Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p017594 Quercus lobata HOM05D006338 ORTHO05D007946 7.3e-69 263.8 141 100.0
QL04p017585 Quercus lobata HOM05D006338 ORTHO05D007946 3.4e-42 175.3 104 93.3
CiPaw.13G014600 Carya illinoinensis HOM05D006338 ORTHO05D007946 2.6e-34 149.1 104 75.0
Potri.001G028300 Populus trichocarpa HOM05D006338 ORTHO05D007946 3.8e-33 145.2 104 75.0
PGR031G0010 Punica granatum HOM05D006338 ORTHO05D007946 3.8e-33 145.2 134 61.9
Potri.003G195400 Populus trichocarpa HOM05D006338 ORTHO05D007946 5.0e-33 144.8 104 76.9
Ciclev10021235m.g Citrus clementina HOM05D006338 ORTHO05D007946 8.5e-33 144.1 134 61.9
Sabra01G0020600 Salix brachista HOM05D006338 ORTHO05D007946 4.2e-32 141.7 104 75.0
CiPaw.14G008300 Carya illinoinensis HOM05D006338 ORTHO05D007946 5.5e-32 141.4 104 72.1
Actinidia06233 Actinidia chinensis HOM05D006338 ORTHO05D007946 7.2e-32 141.0 105 75.2
Eucgr.G03226 Eucalyptus grandis HOM05D006338 ORTHO05D007946 4.6e-31 138.3 134 59.0
Manes.11G006100 Manihot esculenta HOM05D006338 ORTHO05D007946 4.6e-31 138.3 101 74.3
Sabra03G0145800 Salix brachista HOM05D006338 ORTHO05D007946 4.6e-31 138.3 104 74.0
CSS0012434 Camellia sinensis var. sinensis HOM05D006338 ORTHO05D007946 7.9e-31 137.5 103 72.8
CSS0026304 Camellia sinensis var. sinensis HOM05D006338 ORTHO05D007946 7.9e-31 137.5 103 72.8
Cfa010924 Carpinus fangiana HOM05D006338 ORTHO05D007946 7.9e-31 137.5 104 72.1
Haze_03018 Corylus avellana HOM05D006338 ORTHO05D007946 7.9e-31 137.5 104 72.1
Haze_03025 Corylus avellana HOM05D006338 ORTHO05D007946 7.9e-31 137.5 104 72.1
Actinidia10154 Actinidia chinensis HOM05D006338 ORTHO05D007946 1.0e-30 137.1 105 74.3
Cpa.g.c43157 Carica papaya HOM05D006338 ORTHO05D007946 1.8e-30 136.3 101 72.3
Hma1.2p1_0837F.1_g226010 Hydrangea macrophylla HOM05D006338 ORTHO05D007946 1.8e-30 136.3 105 71.4
Hma1.2p1_1202F.1_g266875 Hydrangea macrophylla HOM05D006338 ORTHO05D007946 1.8e-30 136.3 105 71.4
COL.COLO4_20675 Corchorus olitorius HOM05D006338 ORTHO05D007946 3.0e-30 135.6 115 67.0
Ca_23967_v3 Cicer arietinum L. HOM05D006338 ORTHO05D007946 3.9e-30 135.2 139 55.4
Lj3g0017268 Lotus japonicus HOM05D006338 ORTHO05D007946 3.9e-30 135.2 104 66.3
TWI38G1861 Tripterygium wilfordii HOM05D006338 ORTHO05D007946 6.7e-30 134.4 105 69.5
Lj8A90T48 Lonicera japonica HOM05D006338 ORTHO05D007946 8.7e-30 134.0 101 74.3
VMungo1127G0668 Vigna mungo HOM05D006338 ORTHO05D007946 8.7e-30 134.0 138 55.1
MELO3C011394.2 Cucumis melo HOM05D006338 ORTHO05D007946 1.9e-29 132.9 104 70.2
Lalb_Chr19g0133081 Lupinus albus HOM05D006338 ORTHO05D007946 1.9e-29 132.9 139 57.6
Dinv44690 Davidia involucrata HOM05D006338 ORTHO05D007946 2.5e-29 132.5 105 70.5
Phvul.L001620 Phaseolus vulgaris HOM05D006338 ORTHO05D007946 2.5e-29 132.5 138 55.1
Prupe.2G038900 Prunus persica HOM05D006338 ORTHO05D007946 2.5e-29 132.5 139 57.6
Dinv32021 Davidia involucrata HOM05D006338 ORTHO05D007946 4.3e-29 131.7 104 69.2
Atru.chr12.1255 Acer truncatum HOM05D006338 ORTHO05D007946 5.7e-29 131.3 101 69.3
Duzib114G0257 Durio zibethinus HOM05D006338 ORTHO05D007946 5.7e-29 131.3 115 65.2
Gohir.A05G282300 Gossypium hirsutum HOM05D006338 ORTHO05D007946 5.7e-29 131.3 102 70.6
Gorai.009G298000 Gossypium raimondii HOM05D006338 ORTHO05D007946 5.7e-29 131.3 97 73.2
ClCG08G010670 Citrullus lanatus HOM05D006338 ORTHO05D007946 7.4e-29 131.0 104 69.2
Gohir.D05G283500 Gossypium hirsutum HOM05D006338 ORTHO05D007946 7.4e-29 131.0 97 73.2
Nitab4.5_0003481g0060 Nicotiana tabacum HOM05D006338 ORTHO05D007946 7.4e-29 131.0 105 69.5
Thecc.10G151000 Theobroma cacao HOM05D006338 ORTHO05D007946 1.3e-28 130.2 115 64.3
BolC5t29407H Brassica oleracea HOM05D006338 ORTHO05D007946 2.8e-28 129.0 97 71.1
Psat4g193800 Pisum sativum HOM05D006338 ORTHO05D007946 2.8e-28 129.0 138 52.9
C05p06440 Brassica napus HOM05D006338 ORTHO05D007946 3.7e-28 128.6 97 71.1
C05p06470 Brassica napus HOM05D006338 ORTHO05D007946 3.7e-28 128.6 97 71.1
BolC5t29405H Brassica oleracea HOM05D006338 ORTHO05D007946 3.7e-28 128.6 97 71.1
CSS0033972 Camellia sinensis var. sinensis HOM05D006338 ORTHO05D007946 4.8e-28 128.3 101 72.3
Nitab4.5_0005808g0050 Nicotiana tabacum HOM05D006338 ORTHO05D007946 4.8e-28 128.3 105 67.6
Sed0013519 Sechium edule HOM05D006338 ORTHO05D007946 4.8e-28 128.3 101 71.3
PGSC0003DMG400040483 Solanum tuberosum HOM05D006338 ORTHO05D007946 4.8e-28 128.3 105 68.6
Duzib128G1584 Durio zibethinus HOM05D006338 ORTHO05D007946 6.3e-28 127.9 115 65.2
FvH4_7g03360 Fragaria vesca HOM05D006338 ORTHO05D007946 6.3e-28 127.9 134 57.5
FAN06G4797 Fragaria x ananassa HOM05D006338 ORTHO05D007946 6.3e-28 127.9 134 57.5
FAN10G1196 Fragaria x ananassa HOM05D006338 ORTHO05D007946 6.3e-28 127.9 134 57.5
Rhsim07G0067600 Rhododendron simsii HOM05D006338 ORTHO05D007946 6.3e-28 127.9 105 68.6
FAN03G0755 Fragaria x ananassa HOM05D006338 ORTHO05D007946 8.2e-28 127.5 134 57.5
HanXRQChr04g0112891 Helianthus annuus HOM05D006338 ORTHO05D007946 8.2e-28 127.5 105 67.6
Lsat_1_v5_gn_7_31600 Lactuca sativa HOM05D006338 ORTHO05D007946 8.2e-28 127.5 105 68.6
A06p05340 Brassica napus HOM05D006338 ORTHO05D007946 1.1e-27 127.1 97 69.1
BraA06t23743Z Brassica rapa HOM05D006338 ORTHO05D007946 1.1e-27 127.1 97 69.1
MD07G1049200 Malus domestica HOM05D006338 ORTHO05D007946 1.1e-27 127.1 134 56.0
CARHR008200 Cardamine hirsuta HOM05D006338 ORTHO05D007946 1.4e-27 126.7 97 69.1
Lalb_Chr03g0032071 Lupinus albus HOM05D006338 ORTHO05D007946 1.8e-27 126.3 104 66.3
RcHm_v2.0_Chr1g0325681 Rosa chinensis HOM05D006338 ORTHO05D007946 1.8e-27 126.3 134 56.7
CAN.G1045.21 Capsicum annuum HOM05D006338 ORTHO05D007946 2.4e-27 125.9 105 65.7
Solyc01g096460.2 Solanum lycopersicum HOM05D006338 ORTHO05D007946 2.4e-27 125.9 105 66.7
Sopen01g040190 Solanum pennellii HOM05D006338 ORTHO05D007946 2.4e-27 125.9 105 66.7
THA.LOC104809822 Tarenaya hassleriana HOM05D006338 ORTHO05D007946 3.1e-27 125.6 97 69.1
AT1G08315 Arabidopsis thaliana HOM05D006338 ORTHO05D007946 4.1e-27 125.2 97 69.1
Gohir.D10G193200 Gossypium hirsutum HOM05D006338 ORTHO05D007946 5.3e-27 124.8 137 54.7
Gorai.011G216000 Gossypium raimondii HOM05D006338 ORTHO05D007946 5.3e-27 124.8 137 54.7
Sc10g0004450 Simmondsia chinensis HOM05D006338 ORTHO05D007946 5.3e-27 124.8 101 66.3
Aa31LG1G6220 Aethionema arabicum HOM05D006338 ORTHO05D007946 6.9e-27 124.4 97 70.1
Carub.0001s0767 Capsella rubella HOM05D006338 ORTHO05D007946 9.1e-27 124.0 97 68.0
Thhalv10010031m.g Eutrema salsugineum HOM05D006338 ORTHO05D007946 1.2e-26 123.6 97 68.0
Sp1g06950 Schrenkiella parvula HOM05D006338 ORTHO05D007946 2.6e-26 122.5 97 68.0
CsaV3_6G035860 Cucumis sativus L. HOM05D006338 ORTHO05D007946 3.4e-26 122.1 101 67.3
TAR636G1296 Trochodendron aralioides HOM05D006338 ORTHO05D007946 3.4e-26 122.1 98 66.3
Nn7g36735 Nelumbo nucifera HOM05D006338 ORTHO05D007946 4.5e-26 121.7 98 65.3
Medtr8g039560 Medicago truncatula HOM05D006338 ORTHO05D007946 5.9e-26 121.3 138 50.0
TAR633G1700 Trochodendron aralioides HOM05D006338 ORTHO05D007946 7.7e-26 120.9 104 63.5
vmacro13757 Vaccinium macrocarpon HOM05D006338 ORTHO05D007946 7.7e-26 120.9 137 53.3
GSVIVG01036669001 Vitis vinifera HOM05D006338 ORTHO05D007946 7.7e-26 120.9 104 66.3
Glyma.15G234200 Glycine max HOM05D006338 ORTHO05D007946 1.0e-25 120.6 138 51.4
AL1G18730 Arabidopsis lyrata HOM05D006338 ORTHO05D007946 2.2e-25 119.4 93 68.8
PSO339G3787 Papaver somniferum HOM05D006338 ORTHO05D007946 2.2e-25 119.4 98 64.3
PSO384G1336 Papaver somniferum HOM05D006338 ORTHO05D007946 2.2e-25 119.4 98 64.3
TWI63G1844 Tripterygium wilfordii HOM05D006338 ORTHO05D007946 2.2e-25 119.4 101 67.3
Migut.B01237 Erythranthe guttata HOM05D006338 ORTHO05D007946 3.8e-25 118.6 106 66.0
Aqoxy1G00369 Aquilegia oxysepala HOM05D006338 ORTHO05D007946 8.5e-25 117.5 141 48.2
MD02G1283700 Malus domestica HOM05D006338 ORTHO05D007946 1.1e-24 117.1 134 53.0
Glyma.13G195900 Glycine max HOM05D006338 ORTHO05D007946 9.4e-24 114.0 97 59.8
MSTRG.20508 Avicennia marina HOM05D006338 ORTHO05D007946 1.2e-23 113.6 103 62.1
AUR62026882 Chenopodium quinoa HOM05D006338 ORTHO05D007946 7.9e-23 110.9 108 57.4
Cc02_g29680 Coffea canephora HOM05D006338 ORTHO05D007946 6.7e-22 107.8 110 60.0
unitig_749.g14336 Utricularia gibba HOM05D006338 ORTHO05D007946 5.7e-21 104.8 139 48.2
SalBow5G1402 Salvia bowleyana HOM05D006338 ORTHO05D007946 7.4e-21 104.4 103 59.2
MBI13_g38612_MAGBIO Magnolia biondii HOM05D006338 ORTHO05D007946 8.2e-20 100.9 141 45.4
DCAR_003626 Daucus carota HOM05D006338 ORTHO05D007946 1.8e-19 99.8 92 60.9
unitig_8.g3782 Utricularia gibba HOM05D006338 ORTHO05D007946 9.1e-19 97.4 102 56.9
arahy.Tifrunner.gnm1.ann1.XVKA12 Arachis hypogaea HOM05D006338 ORTHO05D007946 2.6e-18 95.9 104 50.0
SGA_v2.0_scaffold124G33609 Striga asiatica HOM05D006338 ORTHO05D007946 4.5e-18 95.1 100 58.0
Ah.12g062770 Amaranthus hybridus HOM05D006338 ORTHO05D007946 7.7e-18 94.4 108 50.0
VMungo1080G1396 Vigna mungo HOM05D006338 ORTHO05D007946 8.5e-17 90.9 104 51.9
Glyma.04G135700 Glycine max HOM05D006338 ORTHO05D007946 2.5e-16 89.4 104 50.0
Phvul.005G025800 Phaseolus vulgaris HOM05D006338 ORTHO05D007946 3.2e-16 89.0 104 51.0
ECA248G3412 Erigeron canadensis HOM05D006338 ORTHO05D007946 2.1e-15 86.3 72 66.7
Ca_05571_v3 Cicer arietinum L. HOM05D006338 ORTHO05D007946 5.2e-14 81.6 138 39.1
ATR0745G013 Amborella trichopoda HOM05D006338 ORTHO05D007946 2.6e-13 79.3 108 48.1
SEGI_33417 Sequoiadendron giganteum HOM05D006338 ORTHO05D007946 2.2e-12 76.3 100 49.0
HPP92_006729 Vanilla planifolia HOM05D006338 ORTHO05D007946 1.8e-11 73.2 106 48.1
Lalb_Chr18g0054801 Lupinus albus HOM05D000215 ORTHO05D002239 3.2e-08 62.4 100 40.0
Lalb_Chr21g0313591 Lupinus albus HOM05D000215 ORTHO05D002239 3.2e-08 62.4 100 40.0
SHI21953 Sapria himalayana HOM05D000215 ORTHO05D002239 7.2e-08 61.2 100 40.0
SGA_v2.0_scaffold85G26647 Striga asiatica HOM05D000215 ORTHO05D002239 7.2e-08 61.2 101 40.6
Glyma.15G086200 Glycine max HOM05D000215 ORTHO05D002239 1.6e-07 60.1 144 32.6
Os01g0956075 Oryza sativa ssp. japonica HOM05D006338 ORTHO05D007946 1.6e-07 60.1 138 38.4
Phvul.006G171900 Phaseolus vulgaris HOM05D000215 ORTHO05D002239 2.1e-07 59.7 100 39.0
Ca_00476_v3 Cicer arietinum L. HOM05D000215 ORTHO05D002239 2.7e-07 59.3 100 38.0
Eucgr.D00434 Eucalyptus grandis HOM05D000215 ORTHO05D002239 2.7e-07 59.3 100 40.0
VMungo0540G1989 Vigna mungo HOM05D000215 ORTHO05D002239 2.7e-07 59.3 100 39.0
Lalb_Chr15g0086361 Lupinus albus HOM05D000215 ORTHO05D002239 3.6e-07 58.9 100 37.0
Potri.004G061800 Populus trichocarpa HOM05D000215 ORTHO05D002239 4.7e-07 58.5 100 37.0
Zm00001eb140580 Zea mays HOM05D006338 ORTHO05D007946 6.1e-07 58.2 101 43.6
Sabra04G0041000 Salix brachista HOM05D000215 ORTHO05D002239 8.0e-07 57.8 100 37.0
Dinv24588 Davidia involucrata HOM05D000215 ORTHO05D002239 1.0e-06 57.4 100 38.0
Glyma.13G225900 Glycine max HOM05D000215 ORTHO05D002239 1.0e-06 57.4 100 38.0
SalBow5G2526 Salvia bowleyana HOM05D000215 ORTHO05D002239 1.0e-06 57.4 102 41.2
Lalb_Chr07g0186221 Lupinus albus HOM05D000215 ORTHO05D002239 1.4e-06 57.0 100 38.0
vmacro10024 Vaccinium macrocarpon HOM05D000215 ORTHO05D008904 1.4e-06 57.0 100 41.0
Manes.17G060000 Manihot esculenta HOM05D000215 ORTHO05D002239 1.8e-06 56.6 99 36.4
CSS0030349 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002239 2.3e-06 56.2 101 38.6
Rhsim09G0179200 Rhododendron simsii HOM05D000215 ORTHO05D008904 2.3e-06 56.2 96 37.5
AUR62039488 Chenopodium quinoa HOM05D000215 ORTHO05D002239 3.0e-06 55.8 94 39.4
Dinv25323 Davidia involucrata HOM05D000215 ORTHO05D002239 3.0e-06 55.8 101 39.6
Medtr2g018010 Medicago truncatula HOM05D000215 ORTHO05D002239 3.0e-06 55.8 100 36.0
PGR004G2249 Punica granatum HOM05D000215 ORTHO05D002239 3.0e-06 55.8 105 38.1
MSTRG.5513 Avicennia marina HOM05D000215 ORTHO05D002239 4.0e-06 55.5 101 38.6
DCAR_007929 Daucus carota HOM05D000215 ORTHO05D002239 4.0e-06 55.5 100 36.0
Dinv11383 Davidia involucrata HOM05D000215 ORTHO05D002239 4.0e-06 55.5 101 42.6
Duzib160G0259 Durio zibethinus HOM05D000215 ORTHO05D002239 4.0e-06 55.5 99 37.4
Gohir.A09G075000 Gossypium hirsutum HOM05D000215 ORTHO05D002239 4.0e-06 55.5 100 37.0
Potri.011G071400 Populus trichocarpa HOM05D000215 ORTHO05D002239 4.0e-06 55.5 100 37.0
ATR0736G209 Amborella trichopoda HOM05D001760 ORTHO05D001691 5.2e-06 55.1 73 43.8
AUR62041812 Chenopodium quinoa HOM05D000215 ORTHO05D002239 5.2e-06 55.1 94 39.4
Psat1g194360 Pisum sativum HOM05D000215 ORTHO05D002239 5.2e-06 55.1 100 35.0
PGR042G3463 Punica granatum HOM05D000215 ORTHO05D002239 6.7e-06 54.7 100 37.0
Lj6g0009569 Lotus japonicus HOM05D000215 ORTHO05D002239 8.8e-06 54.3 100 36.0
unitig_27.g24883 Utricularia gibba HOM05D000215 ORTHO05D002239 8.8e-06 54.3 107 39.3


User provided reference genes

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