Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p018250 Quercus lobata HOM05D007621 ORTHO05D009631 0.0e+00 1503.8 756 100.0
Haze_06574 Corylus avellana HOM05D007621 ORTHO05D009631 8.0e-263 910.6 763 63.6
Cfa000351 Carpinus fangiana HOM05D007621 ORTHO05D009631 9.2e-251 870.5 753 62.9
GSVIVG01003190001 Vitis vinifera HOM05D007621 ORTHO05D009631 4.9e-236 821.6 667 64.8
CSS0049226 Camellia sinensis var. sinensis HOM05D007621 ORTHO05D009631 1.4e-235 820.1 656 65.7
TAR624G0533 Trochodendron aralioides HOM05D007621 ORTHO05D009631 7.3e-232 807.7 676 62.6
Dinv40478 Davidia involucrata HOM05D007621 ORTHO05D009631 2.8e-231 805.8 625 67.5
Nn1g03894 Nelumbo nucifera HOM05D007621 ORTHO05D009631 2.2e-228 796.2 678 62.7
Rhsim02G0119600 Rhododendron simsii HOM05D007621 ORTHO05D009631 1.5e-221 773.5 651 63.6
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 2.0e-221 773.1 691 58.9
TWI38G0795 Tripterygium wilfordii HOM05D007621 ORTHO05D009631 5.1e-217 758.4 660 62.0
RcHm_v2.0_Chr5g0006311 Rosa chinensis HOM05D007621 ORTHO05D009631 8.1e-215 751.1 668 61.1
Hma1.2p1_1182F.1_g264810 Hydrangea macrophylla HOM05D007621 ORTHO05D009631 2.2e-212 743.0 648 61.9
FvH4_3g03980 Fragaria vesca HOM05D007621 ORTHO05D009631 2.4e-211 739.6 665 60.0
Actinidia11809 Actinidia chinensis HOM05D007621 ORTHO05D009631 3.2e-211 739.2 565 67.3
FAN11G2677 Fragaria x ananassa HOM05D007621 ORTHO05D009631 3.5e-210 735.7 658 60.3
Manes.16G020600 Manihot esculenta HOM05D007621 ORTHO05D009631 1.1e-203 714.1 665 59.8
Ciclev10014484m.g Citrus clementina HOM05D007621 ORTHO05D009631 1.8e-201 706.8 655 58.2
Glyma.15G067500 Glycine max HOM05D007621 ORTHO05D009631 1.5e-200 703.7 676 56.4
Prupe.4G036900 Prunus persica HOM05D007621 ORTHO05D009631 4.3e-200 702.2 650 59.1
Lj6g0025549 Lotus japonicus HOM05D007621 ORTHO05D009631 4.8e-199 698.7 645 57.4
VMungo0540G1980 Vigna mungo HOM05D007621 ORTHO05D009631 4.9e-196 688.7 695 53.2
FAN16G2797 Fragaria x ananassa HOM05D007621 ORTHO05D009631 1.2e-194 684.1 662 57.1
Nitab4.5_0000190g0070 Nicotiana tabacum HOM05D007621 ORTHO05D009631 1.5e-192 677.2 660 56.7
Sed0011037 Sechium edule HOM05D007621 ORTHO05D009631 1.5e-192 677.2 454 71.6
ATR0693G363 Amborella trichopoda HOM05D007621 ORTHO05D009631 2.5e-192 676.4 553 62.4
Nitab4.5_0006573g0020 Nicotiana tabacum HOM05D007621 ORTHO05D009631 4.8e-191 672.2 666 56.5
CAN.G424.15 Capsicum annuum HOM05D007621 ORTHO05D009631 8.2e-191 671.4 649 56.1
PGR042G2283 Punica granatum HOM05D007621 ORTHO05D009631 1.8e-190 670.2 605 58.2
ClCG03G005520 Citrullus lanatus HOM05D007621 ORTHO05D009631 1.3e-188 664.1 532 63.5
MD05G1325500 Malus domestica HOM05D007621 ORTHO05D009631 6.1e-186 655.2 656 56.1
MSTRG.14678 Avicennia marina HOM05D007621 ORTHO05D009631 1.9e-184 650.2 647 56.3
PGSC0003DMG400022357 Solanum tuberosum HOM05D007621 ORTHO05D009631 1.3e-183 647.5 591 58.4
Eucgr.E03798 Eucalyptus grandis HOM05D007621 ORTHO05D009631 2.2e-183 646.7 649 54.7
HPP92_005890 Vanilla planifolia HOM05D007621 ORTHO05D009631 2.8e-183 646.4 450 69.1
Peaxi162Scf00083g00022 Petunia axillaris HOM05D007621 ORTHO05D009631 5.3e-182 642.1 607 58.2
MELO3C002556.2 Cucumis melo HOM05D007621 ORTHO05D009631 1.5e-181 640.6 550 61.3
CsaV3_1G011790 Cucumis sativus L. HOM05D007621 ORTHO05D009631 5.9e-181 638.6 398 75.9
Lj1C1213T4 Lonicera japonica HOM05D007621 ORTHO05D009631 5.9e-181 638.6 661 53.9
SalBow7G3398 Salvia bowleyana HOM05D007621 ORTHO05D009631 7.7e-181 638.3 523 61.6
SalBow7G0238 Salvia bowleyana HOM05D007621 ORTHO05D009631 3.8e-180 636.0 523 61.4
Sc14g0001480 Simmondsia chinensis HOM05D007621 ORTHO05D009631 2.5e-179 633.3 698 50.7
Cc02_g12430 Coffea canephora HOM05D007621 ORTHO05D009631 2.1e-178 630.2 682 52.6
SEGI_29793 Sequoiadendron giganteum HOM05D007621 ORTHO05D009631 2.5e-176 623.2 455 64.6
Ca_00253_v3 Cicer arietinum L. HOM05D007621 ORTHO05D009631 4.3e-176 622.5 457 66.7
CDE12G0841 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 5.7e-176 622.1 660 52.1
SGA_v2.0_scaffold49G18280 Striga asiatica HOM05D007621 ORTHO05D009631 5.7e-176 622.1 561 58.1
CDE01G0329 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 4.8e-175 619.0 469 66.7
Psat1g208720 Pisum sativum HOM05D007621 ORTHO05D009631 6.3e-175 618.6 459 65.6
Sopen02g023940 Solanum pennellii HOM05D007621 ORTHO05D009631 4.1e-174 615.9 460 66.3
Solyc02g079140.2 Solanum lycopersicum HOM05D007621 ORTHO05D009631 6.9e-174 615.1 460 66.1
arahy.Tifrunner.gnm1.ann1.M1GH8V Arachis hypogaea HOM05D007621 ORTHO05D009631 9.1e-174 614.8 556 58.1
AUR62016897 Chenopodium quinoa HOM05D007621 ORTHO05D009631 3.4e-173 612.8 536 60.8
AUR62014718 Chenopodium quinoa HOM05D007621 ORTHO05D009631 1.7e-172 610.5 605 56.2
Phvul.006G192200 Phaseolus vulgaris HOM05D007621 ORTHO05D009631 6.5e-172 608.6 701 49.6
EL10Ac8g20530 Beta vulgaris HOM05D007621 ORTHO05D009631 4.2e-171 605.9 445 66.1
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 3.0e-169 599.7 670 51.0
CiPaw.09G157900 Carya illinoinensis HOM05D007621 ORTHO05D009631 4.4e-168 595.9 488 65.6
ECA248G3190 Erigeron canadensis HOM05D007621 ORTHO05D009631 4.4e-168 595.9 644 51.9
Os04g0636000 Oryza sativa ssp. japonica HOM05D007621 ORTHO05D009631 2.2e-167 593.6 418 69.1
Lsat_1_v5_gn_1_126820 Lactuca sativa HOM05D007621 ORTHO05D009631 1.0e-164 584.7 527 57.5
Zm00001eb069260 Zea mays HOM05D007621 ORTHO05D009631 1.1e-163 581.3 415 66.7
arahy.Tifrunner.gnm1.ann1.14L1JV Arachis hypogaea HOM05D007621 ORTHO05D009631 5.5e-163 578.9 573 53.9
Hund23606 Selenicereus undatus HOM05D007621 ORTHO05D009631 3.6e-162 576.2 629 53.1
HanXRQChr11g0338441 Helianthus annuus HOM05D007621 ORTHO05D009631 1.1e-158 564.7 613 51.7
CDE01G0148 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 3.8e-156 556.2 412 66.5
PGR042G3240 Punica granatum HOM05D007621 ORTHO05D009631 1.8e-153 547.4 423 64.3
Mapoly0104s0019 Marchantia polymorpha HOM05D007621 ORTHO05D009631 3.0e-153 546.6 397 66.0
Thecc.06G199600 Theobroma cacao HOM05D007621 ORTHO05D009631 3.5e-141 506.5 514 54.5
Zm00001eb081180 Zea mays HOM05D007621 ORTHO05D009631 6.1e-138 495.7 364 65.4
Aqoxy1G02733 Aquilegia oxysepala HOM05D007621 ORTHO05D009631 2.1e-122 444.1 288 74.0
Eucgr.E03700 Eucalyptus grandis HOM05D007621 ORTHO05D009631 6.6e-116 422.5 503 50.7
FAN25G1179 Fragaria x ananassa HOM05D007621 ORTHO05D009631 1.5e-115 421.4 472 54.9
CBR_g725 Chara braunii HOM05D007621 ORTHO05D009631 7.6e-112 409.1 411 49.6
Zm00001eb274720 Zea mays HOM05D007621 ORTHO05D009631 5.1e-100 369.8 255 69.8
RcHm_v2.0_Chr7g0240451 Rosa chinensis HOM05D007621 ORTHO05D009631 1.6e-90 338.2 379 49.3
Medtr2g011780 Medicago truncatula HOM05D007621 ORTHO05D009631 1.1e-89 335.5 295 59.0
Oeu050825.1 Olea europaea HOM05D007621 ORTHO05D009631 3.7e-82 310.5 425 47.1
arahy.Tifrunner.gnm1.ann1.C857YU Arachis hypogaea HOM05D007621 ORTHO05D009631 5.1e-68 263.5 280 51.1
Psat1g210360 Pisum sativum HOM05D007621 ORTHO05D009631 3.0e-60 237.7 187 62.0
Cpa.g.sc27.127 Carica papaya HOM05D007621 ORTHO05D009631 4.7e-45 187.2 331 40.8
FvH4_6g02023 Fragaria vesca HOM05D007621 ORTHO05D009631 1.1e-41 176.0 133 57.1
Glyma.13G246302 Glycine max HOM05D007621 ORTHO05D009631 5.9e-40 170.2 155 61.3
Atru.chr10.2012 Acer truncatum HOM05D007621 ORTHO05D009631 1.4e-33 149.1 133 55.6
Potri.004G034301 Populus trichocarpa HOM05D007621 ORTHO05D009631 7.2e-30 136.7 78 78.2
Cre02.g116800 Chlamydomonas reinhardtii HOM05D007621 ORTHO05D009631 1.4e-28 132.5 483 26.5
SGA_v2.0_scaffold32G13107 Striga asiatica HOM05D007621 ORTHO05D009631 3.3e-22 111.3 126 51.6
EL10Ac8g20531 Beta vulgaris HOM05D007621 ORTHO05D009631 5.0e-15 87.4 296 31.4
AagrBONN_evm.TU.Sc2ySwM_340.408 Anthoceros agrestis HOM05D007621 ORTHO05D009631 1.5e-14 85.9 87 51.7
Sabra04G0020100 Salix brachista HOM05D007621 ORTHO05D009631 3.6e-13 81.3 165 33.3
SGA_v2.0_scaffold86G26914 Striga asiatica HOM05D007621 ORTHO05D009631 5.2e-12 77.4 57 64.9
Atru.chr10.2011 Acer truncatum HOM05D007621 ORTHO05D009631 1.7e-10 72.4 45 68.9
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.9e-10 71.6 185 30.3
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 1.0e-07 63.2 174 32.8
SGA_v2.0_scaffold26G11386 Striga asiatica HOM05D007621 ORTHO05D009631 1.5e-06 59.3 58 50.0


User provided reference genes

Program Settings