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.0e-18 96.3 92 58.7
Nn2g14588 Nelumbo nucifera HOM05D007159 ORTHO05D009068 1.0e-18 96.3 92 57.6
AUR62041642 Chenopodium quinoa HOM05D007159 ORTHO05D009068 1.3e-18 95.9 72 68.1
Nitab4.5_0000256g0440 Nicotiana tabacum HOM05D007159 ORTHO05D009068 1.3e-18 95.9 84 59.5
Nitab4.5_0006066g0020 Nicotiana tabacum HOM05D007159 ORTHO05D009068 1.3e-18 95.9 84 59.5
Zm00001eb314250 Zea mays HOM05D007159 ORTHO05D009068 1.3e-18 95.9 92 55.4
ATR0598G156 Amborella trichopoda HOM05D007159 ORTHO05D009068 2.3e-18 95.1 92 56.5
Aqoxy1G00016 Aquilegia oxysepala HOM05D007159 ORTHO05D009068 3.0e-18 94.7 92 55.4
GSVIVG01012423001 Vitis vinifera HOM05D007159 ORTHO05D009068 8.7e-18 93.2 82 64.6
AUR62035525 Chenopodium quinoa HOM05D007159 ORTHO05D009068 1.1e-17 92.8 92 55.4
PSO339G3610 Papaver somniferum HOM05D007159 ORTHO05D009068 1.1e-17 92.8 92 54.3
GSVIVG01012347001 Vitis vinifera HOM05D007159 ORTHO05D009068 1.1e-17 92.8 91 59.3
HPP92_004369 Vanilla planifolia HOM05D007159 ORTHO05D009068 5.7e-17 90.5 92 53.3
PGR031G3393 Punica granatum HOM05D007159 ORTHO05D009068 7.4e-17 90.1 92 55.4
Actinidia35758 Actinidia chinensis HOM05D007159 ORTHO05D009068 1.6e-16 89.0 87 56.3
GSVIVG01012437001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.2e-16 88.6 51 86.3
TAR623G0509 Trochodendron aralioides HOM05D007159 ORTHO05D009068 6.3e-16 87.0 123 46.3
ClCG11G012910 Citrullus lanatus HOM05D007159 ORTHO05D009068 1.8e-15 85.5 89 52.8
MELO3C034053.2 Cucumis melo HOM05D007159 ORTHO05D009068 4.1e-15 84.3 100 52.0
Aa31sc26G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 9.0e-15 83.2 108 45.4
Aa31sc689G20 Aethionema arabicum HOM05D007159 ORTHO05D009068 1.2e-14 82.8 92 51.1
Lsat_1_v5_gn_7_31321 Lactuca sativa HOM05D007159 ORTHO05D009068 3.4e-14 81.3 88 48.9
HanXRQChr15g0480981 Helianthus annuus HOM05D007159 ORTHO05D009068 5.0e-13 77.4 91 49.5
SEGI_36712 Sequoiadendron giganteum HOM05D007159 ORTHO05D009068 8.5e-13 76.6 92 47.8
QL04p022221 Quercus lobata HOM05D000002 ORTHO05D000001 1.4e-12 75.9 66 69.7
FAN09G0838 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.9e-12 75.5 62 66.1
SMO137G0134 Selaginella moellendorffii HOM05D007159 ORTHO05D009068 4.2e-12 74.3 92 45.7
FAN05G1155 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.2e-11 72.8 51 74.5
CANSAT78G1490 Cannabis sativa HOM05D007159 ORTHO05D009068 2.1e-11 72.0 52 65.4
Aa31sc19G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 1.8e-10 68.9 82 50.0
Mapoly0102s0032 Marchantia polymorpha HOM05D007159 ORTHO05D009068 2.3e-10 68.6 90 43.3
CsaV3_5G029340 Cucumis sativus L. HOM05D007159 ORTHO05D009068 5.1e-10 67.4 85 47.1
AagrBONN_evm.TU.Sc2ySwM_344.1718 Anthoceros agrestis HOM05D007159 ORTHO05D009068 6.7e-10 67.0 92 39.1
unitig_749.g13795 Utricularia gibba HOM05D007159 ORTHO05D009068 2.0e-09 65.5 80 50.0
Sed0016161 Sechium edule HOM05D007159 ORTHO05D009068 9.7e-09 63.2 57 57.9
ECA236G3649 Erigeron canadensis HOM05D007159 ORTHO05D009068 6.3e-08 60.5 69 43.5
CBR_g8263 Chara braunii HOM05D007159 ORTHO05D009068 1.1e-07 59.7 92 40.2
DCAR_001925 Daucus carota HOM05D007159 ORTHO05D009068 5.3e-07 57.4 89 40.4
Sc09g0004690 Simmondsia chinensis HOM05D007159 ORTHO05D009068 7.7e-06 53.5 63 46.0


User provided reference genes

Program Settings