Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 4.2e-209 731.1 365 100.0
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 1.2e-128 463.8 373 68.4
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.5e-121 440.3 372 65.3
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 2.0e-118 429.9 387 62.3
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.5e-113 413.7 370 63.0
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 3.0e-106 389.4 322 66.1
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.5e-89 333.2 382 53.4
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 7.9e-83 311.6 377 48.5
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.4e-82 310.8 377 53.1
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 5.1e-82 308.9 379 49.6
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.8e-80 303.1 377 49.6
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.1e-79 301.2 368 50.3
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 6.9e-79 298.5 383 48.0
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 2.6e-78 296.6 377 51.7
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.4e-76 290.8 363 51.0
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 3.2e-76 289.7 391 46.5
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 5.5e-76 288.9 386 50.5
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.2e-75 287.7 375 49.6
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 4.7e-75 285.8 374 49.5
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 3.0e-74 283.1 385 47.0
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 4.1e-71 272.7 379 45.9
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.0e-69 268.1 379 48.5
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 1.3e-69 267.7 371 47.7
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 3.8e-69 266.2 380 47.9
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.5e-68 264.2 379 48.3
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 9.4e-68 261.5 390 43.6
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.7e-67 260.0 379 47.8
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.6e-67 259.6 378 47.1
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 4.7e-67 259.2 371 48.2
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 6.7e-66 255.4 385 44.2
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.3e-64 251.1 302 49.7
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 6.3e-64 248.8 381 43.3
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.8e-63 247.3 373 45.8
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 5.3e-63 245.7 380 42.9
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 5.3e-63 245.7 377 44.3
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.5e-62 242.7 373 44.5
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.0e-61 241.5 371 45.3
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.0e-61 241.5 371 45.3
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.2e-60 236.5 371 44.7
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 4.2e-60 236.1 381 42.5
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 2.7e-59 233.4 385 43.6
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 3.0e-58 229.9 172 69.8
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.0e-58 229.6 350 47.1
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.4e-55 220.3 371 39.9
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 7.7e-54 215.3 352 44.9
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 5.0e-53 212.6 374 38.5
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.5e-52 211.1 372 38.4
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 2.5e-52 210.3 367 41.1
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.6e-51 207.6 352 42.6
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 7.5e-49 198.7 368 39.9
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.1e-47 194.9 393 36.6
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.4e-47 194.5 360 37.2
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.1e-47 193.4 367 39.0
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 7.0e-47 192.2 328 38.7
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.9e-45 186.8 374 38.5
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 1.1e-44 184.9 346 38.7
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.6e-43 181.0 362 37.0
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 2.8e-43 180.3 226 47.8
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.8e-42 177.6 275 39.6
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 4.4e-41 172.9 361 35.7
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 4.4e-41 172.9 361 35.7
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 6.4e-40 169.1 387 33.3
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 1.4e-39 167.9 372 37.1
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 1.4e-39 167.9 381 33.6
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.4e-39 167.2 273 41.4
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 9.2e-39 165.2 345 37.7
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 4.6e-38 162.9 352 37.2
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 4.6e-38 162.9 360 35.8
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 4.6e-38 162.9 381 33.1
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.0e-37 161.8 350 35.7
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.0e-37 161.8 368 35.9
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.3e-37 161.4 350 36.0
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 3.0e-37 160.2 362 34.5
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 3.9e-37 159.8 174 49.4
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 1.1e-36 158.3 362 35.1
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 1.1e-36 158.3 374 33.7
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.5e-36 157.9 268 39.9
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 7.3e-36 155.6 363 34.7
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 9.5e-36 155.2 361 37.1
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 1.6e-35 154.5 384 33.3
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.6e-35 154.5 385 34.3
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 2.1e-35 154.1 362 34.5
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 2.1e-35 154.1 397 32.7
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 2.8e-35 153.7 360 36.1
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 2.8e-35 153.7 360 36.1
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 2.8e-35 153.7 360 36.1
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 2.8e-35 153.7 354 35.6
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 2.8e-35 153.7 373 33.2
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 1.0e-34 151.8 385 33.8
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 3.1e-34 150.2 360 35.0
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 3.1e-34 150.2 379 36.1
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 1.2e-33 148.3 351 33.9
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 1.5e-33 147.9 203 45.3
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 4.4e-33 146.4 364 34.6
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 7.5e-33 145.6 359 34.3
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 7.5e-33 145.6 413 30.3
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 9.8e-33 145.2 279 39.8
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 9.8e-33 145.2 279 39.8
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.7e-32 144.4 376 34.6
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 3.7e-32 143.3 361 32.7
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 3.7e-32 143.3 153 51.0
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 4.9e-32 142.9 385 31.7
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 8.3e-32 142.1 203 44.3
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 1.4e-31 141.4 214 42.5
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 3.2e-31 140.2 366 32.5
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 4.1e-31 139.8 137 51.1
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 7.0e-31 139.0 175 45.7
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 2.0e-30 137.5 364 36.0
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 6.0e-30 136.0 347 32.6
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 6.0e-30 136.0 170 42.4
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.7e-29 134.4 350 31.4
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 3.9e-29 133.3 148 48.0
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.3e-28 130.2 294 35.4
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 5.6e-28 129.4 160 46.2
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 7.3e-28 129.0 355 33.8
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 9.5e-28 128.6 358 32.1
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 3.6e-27 126.7 358 32.4
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.1e-26 125.2 356 31.7
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.1e-26 125.2 356 31.7
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 1.8e-26 124.4 417 30.7
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 3.1e-26 123.6 147 50.3
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 5.2e-26 122.9 183 42.1
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 8.9e-26 122.1 106 56.6
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 5.4e-23 112.8 209 38.3
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 7.1e-23 112.5 374 32.1
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 3.0e-21 107.1 170 38.2
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 8.6e-21 105.5 118 44.1
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 7.3e-20 102.4 341 30.8
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 3.6e-19 100.1 109 45.9
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.4e-18 98.2 167 36.5
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 1.7e-16 91.3 288 28.1
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 8.4e-16 89.0 341 28.7
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.2e-14 85.1 361 30.2
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 1.7e-13 81.3 215 30.7
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 5.6e-12 76.3 275 30.2
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 5.6e-12 76.3 81 53.1
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 2.1e-11 74.3 99 40.4
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 6.8e-10 69.3 367 28.3
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 2.9e-08 63.9 94 35.1
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 5.4e-07 59.7 136 27.2
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 3.5e-06 57.0 67 44.8
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 4.6e-06 56.6 106 31.1


User provided reference genes

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