Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 2.1e-61 238.8 120 100.0
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 8.8e-47 190.3 120 78.3
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 8.8e-47 190.3 120 78.3
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 1.2e-16 90.1 118 47.5
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.1e-16 89.4 120 50.0
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 4.7e-16 88.2 116 47.4
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 8.0e-16 87.4 106 52.8
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.0e-15 85.5 130 46.9
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 4.0e-15 85.1 121 43.8
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.0e-15 85.1 121 43.8
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.8e-15 84.0 125 40.8
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.2e-14 83.6 125 41.6
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.2e-14 83.6 125 41.6
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.7e-13 78.6 131 43.5
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 2.4e-12 75.9 130 46.2
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.5e-11 71.6 54 68.5
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 4.5e-11 71.6 93 47.3
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 7.7e-11 70.9 110 43.6
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 3.8e-10 68.6 85 47.1
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 5.0e-10 68.2 112 45.5
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 6.6e-10 67.8 60 63.3
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 8.6e-10 67.4 135 43.0
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 1.1e-09 67.0 86 47.7
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 2.5e-09 65.9 107 42.1
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 4.2e-09 65.1 82 50.0
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 7.2e-09 64.3 117 41.9
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 7.2e-09 64.3 57 57.9
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 9.5e-09 63.9 88 48.9
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.2e-08 63.5 73 53.4
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 1.2e-08 63.5 121 44.6
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 1.2e-08 63.5 116 45.7
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 2.1e-08 62.8 56 62.5
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 2.8e-08 62.4 41 78.0
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 2.8e-08 62.4 41 78.0
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 3.6e-08 62.0 92 45.7
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.6e-08 62.0 127 40.2
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 3.6e-08 62.0 88 44.3
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 4.7e-08 61.6 120 40.8
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 4.7e-08 61.6 125 40.8
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 6.1e-08 61.2 117 40.2
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 6.1e-08 61.2 57 56.1
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 6.1e-08 61.2 109 45.0
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 6.1e-08 61.2 66 47.0
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 1.0e-07 60.5 50 62.0
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.0e-07 60.5 108 42.6
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.0e-07 60.5 108 42.6
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 1.4e-07 60.1 95 38.9
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 1.4e-07 60.1 88 43.2
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 1.8e-07 59.7 72 47.2
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 1.8e-07 59.7 115 41.7
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.8e-07 59.7 42 66.7
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 2.3e-07 59.3 64 50.0
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 4.0e-07 58.5 48 66.7
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.0e-07 58.5 134 36.6
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 5.2e-07 58.2 53 52.8
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 5.2e-07 58.2 53 52.8
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 5.2e-07 58.2 58 56.9
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 5.2e-07 58.2 112 39.3
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 5.2e-07 58.2 62 56.5
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 6.8e-07 57.8 57 50.9
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 8.9e-07 57.4 56 53.6
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 8.9e-07 57.4 131 38.2
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 1.2e-06 57.0 101 43.6
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 1.2e-06 57.0 52 57.7
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 1.2e-06 57.0 58 56.9
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 1.2e-06 57.0 104 43.3
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 1.5e-06 56.6 80 43.8
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.5e-06 56.6 106 40.6
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 1.5e-06 56.6 66 59.1
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.5e-06 56.6 109 39.4
Phvul.011G203450 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.5e-06 56.6 109 40.4
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 2.0e-06 56.2 111 42.3
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 2.0e-06 56.2 78 47.4
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 2.6e-06 55.8 54 63.0
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 3.4e-06 55.5 66 50.0
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 3.4e-06 55.5 53 58.5
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 3.4e-06 55.5 51 56.9
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 3.4e-06 55.5 62 53.2
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 4.4e-06 55.1 60 55.0
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 5.7e-06 54.7 108 38.0
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 5.7e-06 54.7 110 40.0
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 7.5e-06 54.3 53 60.4
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 9.8e-06 53.9 47 61.7


User provided reference genes

Program Settings