Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 2.3e-120 435.6 230 100.0
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 8.5e-83 310.8 214 77.6
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 3.2e-82 308.9 228 73.2
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 6.3e-78 294.7 239 68.2
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 7.7e-76 287.7 234 70.5
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 7.7e-76 287.7 234 70.5
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 1.2e-73 280.4 229 69.9
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 8.8e-72 274.2 217 67.7
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 4.4e-71 271.9 240 63.3
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 2.8e-70 269.2 223 67.7
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 6.3e-70 268.1 242 63.2
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 8.3e-70 267.7 208 70.7
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 8.3e-70 267.7 233 68.7
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 1.8e-69 266.5 230 63.0
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 3.1e-69 265.8 215 66.0
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 5.4e-69 265.0 228 63.2
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 5.4e-69 265.0 208 72.6
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 5.4e-69 265.0 203 73.4
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 7.0e-69 264.6 215 65.6
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 7.0e-69 264.6 227 63.0
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 7.0e-69 264.6 212 67.5
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 9.1e-69 264.2 234 67.1
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 2.7e-68 262.7 231 64.9
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 3.5e-68 262.3 204 71.1
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 7.7e-68 261.2 218 65.1
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 1.0e-67 260.8 211 67.3
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 1.3e-67 260.4 204 71.6
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 2.9e-67 259.2 204 71.1
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 2.9e-67 259.2 227 65.6
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 2.9e-67 259.2 227 63.4
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 6.6e-67 258.1 231 64.5
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 8.6e-67 257.7 234 66.2
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 1.5e-66 256.9 229 65.5
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 1.5e-66 256.9 232 62.1
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 2.5e-66 256.1 236 63.1
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 2.5e-66 256.1 235 65.1
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 4.2e-66 255.4 232 61.6
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 5.5e-66 255.0 232 60.8
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 5.5e-66 255.0 231 64.9
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 9.5e-66 254.2 218 63.8
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.6e-65 253.4 236 62.3
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 2.8e-65 252.7 230 63.0
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 2.3e-64 249.6 217 67.7
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 6.8e-64 248.1 236 61.4
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 6.8e-64 248.1 249 55.8
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 1.5e-63 246.9 224 62.1
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 1.5e-63 246.9 220 63.6
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 2.0e-63 246.5 203 64.5
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 2.6e-63 246.1 250 57.2
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 5.7e-63 245.0 228 61.0
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 7.5e-63 244.6 213 65.3
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 2.2e-62 243.0 234 59.0
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 8.3e-62 241.1 213 63.8
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 3.1e-61 239.2 206 68.0
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 3.1e-61 239.2 243 57.2
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 4.1e-61 238.8 225 58.2
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 5.4e-61 238.4 243 58.4
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 1.2e-60 237.3 208 66.8
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 1.2e-60 237.3 227 59.0
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 1.6e-60 236.9 240 59.6
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 2.0e-60 236.5 230 57.0
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 2.0e-60 236.5 212 60.8
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 2.0e-60 236.5 243 57.6
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 3.5e-60 235.7 229 57.6
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 3.5e-60 235.7 243 57.6
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 5.9e-60 235.0 230 57.0
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 7.8e-60 234.6 206 60.2
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 7.8e-60 234.6 206 60.2
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 7.8e-60 234.6 229 57.2
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 7.8e-60 234.6 206 60.2
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 7.8e-60 234.6 228 60.1
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 1.0e-59 234.2 166 71.1
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 1.0e-59 234.2 229 57.2
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 1.0e-59 234.2 229 57.2
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 1.3e-59 233.8 229 57.2
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 8.6e-59 231.1 182 67.0
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 1.5e-58 230.3 187 63.6
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 1.9e-58 229.9 230 59.6
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 2.5e-58 229.6 192 65.1
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 2.5e-58 229.6 170 68.2
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 4.3e-58 228.8 213 59.2
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 7.3e-58 228.0 227 56.4
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 1.2e-57 227.3 182 66.5
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 2.8e-57 226.1 172 66.9
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 2.8e-57 226.1 172 66.9
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 3.6e-57 225.7 207 58.0
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 8.0e-57 224.6 178 68.0
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 8.0e-57 224.6 218 56.0
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.0e-56 224.2 244 55.3
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 3.1e-56 222.6 218 57.3
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 5.2e-56 221.9 206 59.2
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 2.6e-55 219.5 208 57.2
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 3.4e-55 219.2 216 56.5
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 5.8e-55 218.4 240 52.9
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 1.7e-54 216.9 217 60.4
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 2.2e-54 216.5 215 57.2
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 2.4e-53 213.0 235 51.9
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 5.4e-53 211.8 211 57.3
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 7.0e-53 211.5 270 51.1
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 3.5e-52 209.1 243 54.3
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.0e-51 207.6 169 68.0
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 1.1e-50 204.1 168 64.3
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 4.3e-50 202.2 130 75.4
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 7.3e-50 201.4 162 64.2
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 2.6e-47 193.0 131 76.3
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 1.3e-46 190.7 137 73.7
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 1.4e-45 187.2 117 80.3
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 2.4e-45 186.4 124 74.2
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 5.4e-45 185.3 206 55.8
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 1.6e-44 183.7 211 51.2
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 2.3e-43 179.9 160 62.5
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 8.6e-43 177.9 181 55.2
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 7.3e-42 174.9 204 52.9
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 1.6e-41 173.7 152 59.2
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 5.2e-40 168.7 131 67.9
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 1.2e-39 167.5 172 54.7
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 4.4e-39 165.6 182 50.5
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 1.7e-38 163.7 108 75.9
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 5.4e-37 158.7 183 50.3
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 1.4e-32 144.1 206 45.1
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.5e-31 140.6 163 52.8
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 1.9e-29 133.7 110 65.5
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 2.3e-27 126.7 164 49.4
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 1.9e-26 123.6 106 58.5
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 3.9e-19 99.4 100 57.0
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 2.5e-18 96.7 212 36.3
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 2.6e-15 86.7 232 35.3
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 9.9e-15 84.7 105 47.6
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 4.9e-14 82.4 83 56.6
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 3.4e-07 59.7 73 45.2
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 1.7e-06 57.4 59 67.8
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 8.4e-06 55.1 121 41.3


User provided reference genes

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