Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p021747 Quercus lobata HOM05D007826 ORTHO05D009921 7.5e-59 230.3 118 100.0
QL04p021763 Quercus lobata HOM05D007826 ORTHO05D009921 1.3e-39 166.4 95 91.6
CiPaw.13G016900 Carya illinoinensis HOM05D007826 ORTHO05D009921 4.6e-24 114.8 96 64.6
Cfa010966 Carpinus fangiana HOM05D007826 ORTHO05D009921 1.6e-21 106.3 89 64.0
Haze_02971 Corylus avellana HOM05D007826 ORTHO05D009921 2.8e-21 105.5 89 62.9
Dinv02119 Davidia involucrata HOM05D007826 ORTHO05D009921 1.2e-19 100.1 98 59.2
arahy.Tifrunner.gnm1.ann1.B3NFFH Arachis hypogaea HOM05D007826 ORTHO05D009921 1.5e-19 99.8 89 59.6
RcHm_v2.0_Chr1g0328201 Rosa chinensis HOM05D007826 ORTHO05D009921 2.0e-19 99.4 72 65.3
ClCG11G013060 Citrullus lanatus HOM05D007826 ORTHO05D009921 3.4e-19 98.6 98 53.1
CsaV3_5G029550 Cucumis sativus L. HOM05D007826 ORTHO05D009921 7.6e-19 97.4 92 53.3
Thecc.10G138900 Theobroma cacao HOM05D007826 ORTHO05D009921 7.6e-19 97.4 101 53.5
arahy.Tifrunner.gnm1.ann1.46TCXF Arachis hypogaea HOM05D007826 ORTHO05D009921 1.3e-18 96.7 90 58.9
Hma1.2p1_0233F.1_g098320 Hydrangea macrophylla HOM05D007826 ORTHO05D009921 1.7e-18 96.3 68 69.1
Prupe.2G045900 Prunus persica HOM05D007826 ORTHO05D009921 2.2e-18 95.9 81 63.0
MELO3C011799.2 Cucumis melo HOM05D007826 ORTHO05D009921 2.9e-18 95.5 92 54.3
FvH4_7g04131 Fragaria vesca HOM05D007826 ORTHO05D009921 3.8e-18 95.1 94 55.3
MD02G1275100 Malus domestica HOM05D007826 ORTHO05D009921 3.8e-18 95.1 87 57.5
TAR636G3365 Trochodendron aralioides HOM05D007826 ORTHO05D009921 6.4e-18 94.4 93 58.1
PGR044G2215 Punica granatum HOM05D007826 ORTHO05D009921 8.4e-18 94.0 85 55.3
Manes.04G155500 Manihot esculenta HOM05D007826 ORTHO05D009921 1.4e-17 93.2 92 54.3
Sed0024773 Sechium edule HOM05D007826 ORTHO05D009921 1.4e-17 93.2 95 52.6
Cpa.g.sc228.7 Carica papaya HOM05D007826 ORTHO05D009921 3.2e-17 92.0 101 56.4
Glyma.06G310800 Glycine max HOM05D007826 ORTHO05D009921 5.4e-17 91.3 76 59.2
Lalb_Chr15g0079201 Lupinus albus HOM05D007826 ORTHO05D009921 9.3e-17 90.5 87 54.0
Manes.11G008600 Manihot esculenta HOM05D007826 ORTHO05D009921 9.3e-17 90.5 68 64.7
Sabra03G0143200 Salix brachista HOM05D007826 ORTHO05D009921 2.7e-16 89.0 64 64.1
CSS0030848 Camellia sinensis var. sinensis HOM05D007826 ORTHO05D009921 3.5e-16 88.6 66 68.2
CSS0043932 Camellia sinensis var. sinensis HOM05D007826 ORTHO05D009921 3.5e-16 88.6 66 68.2
Duzib114G0936 Durio zibethinus HOM05D007826 ORTHO05D009921 3.5e-16 88.6 99 52.5
TWI38G1292 Tripterygium wilfordii HOM05D007826 ORTHO05D009921 3.5e-16 88.6 82 53.7
Potri.003G192300 Populus trichocarpa HOM05D007826 ORTHO05D009921 4.6e-16 88.2 64 65.6
Atru.chr12.1205 Acer truncatum HOM05D007826 ORTHO05D009921 7.9e-16 87.4 72 62.5
GSVIVG01036583001 Vitis vinifera HOM05D007826 ORTHO05D009921 1.0e-15 87.0 76 57.9
PSO384G0702 Papaver somniferum HOM05D007826 ORTHO05D009921 2.3e-15 85.9 95 51.6
Phvul.005G015800 Phaseolus vulgaris HOM05D007826 ORTHO05D009921 3.0e-15 85.5 65 63.1
Sabra01G0023300 Salix brachista HOM05D007826 ORTHO05D009921 5.1e-15 84.7 64 57.8
Ca_14209_v3 Cicer arietinum L. HOM05D007826 ORTHO05D009921 6.7e-15 84.3 91 51.6
Eucgr.J00084 Eucalyptus grandis HOM05D007826 ORTHO05D009921 8.7e-15 84.0 94 52.1
vmacro13796 Vaccinium macrocarpon HOM05D007826 ORTHO05D009921 1.1e-14 83.6 63 65.1
Rhsim07G0072900 Rhododendron simsii HOM05D007826 ORTHO05D009921 1.5e-14 83.2 66 63.6
Hund15767 Selenicereus undatus HOM05D007826 ORTHO05D009921 2.5e-14 82.4 98 45.9
VMungo1080G0241 Vigna mungo HOM05D007826 ORTHO05D009921 2.5e-14 82.4 62 62.9
ATR0307G128 Amborella trichopoda HOM05D007826 ORTHO05D009921 3.3e-14 82.0 97 45.4
PSO339G1114 Papaver somniferum HOM05D007826 ORTHO05D009921 5.6e-14 81.3 95 50.5
Sc11g0006210 Simmondsia chinensis HOM05D007826 ORTHO05D009921 5.6e-14 81.3 96 43.8
Ciclev10000762m.g Citrus clementina HOM05D007826 ORTHO05D009921 7.4e-14 80.9 61 63.9
Potri.001G032800 Populus trichocarpa HOM05D007826 ORTHO05D009921 1.6e-13 79.7 71 50.7
Gohir.A06G174000 Gossypium hirsutum HOM05D007826 ORTHO05D009921 2.1e-13 79.3 85 51.8
TPR.G9966 Trifolium pratense HOM05D007826 ORTHO05D009921 2.1e-13 79.3 78 53.8
EL10Ac2g02721 Beta vulgaris HOM05D007826 ORTHO05D009921 2.8e-13 79.0 76 52.6
Psat5g224040 Pisum sativum HOM05D007826 ORTHO05D009921 3.7e-13 78.6 93 48.4
Gorai.010G215500 Gossypium raimondii HOM05D007826 ORTHO05D009921 8.1e-13 77.4 85 50.6
Ah.12g064790 Amaranthus hybridus HOM05D007826 ORTHO05D009921 1.4e-12 76.6 86 48.8
MBI13_g00897_MAGBIO Magnolia biondii HOM05D007826 ORTHO05D009921 1.4e-12 76.6 79 49.4
Lj3g0023662 Lotus japonicus HOM05D007826 ORTHO05D009921 2.4e-12 75.9 73 54.8
SGA_v2.0_scaffold232G43475 Striga asiatica HOM05D007826 ORTHO05D009921 6.9e-12 74.3 76 50.0
Gohir.D06G184100 Gossypium hirsutum HOM05D007826 ORTHO05D009921 9.0e-12 73.9 85 48.2
THA.LOC104826745 Tarenaya hassleriana HOM05D007826 ORTHO05D009921 1.5e-11 73.2 65 55.4
MSTRG.5081 Avicennia marina HOM05D007826 ORTHO05D009921 2.6e-11 72.4 55 58.2
Migut.N01862 Erythranthe guttata HOM05D007826 ORTHO05D009921 2.6e-11 72.4 55 58.2
Nn7g36978 Nelumbo nucifera HOM05D007826 ORTHO05D009921 4.5e-11 71.6 97 43.3
AUR62032571 Chenopodium quinoa HOM05D007826 ORTHO05D009921 9.9e-11 70.5 83 44.6
Cfa000578 Carpinus fangiana HOM05D032084 ORTHO05D002650 2.7e-08 62.4 60 60.0
Cfa014605 Carpinus fangiana HOM05D032084 ORTHO05D122465 5.1e-07 58.2 60 60.0
Cfa021041 Carpinus fangiana HOM05D032084 ORTHO05D123219 7.4e-06 54.3 66 51.5


User provided reference genes

Program Settings