Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p014432 Quercus lobata HOM05D003760 ORTHO05D004672 2.6e-62 241.9 121 100.0
QL04p014453 Quercus lobata HOM05D003760 ORTHO05D004672 1.2e-48 196.4 146 74.7
QL04p014818 Quercus lobata HOM05D003760 ORTHO05D004672 1.2e-48 196.4 146 74.7
CiPaw.13G012300 Carya illinoinensis HOM05D003760 ORTHO05D004672 6.8e-47 190.7 144 72.2
Prupe.2G032300 Prunus persica HOM05D003760 ORTHO05D004672 3.4e-46 188.3 146 71.9
FvH4_7g02780 Fragaria vesca HOM05D003760 ORTHO05D004672 2.2e-45 185.7 146 71.2
FAN03G0077 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.2e-45 185.7 146 71.2
FAN06G0531 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.2e-45 185.7 146 71.2
Haze_03069 Corylus avellana HOM05D003760 ORTHO05D004672 2.8e-45 185.3 146 71.2
Cfa010888 Carpinus fangiana HOM05D003760 ORTHO05D004672 3.7e-45 184.9 141 72.3
FAN10G4281 Fragaria x ananassa HOM05D003760 ORTHO05D004672 4.8e-45 184.5 146 70.5
RcHm_v2.0_Chr1g0322021 Rosa chinensis HOM05D003760 ORTHO05D004672 4.8e-45 184.5 146 70.5
Atru.chr12.1379 Acer truncatum HOM05D003760 ORTHO05D004672 8.3e-45 183.7 146 68.5
Eucgr.G03244 Eucalyptus grandis HOM05D003760 ORTHO05D004672 1.1e-44 183.3 145 71.0
MD02G1290200 Malus domestica HOM05D003760 ORTHO05D004672 1.1e-44 183.3 146 71.2
FAN01G2043 Fragaria x ananassa HOM05D003760 ORTHO05D004672 1.4e-44 183.0 146 70.5
PGR031G0954 Punica granatum HOM05D003760 ORTHO05D004672 1.8e-44 182.6 146 67.8
Thecc.10G166200 Theobroma cacao HOM05D003760 ORTHO05D004672 2.4e-44 182.2 145 70.3
HanXRQChr12g0382881 Helianthus annuus HOM05D003760 ORTHO05D004672 3.1e-44 181.8 144 70.8
Cpa.g.sc223.12 Carica papaya HOM05D003760 ORTHO05D004672 5.4e-44 181.0 146 69.2
Cfa006289 Carpinus fangiana HOM05D003760 ORTHO05D004672 5.4e-44 181.0 141 70.9
Manes.04G165800 Manihot esculenta HOM05D003760 ORTHO05D004672 5.4e-44 181.0 146 67.8
GSVIVG01000658001 Vitis vinifera HOM05D003760 ORTHO05D004672 5.4e-44 181.0 141 70.9
MD07G1036800 Malus domestica HOM05D003760 ORTHO05D004672 9.1e-44 180.3 141 71.6
Potri.001G026100 Populus trichocarpa HOM05D003760 ORTHO05D004672 9.1e-44 180.3 141 70.2
Ciclev10005415m.g Citrus clementina HOM05D003760 ORTHO05D004672 1.2e-43 179.9 142 69.0
DCAR_022349 Daucus carota HOM05D003760 ORTHO05D004672 1.2e-43 179.9 140 70.7
TWI63G0088 Tripterygium wilfordii HOM05D003760 ORTHO05D004672 1.2e-43 179.9 141 69.5
Dinv32036 Davidia involucrata HOM05D003760 ORTHO05D004672 1.6e-43 179.5 140 70.7
TAR636G0376 Trochodendron aralioides HOM05D003760 ORTHO05D004672 1.6e-43 179.5 141 69.5
Gohir.A05G281000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 2.0e-43 179.1 146 66.4
Gohir.D05G283000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 2.0e-43 179.1 146 66.4
Gorai.009G296500 Gossypium raimondii HOM05D003760 ORTHO05D004672 2.0e-43 179.1 146 66.4
AUR62042161 Chenopodium quinoa HOM05D003760 ORTHO05D004672 2.7e-43 178.7 146 66.4
Potri.003G199301 Populus trichocarpa HOM05D003760 ORTHO05D004672 2.7e-43 178.7 141 69.5
Potri.T126106 Populus trichocarpa HOM05D003760 ORTHO05D004672 2.7e-43 178.7 141 69.5
MSTRG.20523 Avicennia marina HOM05D003760 ORTHO05D004672 3.5e-43 178.3 141 68.8
Ciclev10001295m.g Citrus clementina HOM05D003760 ORTHO05D004672 4.5e-43 177.9 142 68.3
MBI13_g01615_MAGBIO Magnolia biondii HOM05D003760 ORTHO05D004672 5.9e-43 177.6 142 68.3
Duzib114G0596 Durio zibethinus HOM05D003760 ORTHO05D004672 7.7e-43 177.2 146 67.1
Sed0017009 Sechium edule HOM05D003760 ORTHO05D004672 7.7e-43 177.2 146 67.1
TAR633G0271 Trochodendron aralioides HOM05D003760 ORTHO05D004672 1.0e-42 176.8 141 68.1
TAR633G2507 Trochodendron aralioides HOM05D003760 ORTHO05D004672 1.0e-42 176.8 141 68.1
EL10Ac1g02286 Beta vulgaris HOM05D003760 ORTHO05D004672 1.3e-42 176.4 142 66.2
Aqoxy2G00338 Aquilegia oxysepala HOM05D003760 ORTHO05D004672 1.7e-42 176.0 142 67.6
Cc02_g29710 Coffea canephora HOM05D003760 ORTHO05D004672 2.2e-42 175.6 141 68.1
CiPaw.14G006600 Carya illinoinensis HOM05D003760 ORTHO05D004672 6.5e-42 174.1 145 69.0
ATR0075G007 Amborella trichopoda HOM05D003760 ORTHO05D004672 8.5e-42 173.7 141 66.0
CsaV3_5G024790 Cucumis sativus L. HOM05D003760 ORTHO05D004672 8.5e-42 173.7 142 68.3
AUR62033839 Chenopodium quinoa HOM05D003760 ORTHO05D004672 1.1e-41 173.3 142 66.2
Migut.B01218 Erythranthe guttata HOM05D003760 ORTHO05D004672 1.1e-41 173.3 141 67.4
Sc10g0004370 Simmondsia chinensis HOM05D003760 ORTHO05D004672 1.1e-41 173.3 145 66.2
HPP92_016595 Vanilla planifolia HOM05D003760 ORTHO05D004672 1.1e-41 173.3 142 66.2
Oeu015685.1 Olea europaea HOM05D003760 ORTHO05D004672 1.9e-41 172.6 141 67.4
SGA_v2.0_scaffold124G33635 Striga asiatica HOM05D003760 ORTHO05D004672 1.9e-41 172.6 140 67.9
Actinidia19460 Actinidia chinensis HOM05D003760 ORTHO05D004672 2.5e-41 172.2 140 67.9
Sed0003663 Sechium edule HOM05D003760 ORTHO05D004672 2.5e-41 172.2 146 64.4
AUR62035743 Chenopodium quinoa HOM05D003760 ORTHO05D004672 3.2e-41 171.8 145 65.5
Hma1.2p1_1396F.1_g280580 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 3.2e-41 171.8 140 67.1
Lsat_1_v5_gn_5_36241 Lactuca sativa HOM05D003760 ORTHO05D004672 3.2e-41 171.8 136 69.9
MELO3C005125.2 Cucumis melo HOM05D003760 ORTHO05D004672 4.2e-41 171.4 142 67.6
PSO384G0478 Papaver somniferum HOM05D003760 ORTHO05D004672 4.2e-41 171.4 146 65.8
THA.LOC104818980 Tarenaya hassleriana HOM05D003760 ORTHO05D004672 4.2e-41 171.4 138 68.8
Glyma.09G185000 Glycine max HOM05D003760 ORTHO05D004672 5.5e-41 171.0 146 67.8
Lj9A655T38 Lonicera japonica HOM05D003760 ORTHO05D004672 5.5e-41 171.0 140 66.4
Nitab4.5_0001681g0070 Nicotiana tabacum HOM05D003760 ORTHO05D004672 5.5e-41 171.0 142 65.5
Hund21541 Selenicereus undatus HOM05D003760 ORTHO05D004672 9.5e-41 170.2 137 67.9
CSS0033000 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D004672 1.6e-40 169.5 140 68.6
COL.COLO4_21460 Corchorus olitorius HOM05D003760 ORTHO05D004672 1.6e-40 169.5 138 68.8
Glyma.07G090900 Glycine max HOM05D003760 ORTHO05D004672 1.6e-40 169.5 146 67.1
Lalb_Chr08g0234711 Lupinus albus HOM05D003760 ORTHO05D004672 1.6e-40 169.5 146 66.4
PSO339G5967 Papaver somniferum HOM05D003760 ORTHO05D004672 2.1e-40 169.1 145 65.5
VMungo0464G1704 Vigna mungo HOM05D003760 ORTHO05D004672 2.1e-40 169.1 146 67.1
Ca_02468_v3 Cicer arietinum L. HOM05D003760 ORTHO05D004672 2.8e-40 168.7 146 66.4
Medtr5g031790 Medicago truncatula HOM05D003760 ORTHO05D004672 2.8e-40 168.7 146 67.1
Sabra03G0148000 Salix brachista HOM05D003760 ORTHO05D004672 2.8e-40 168.7 137 67.9
Hma1.2p1_0121F.1_g057510 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 3.6e-40 168.3 148 64.9
Aa31LG5G17870 Aethionema arabicum HOM05D003760 ORTHO05D004672 4.7e-40 167.9 138 65.9
arahy.Tifrunner.gnm1.ann1.88C8QI Arachis hypogaea HOM05D003760 ORTHO05D004672 4.7e-40 167.9 146 66.4
arahy.Tifrunner.gnm1.ann1.R8F3HD Arachis hypogaea HOM05D003760 ORTHO05D004672 4.7e-40 167.9 146 66.4
Phvul.004G157800 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 4.7e-40 167.9 146 66.4
ECA233G5140 Erigeron canadensis HOM05D003760 ORTHO05D004672 6.1e-40 167.5 138 68.1
Zm00001eb223560 Zea mays HOM05D003760 ORTHO05D004672 8.0e-40 167.2 142 64.8
A05p40900 Brassica napus HOM05D003760 ORTHO05D004672 1.0e-39 166.8 147 63.3
BraA05t22819Z Brassica rapa HOM05D003760 ORTHO05D004672 1.0e-39 166.8 147 63.3
CAN.G476.4 Capsicum annuum HOM05D003760 ORTHO05D004672 1.4e-39 166.4 141 63.8
Peaxi162Scf01732g00023 Petunia axillaris HOM05D003760 ORTHO05D004672 1.4e-39 166.4 142 64.1
BraA01t04387Z Brassica rapa HOM05D003760 ORTHO05D004672 1.8e-39 166.0 138 65.9
Zm00001eb048720 Zea mays HOM05D003760 ORTHO05D004672 1.8e-39 166.0 142 64.1
CARHR081950 Cardamine hirsuta HOM05D003760 ORTHO05D004672 2.3e-39 165.6 138 65.9
Nn2g14898 Nelumbo nucifera HOM05D003760 ORTHO05D004672 2.3e-39 165.6 141 63.8
Sp3g06250 Schrenkiella parvula HOM05D003760 ORTHO05D004672 2.3e-39 165.6 138 65.9
C05p60000 Brassica napus HOM05D003760 ORTHO05D004672 4.0e-39 164.9 147 62.6
BNapus_Darmor_BZH_scaffold_109p00130 Brassica napus HOM05D003760 ORTHO05D004672 5.2e-39 164.5 138 65.2
Ah.11g039100 Amaranthus hybridus HOM05D003760 ORTHO05D004672 6.8e-39 164.1 129 69.0
Lj3g0013265 Lotus japonicus HOM05D003760 ORTHO05D004672 6.8e-39 164.1 146 63.7
Sabra01G0019300 Salix brachista HOM05D003760 ORTHO05D004672 8.8e-39 163.7 172 56.4
BolC1t05559H Brassica oleracea HOM05D003760 ORTHO05D004672 1.2e-38 163.3 138 64.5
BolC5t34655H Brassica oleracea HOM05D003760 ORTHO05D004672 1.5e-38 162.9 147 61.9
Glyma.11G154300 Glycine max HOM05D003760 ORTHO05D004672 1.5e-38 162.9 143 64.3
MSTRG.16994 Avicennia marina HOM05D003760 ORTHO05D004672 5.7e-38 161.0 138 65.2
Lsat_1_v5_gn_8_34020 Lactuca sativa HOM05D003760 ORTHO05D004672 5.7e-38 161.0 144 65.3
Nitab4.5_0000320g0110 Nicotiana tabacum HOM05D003760 ORTHO05D004672 5.7e-38 161.0 135 63.7
Phvul.005G029500 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 1.7e-37 159.5 142 64.8
CDE07G1968 Ceratophyllum demersum HOM05D003760 ORTHO05D004672 2.8e-37 158.7 138 62.3
FAN17G2831 Fragaria x ananassa HOM05D003760 ORTHO05D004672 6.3e-37 157.5 141 59.6
Solyc11g005600.2 Solanum lycopersicum HOM05D003760 ORTHO05D004672 8.3e-37 157.1 142 60.6
Sopen11g001570 Solanum pennellii HOM05D003760 ORTHO05D004672 8.3e-37 157.1 142 60.6
AT3G07300 Arabidopsis thaliana HOM05D003760 ORTHO05D004672 1.1e-36 156.8 138 64.5
AL3G18600 Arabidopsis lyrata HOM05D003760 ORTHO05D004672 1.8e-36 156.0 138 63.8
FvH4_4g04150 Fragaria vesca HOM05D003760 ORTHO05D004672 5.4e-36 154.5 140 57.9
QL06p019987 Quercus lobata HOM05D003760 ORTHO05D004672 1.6e-35 152.9 141 58.9
RcHm_v2.0_Chr4g0394571 Rosa chinensis HOM05D003760 ORTHO05D004672 1.6e-35 152.9 141 57.4
Carub.0003s0684 Capsella rubella HOM05D003760 ORTHO05D004672 2.7e-35 152.1 138 63.0
FAN12G0242 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.7e-35 152.1 141 57.4
Rhsim07G0066200 Rhododendron simsii HOM05D003760 ORTHO05D004672 4.5e-35 151.4 178 53.4
unitig_578.g16298 Utricularia gibba HOM05D003760 ORTHO05D004672 4.5e-35 151.4 142 59.9
SEGI_24692 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 5.9e-35 151.0 140 61.4
vmacro15463 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 5.9e-35 151.0 136 61.0
SEGI_21043 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 7.8e-35 150.6 140 61.4
FAN22G1391 Fragaria x ananassa HOM05D003760 ORTHO05D004672 1.7e-34 149.4 141 56.7
Atru.chr4.1982 Acer truncatum HOM05D003760 ORTHO05D004672 3.8e-34 148.3 139 58.3
Prupe.1G044800 Prunus persica HOM05D003760 ORTHO05D004672 3.8e-34 148.3 141 54.6
CSS0016471 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D004672 5.0e-34 147.9 137 58.4
Actinidia39916 Actinidia chinensis HOM05D003760 ORTHO05D004672 1.1e-33 146.7 136 60.3
COL.COLO4_15929 Corchorus olitorius HOM05D003760 ORTHO05D004672 1.9e-33 146.0 135 59.3
Rhsim02G0042300 Rhododendron simsii HOM05D003760 ORTHO05D004672 1.9e-33 146.0 141 57.4
Mapoly0105s0017 Marchantia polymorpha HOM05D003760 ORTHO05D004672 4.3e-33 144.8 136 58.1
Potri.010G068600 Populus trichocarpa HOM05D003760 ORTHO05D004672 5.6e-33 144.4 142 54.9
vmacro22865 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 1.2e-32 143.3 208 44.7
BcaB04g21296 Brassica carinata HOM05D003760 ORTHO05D004672 1.6e-32 142.9 138 59.4
Ciclev10006759m.g Citrus clementina HOM05D003760 ORTHO05D004672 2.1e-32 142.5 140 53.6
Nitab4.5_0001425g0120 Nicotiana tabacum HOM05D003760 ORTHO05D004672 2.1e-32 142.5 138 58.0
Nitab4.5_0006936g0020 Nicotiana tabacum HOM05D003760 ORTHO05D004672 3.6e-32 141.7 140 57.1
Sopen09g033310 Solanum pennellii HOM05D003760 ORTHO05D004672 8.0e-32 140.6 140 57.9
AagrBONN_evm.TU.Sc2ySwM_344.807 Anthoceros agrestis HOM05D003760 ORTHO05D004672 1.4e-31 139.8 136 57.4
PGSC0003DMG400017207 Solanum tuberosum HOM05D003760 ORTHO05D004672 1.4e-31 139.8 140 57.9
Pp3c21_14090 Physcomitrium patens HOM05D003760 ORTHO05D004672 1.8e-31 139.4 136 56.6
MD13G1218200 Malus domestica HOM05D003760 ORTHO05D004672 3.0e-31 138.7 141 53.2
CAN.G220.44 Capsicum annuum HOM05D003760 ORTHO05D004672 6.8e-31 137.5 136 59.6
Peaxi162Scf00602g00420 Petunia axillaris HOM05D003760 ORTHO05D004672 8.9e-31 137.1 140 57.1
Pp3c10_19890 Physcomitrium patens HOM05D003760 ORTHO05D004672 1.3e-29 133.3 138 54.3
SMO340G0195 Selaginella moellendorffii HOM05D003760 ORTHO05D004672 1.7e-29 132.9 131 55.7
Sabra10G0038400 Salix brachista HOM05D003760 ORTHO05D004672 2.2e-29 132.5 167 49.1
Psat6g019840 Pisum sativum HOM05D003760 ORTHO05D004672 3.7e-29 131.7 141 58.9
AUR62043363 Chenopodium quinoa HOM05D003760 ORTHO05D004672 8.3e-29 130.6 117 64.1
TAR701G0001 Trochodendron aralioides HOM05D003760 ORTHO05D004672 5.4e-28 127.9 115 64.3
ClCG01G007720 Citrullus lanatus HOM05D003760 ORTHO05D004672 9.2e-28 127.1 115 65.2
TPR.G36778 Trifolium pratense HOM05D003760 ORTHO05D004672 1.5e-25 119.8 116 64.7
Duzib128G1330 Durio zibethinus HOM05D003760 ORTHO05D004672 1.0e-23 113.6 114 59.6
Thhalv10007798m.g Eutrema salsugineum HOM05D003760 ORTHO05D004672 8.9e-23 110.5 107 59.8
PRCOL_00001306 Prasinoderma coloniale HOM05D003760 ORTHO05D004672 9.8e-22 107.1 130 47.7
Actinidia06253 Actinidia chinensis HOM05D003760 ORTHO05D004672 1.7e-21 106.3 63 76.2
Actinidia06251 Actinidia chinensis HOM05D003760 ORTHO05D004672 1.6e-19 99.8 63 76.2
Solyc09g090400.4 Solanum lycopersicum HOM05D003760 ORTHO05D004672 6.0e-19 97.8 113 54.9
Oeu014754.1 Olea europaea HOM05D003760 ORTHO05D004672 1.0e-18 97.1 63 66.7
CBR_g42076 Chara braunii HOM05D003760 ORTHO05D004672 5.6e-17 91.3 113 49.6
Cfa022448 Carpinus fangiana HOM05D003760 ORTHO05D004672 1.2e-14 83.6 121 41.3
Cc03_g05890 Coffea canephora HOM05D003760 ORTHO05D004672 1.5e-14 83.2 107 50.5
Psat6g019960 Pisum sativum HOM05D003760 ORTHO05D004672 2.2e-13 79.3 51 86.3
Cre16.g662902 Chlamydomonas reinhardtii HOM05D003760 ORTHO05D004672 1.1e-12 77.0 235 28.5
Dinv09260 Davidia involucrata HOM05D003760 ORTHO05D004672 1.1e-12 77.0 45 93.3
Os10g0392700 Oryza sativa ssp. japonica HOM05D003760 ORTHO05D004672 1.9e-12 76.3 47 85.1
RcHm_v2.0_Chr1g0378031 Rosa chinensis HOM05D003760 ORTHO05D004672 4.1e-12 75.1 47 89.4
MCO16G454 Micromonas commoda HOM05D003760 ORTHO05D004672 1.0e-10 70.5 146 34.2
RcHm_v2.0_Chr2g0146721 Rosa chinensis HOM05D003760 ORTHO05D004672 6.6e-10 67.8 45 86.7
Actinidia06249 Actinidia chinensis HOM05D003760 ORTHO05D004672 2.8e-08 62.4 37 73.0
C03p42780 Brassica napus HOM05D003760 ORTHO05D004672 8.9e-07 57.4 41 75.6
Cre16.g687518 Chlamydomonas reinhardtii HOM05D004080 ORTHO05D004855 8.9e-07 57.4 112 34.8
A03p35180 Brassica napus HOM05D003760 ORTHO05D004672 4.4e-06 55.1 40 72.5


User provided reference genes

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