Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p015298 Quercus lobata HOM05D007749 ORTHO05D009809 2.0e-55 218.8 107 100.0
QL02p093050 Quercus lobata HOM05D000759 ORTHO05D000574 1.7e-49 199.1 98 99.0
QL10p048728 Quercus lobata HOM05D007749 ORTHO05D009809 8.4e-33 143.7 89 82.0
CANSAT56G0324 Cannabis sativa HOM05D007749 ORTHO05D009809 9.6e-21 103.6 94 56.4
CANSAT56G2176 Cannabis sativa HOM05D007749 ORTHO05D009809 9.6e-21 103.6 94 56.4
THA.LOC104803661 Tarenaya hassleriana HOM05D007749 ORTHO05D009809 9.6e-21 103.6 93 58.1
Rhsim09G0028100 Rhododendron simsii HOM05D007749 ORTHO05D009809 2.8e-20 102.1 93 58.1
ClCG08G004660 Citrullus lanatus HOM05D007749 ORTHO05D009809 6.2e-20 100.9 95 57.9
CsaV3_6G003910 Cucumis sativus L. HOM05D007749 ORTHO05D009809 6.2e-20 100.9 89 59.6
TAR633G0982 Trochodendron aralioides HOM05D007749 ORTHO05D009809 6.2e-20 100.9 89 59.6
Sed0008576 Sechium edule HOM05D007749 ORTHO05D009809 1.1e-19 100.1 89 59.6
MD04G1040200 Malus domestica HOM05D007749 ORTHO05D009809 1.4e-19 99.8 93 54.8
Aa31LG1G25110 Aethionema arabicum HOM05D007749 ORTHO05D009809 2.4e-19 99.0 96 55.2
Manes.11G120200 Manihot esculenta HOM05D007749 ORTHO05D009809 4.0e-19 98.2 93 51.6
CiPaw.02G055000 Carya illinoinensis HOM05D007749 ORTHO05D009809 5.3e-19 97.8 90 57.8
MELO3C011656.2 Cucumis melo HOM05D007749 ORTHO05D009809 5.3e-19 97.8 89 57.3
Oeu037445.1 Olea europaea HOM05D007749 ORTHO05D009809 6.9e-19 97.4 93 49.5
AUR62005121 Chenopodium quinoa HOM05D007749 ORTHO05D009809 1.2e-18 96.7 89 57.3
Sp4g25410 Schrenkiella parvula HOM05D007749 ORTHO05D009809 1.2e-18 96.7 98 52.0
AUR62000855 Chenopodium quinoa HOM05D007749 ORTHO05D009809 1.5e-18 96.3 89 57.3
Dinv44193 Davidia involucrata HOM05D006659 ORTHO05D008372 1.5e-18 96.3 89 56.2
BcaB06g29301 Brassica carinata HOM05D007749 ORTHO05D009809 2.0e-18 95.9 89 55.1
C04p70340 Brassica napus HOM05D007749 ORTHO05D009809 2.0e-18 95.9 89 55.1
BolC4t28537H Brassica oleracea HOM05D007749 ORTHO05D009809 2.0e-18 95.9 89 55.1
COL.COLO4_07660 Corchorus olitorius HOM05D007749 ORTHO05D009809 2.0e-18 95.9 93 51.6
Thhalv10001764m.g Eutrema salsugineum HOM05D007749 ORTHO05D009809 3.4e-18 95.1 96 51.0
BcaC02g07190 Brassica carinata HOM05D007749 ORTHO05D009809 4.5e-18 94.7 89 53.9
A04p32650 Brassica napus HOM05D007749 ORTHO05D009809 4.5e-18 94.7 89 53.9
BraA04t18728Z Brassica rapa HOM05D007749 ORTHO05D009809 4.5e-18 94.7 89 53.9
FvH4_4g10741 Fragaria vesca HOM05D007749 ORTHO05D009809 4.5e-18 94.7 89 56.2
TWI15G0305 Tripterygium wilfordii HOM05D007749 ORTHO05D009809 4.5e-18 94.7 95 50.5
TWI15G0741 Tripterygium wilfordii HOM05D007749 ORTHO05D009809 4.5e-18 94.7 95 50.5
Eucgr.H00373 Eucalyptus grandis HOM05D007749 ORTHO05D009809 7.6e-18 94.0 90 58.9
PGR142G0736 Punica granatum HOM05D007749 ORTHO05D009809 7.6e-18 94.0 93 58.1
Thecc.04G180100 Theobroma cacao HOM05D007749 ORTHO05D009809 7.6e-18 94.0 89 50.6
CARHR138400 Cardamine hirsuta HOM05D007749 ORTHO05D009809 9.9e-18 93.6 89 53.9
Gohir.D10G129800 Gossypium hirsutum HOM05D007749 ORTHO05D009809 9.9e-18 93.6 89 51.7
Gorai.011G143100 Gossypium raimondii HOM05D007749 ORTHO05D009809 1.7e-17 92.8 89 50.6
Gohir.A10G136900 Gossypium hirsutum HOM05D007749 ORTHO05D009809 2.9e-17 92.0 89 50.6
CDE04G2919 Ceratophyllum demersum HOM05D007749 ORTHO05D009809 4.9e-17 91.3 91 48.4
Sabra07G0104500 Salix brachista HOM05D007749 ORTHO05D009809 4.9e-17 91.3 95 54.7
AT2G43310 Arabidopsis thaliana HOM05D007749 ORTHO05D009809 6.4e-17 90.9 89 52.8
Ca_01260_v3 Cicer arietinum L. HOM05D007749 ORTHO05D009809 1.4e-16 89.7 87 52.9
Lsat_1_v5_gn_5_23460 Lactuca sativa HOM05D007749 ORTHO05D009809 1.4e-16 89.7 89 48.3
Lalb_Chr14g0372461 Lupinus albus HOM05D007749 ORTHO05D009809 1.4e-16 89.7 89 53.9
GSVIVG01010752001 Vitis vinifera HOM05D007749 ORTHO05D009809 1.4e-16 89.7 81 53.1
Atru.chr3.1496 Acer truncatum HOM05D007749 ORTHO05D009809 1.9e-16 89.4 103 47.6
CDE07G1555 Ceratophyllum demersum HOM05D007749 ORTHO05D009809 2.4e-16 89.0 91 47.3
Sopen08g003040 Solanum pennellii HOM05D007749 ORTHO05D009809 2.4e-16 89.0 89 50.6
SGA_v2.0_scaffold52G19242 Striga asiatica HOM05D007749 ORTHO05D009809 2.4e-16 89.0 89 50.6
Duzib151G1147 Durio zibethinus HOM05D007749 ORTHO05D009809 3.2e-16 88.6 89 49.4
SalBow7G2644 Salvia bowleyana HOM05D007749 ORTHO05D009809 3.2e-16 88.6 93 46.2
Lj3g0008958 Lotus japonicus HOM05D007749 ORTHO05D009809 4.2e-16 88.2 87 52.9
Carub.0004s2577 Capsella rubella HOM05D007749 ORTHO05D009809 5.5e-16 87.8 89 51.7
Migut.B01511 Erythranthe guttata HOM05D007749 ORTHO05D009809 5.5e-16 87.8 93 45.2
AL4G41990 Arabidopsis lyrata HOM05D007749 ORTHO05D009809 7.1e-16 87.4 89 50.6
Psat1g007040 Pisum sativum HOM05D007749 ORTHO05D009809 7.1e-16 87.4 89 51.7
Prupe.1G193800 Prunus persica HOM05D007749 ORTHO05D009809 7.1e-16 87.4 91 50.5
PGSC0003DMG400020496 Solanum tuberosum HOM05D007749 ORTHO05D009809 7.1e-16 87.4 89 50.6
PGSC0003DMG400020513 Solanum tuberosum HOM05D007749 ORTHO05D009809 7.1e-16 87.4 89 50.6
CAN.G845.29 Capsicum annuum HOM05D007749 ORTHO05D009809 1.6e-15 86.3 89 50.6
Potri.017G030200 Populus trichocarpa HOM05D007749 ORTHO05D009809 2.7e-15 85.5 97 52.6
Glyma.13G344000 Glycine max HOM05D007749 ORTHO05D009809 6.0e-15 84.3 87 49.4
unitig_61.g26426 Utricularia gibba HOM05D007749 ORTHO05D009809 6.0e-15 84.3 91 45.1
Ciclev10022681m.g Citrus clementina HOM05D007749 ORTHO05D009809 7.9e-15 84.0 107 45.8
DCAR_008501 Daucus carota HOM05D007749 ORTHO05D009809 7.9e-15 84.0 89 49.4
Medtr2g098870 Medicago truncatula HOM05D007749 ORTHO05D009809 7.9e-15 84.0 89 50.6
MD07G1010900 Malus domestica HOM05D007749 ORTHO05D009809 1.8e-14 82.8 77 57.1
ECA246G4014 Erigeron canadensis HOM05D007749 ORTHO05D009809 3.9e-14 81.6 92 45.7
Phvul.005G152700 Phaseolus vulgaris HOM05D007749 ORTHO05D009809 5.1e-14 81.3 85 51.8
Potri.007G128100 Populus trichocarpa HOM05D007749 ORTHO05D009809 5.1e-14 81.3 97 52.6
Nitab4.5_0005487g0020 Nicotiana tabacum HOM05D002689 ORTHO05D003129 8.7e-14 80.5 96 43.8
VMungo1080G1081 Vigna mungo HOM05D007749 ORTHO05D009809 8.7e-14 80.5 85 51.8
Cc00_g14450 Coffea canephora HOM05D007749 ORTHO05D009809 1.1e-13 80.1 89 46.1
Aqoxy7G01786 Aquilegia oxysepala HOM05D007749 ORTHO05D009809 2.5e-13 79.0 90 46.7
Aqoxy7G01782 Aquilegia oxysepala HOM05D007749 ORTHO05D009809 3.3e-13 78.6 90 46.7
HanXRQChr02g0051151 Helianthus annuus HOM05D007749 ORTHO05D009809 5.6e-13 77.8 89 42.7
Sc25g0002390 Simmondsia chinensis HOM05D007749 ORTHO05D009809 5.6e-13 77.8 64 60.9
MD07G1093600 Malus domestica HOM05D007749 ORTHO05D009809 2.8e-12 75.5 73 53.4
Nitab4.5_0010461g0010 Nicotiana tabacum HOM05D002689 ORTHO05D003129 2.8e-12 75.5 77 48.1
Glyma.15G030300 Glycine max HOM05D007749 ORTHO05D009809 6.2e-12 74.3 81 48.1
Prupe.1G192700 Prunus persica HOM05D007749 ORTHO05D009809 2.4e-11 72.4 77 53.2
ATR0824G043 Amborella trichopoda HOM05D007749 ORTHO05D009809 6.9e-11 70.9 84 42.9
BcaB06g29300 Brassica carinata HOM05D007749 ORTHO05D009809 9.0e-11 70.5 64 54.7
HPP92_012796 Vanilla planifolia HOM05D007749 ORTHO05D009809 2.6e-10 68.9 93 47.3
Sc04g0006060 Simmondsia chinensis HOM05D007749 ORTHO05D009809 1.0e-09 67.0 69 50.7


User provided reference genes

Program Settings