Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 1.8e-63 245.7 123 100.0
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 1.8e-63 245.7 123 100.0
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 1.2e-46 189.9 120 78.3
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.8e-23 112.8 130 56.2
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.5e-22 109.8 118 57.6
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.6e-22 109.0 137 53.3
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 5.0e-21 104.8 127 52.0
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 3.2e-20 102.1 125 51.2
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.2e-20 101.7 129 47.3
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.5e-20 101.3 129 47.3
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 7.2e-20 100.9 128 49.2
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.2e-20 100.9 128 49.2
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.9e-19 97.4 129 46.5
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 1.1e-17 93.6 114 53.5
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.3e-17 91.7 142 45.8
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 6.3e-16 87.8 65 72.3
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.8e-15 86.3 140 46.4
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 5.9e-14 81.3 131 42.0
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 3.8e-13 78.6 112 50.9
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.4e-12 76.6 82 58.5
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.9e-12 76.3 135 45.2
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 3.2e-12 75.5 138 44.9
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 3.2e-12 75.5 80 52.5
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 3.2e-12 75.5 83 49.4
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 4.2e-12 75.1 104 50.0
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 9.4e-12 73.9 118 44.1
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 1.2e-11 73.6 64 65.6
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.2e-11 73.6 135 44.4
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 1.6e-11 73.2 115 47.0
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.6e-11 73.2 53 73.6
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 1.6e-11 73.2 89 53.9
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.6e-11 73.2 62 67.7
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 2.1e-11 72.8 120 48.3
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 2.7e-11 72.4 130 43.8
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 3.6e-11 72.0 70 60.0
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 3.6e-11 72.0 59 67.8
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.7e-11 71.6 116 44.8
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 6.1e-11 71.2 114 45.6
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 7.9e-11 70.9 116 48.3
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 7.9e-11 70.9 80 55.0
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 7.9e-11 70.9 59 66.1
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.0e-10 70.5 95 50.5
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.0e-10 70.5 130 41.5
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 1.0e-10 70.5 67 55.2
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.8e-10 69.7 51 68.6
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 2.3e-10 69.3 123 37.4
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 2.3e-10 69.3 60 58.3
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 3.0e-10 68.9 75 56.0
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 3.0e-10 68.9 72 61.1
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 3.9e-10 68.6 46 76.1
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 3.9e-10 68.6 127 42.5
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 5.1e-10 68.2 69 62.3
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 5.1e-10 68.2 55 61.8
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 6.7e-10 67.8 116 46.6
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 6.7e-10 67.8 116 46.6
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 8.8e-10 67.4 67 59.7
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 8.8e-10 67.4 70 58.6
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 8.8e-10 67.4 60 61.7
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 1.1e-09 67.0 120 44.2
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 1.5e-09 66.6 113 46.0
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 2.0e-09 66.2 62 53.2
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 3.3e-09 65.5 55 61.8
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 4.4e-09 65.1 77 49.4
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 4.4e-09 65.1 121 45.5
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 4.4e-09 65.1 63 55.6
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.7e-09 64.7 139 41.7
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 5.7e-09 64.7 54 63.0
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 5.7e-09 64.7 117 42.7
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 7.4e-09 64.3 65 56.9
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 7.4e-09 64.3 57 57.9
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 7.4e-09 64.3 57 63.2
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 9.7e-09 63.9 53 69.8
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.3e-08 63.5 66 56.1
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.3e-08 63.5 49 65.3
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 2.2e-08 62.8 57 57.9
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 2.2e-08 62.8 56 57.1
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 2.8e-08 62.4 82 48.8
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 2.8e-08 62.4 51 60.8
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 4.8e-08 61.6 46 69.6
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 6.3e-08 61.2 43 69.8
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 6.3e-08 61.2 125 39.2
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 6.3e-08 61.2 47 61.7
Phvul.011G203450 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 8.2e-08 60.8 117 41.9
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 8.2e-08 60.8 58 60.3
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 1.1e-07 60.5 68 51.5
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 1.4e-07 60.1 50 62.0
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 1.4e-07 60.1 126 35.7
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 1.4e-07 60.1 130 38.5
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 1.4e-07 60.1 46 69.6
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 1.8e-07 59.7 73 53.4
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 2.4e-07 59.3 120 41.7
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 2.4e-07 59.3 114 42.1
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 2.4e-07 59.3 76 47.4
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 3.1e-07 58.9 51 66.7
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 3.1e-07 58.9 66 51.5
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 3.1e-07 58.9 66 51.5
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.1e-07 58.9 96 40.6
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 3.1e-07 58.9 108 42.6
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 4.1e-07 58.5 67 50.7
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 4.1e-07 58.5 87 40.2
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 4.1e-07 58.5 63 50.8
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.1e-07 58.5 43 67.4
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.3e-07 58.2 60 55.0
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.3e-07 58.2 60 55.0
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 7.0e-07 57.8 44 65.9
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 7.0e-07 57.8 44 65.9
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 7.0e-07 57.8 44 65.9
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 7.0e-07 57.8 44 65.9
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 7.0e-07 57.8 42 71.4
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 7.0e-07 57.8 112 36.6
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 9.1e-07 57.4 44 65.9
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 9.1e-07 57.4 44 65.9
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 9.1e-07 57.4 63 52.4
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 9.1e-07 57.4 60 53.3
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 9.1e-07 57.4 59 54.2
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.2e-06 57.0 51 60.8
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 1.2e-06 57.0 53 58.5
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 1.2e-06 57.0 87 47.1
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 1.2e-06 57.0 60 55.0
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.5e-06 56.6 70 48.6
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.5e-06 56.6 44 68.2
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 1.5e-06 56.6 45 62.2
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 1.5e-06 56.6 63 50.8
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.5e-06 56.6 53 60.4
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 2.0e-06 56.2 52 63.5
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 2.6e-06 55.8 43 65.1
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 2.6e-06 55.8 43 65.1
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 2.6e-06 55.8 43 65.1
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 2.6e-06 55.8 64 46.9
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 2.6e-06 55.8 52 59.6
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 2.6e-06 55.8 66 50.0
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.6e-06 55.8 43 67.4
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 3.4e-06 55.5 66 53.0
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 3.4e-06 55.5 54 59.3
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 3.4e-06 55.5 58 55.2
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 3.4e-06 55.5 45 60.0
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 4.5e-06 55.1 45 62.2
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 4.5e-06 55.1 66 53.0
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 4.5e-06 55.1 51 56.9
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 4.5e-06 55.1 43 65.1
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 4.5e-06 55.1 49 55.1
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 5.9e-06 54.7 55 52.7
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 7.7e-06 54.3 43 62.8
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 7.7e-06 54.3 43 67.4
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 7.7e-06 54.3 62 46.8


User provided reference genes

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