Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p029185 Quercus lobata HOM05D004633 ORTHO05D005503 8.9e-53 209.9 100 100.0
QL04p014325 Quercus lobata HOM05D004633 ORTHO05D005503 8.9e-53 209.9 100 100.0
QL11p046130 Quercus lobata HOM05D004633 ORTHO05D005503 8.9e-53 209.9 100 100.0
QL05p004270 Quercus lobata HOM05D004633 ORTHO05D005503 1.4e-45 186.0 92 94.6
QL10p012961 Quercus lobata HOM05D004633 ORTHO05D005503 3.5e-41 171.4 85 96.5
QL10p045366 Quercus lobata HOM05D004633 ORTHO05D005503 3.5e-41 171.4 91 91.2
QL06p040312 Quercus lobata HOM05D004633 ORTHO05D005503 1.6e-17 92.8 44 95.5
Cc07_g06290 Coffea canephora HOM05D004633 ORTHO05D005503 1.8e-16 89.4 44 90.9
Duzib147G0002 Durio zibethinus HOM05D004633 ORTHO05D005503 3.0e-16 88.6 44 88.6
AL8G44120 Arabidopsis lyrata HOM05D004633 ORTHO05D005503 3.9e-16 88.2 43 90.7
AT5G67220 Arabidopsis thaliana HOM05D004633 ORTHO05D005503 3.9e-16 88.2 43 90.7
BcaB04g20070 Brassica carinata HOM05D004633 ORTHO05D005503 3.9e-16 88.2 43 90.7
CANSAT25G1160 Cannabis sativa HOM05D004633 ORTHO05D005503 3.9e-16 88.2 44 90.9
CARHR280410 Cardamine hirsuta HOM05D004633 ORTHO05D005503 3.9e-16 88.2 43 90.7
Eucgr.H02218 Eucalyptus grandis HOM05D004633 ORTHO05D005503 3.9e-16 88.2 44 90.9
Eucgr.L01089 Eucalyptus grandis HOM05D004633 ORTHO05D005503 3.9e-16 88.2 44 90.9
FAN26G1576 Fragaria x ananassa HOM05D004633 ORTHO05D005503 3.9e-16 88.2 45 84.4
Prupe.6G230700 Prunus persica HOM05D004633 ORTHO05D005503 3.9e-16 88.2 44 86.4
BcaC04g23204 Brassica carinata HOM05D004633 ORTHO05D005503 5.1e-16 87.8 43 88.4
A09p09480 Brassica napus HOM05D004633 ORTHO05D005503 5.1e-16 87.8 43 88.4
C09p11170 Brassica napus HOM05D004633 ORTHO05D005503 5.1e-16 87.8 43 88.4
BraA09t36596Z Brassica rapa HOM05D004633 ORTHO05D005503 5.1e-16 87.8 43 88.4
FAN19G2847 Fragaria x ananassa HOM05D004633 ORTHO05D005503 5.1e-16 87.8 44 86.4
FAN28G1894 Fragaria x ananassa HOM05D004633 ORTHO05D005503 5.1e-16 87.8 44 86.4
FAN28G2116 Fragaria x ananassa HOM05D004633 ORTHO05D005503 5.1e-16 87.8 44 86.4
Rhsim08G0098400 Rhododendron simsii HOM05D004633 ORTHO05D005503 5.1e-16 87.8 43 93.0
RcHm_v2.0_Chr2g0106351 Rosa chinensis HOM05D004633 ORTHO05D005503 5.1e-16 87.8 44 86.4
TAR376G0286 Trochodendron aralioides HOM05D004633 ORTHO05D005503 5.1e-16 87.8 44 88.6
Dinv30022 Davidia involucrata HOM05D004633 ORTHO05D005503 6.7e-16 87.4 43 90.7
Lalb_Chr05g0226241 Lupinus albus HOM05D004633 ORTHO05D005503 6.7e-16 87.4 97 48.5
Thecc.01G061800 Theobroma cacao HOM05D004633 ORTHO05D005503 6.7e-16 87.4 44 86.4
MSTRG.3439 Avicennia marina HOM05D004633 ORTHO05D005503 8.7e-16 87.0 44 86.4
CiPaw.01G014400 Carya illinoinensis HOM05D004633 ORTHO05D005503 8.7e-16 87.0 44 86.4
CDE02G1921 Ceratophyllum demersum HOM05D004633 ORTHO05D005503 8.7e-16 87.0 44 88.6
COL.COLO4_11464 Corchorus olitorius HOM05D004633 ORTHO05D005503 8.7e-16 87.0 43 90.7
Lj4g0002857 Lotus japonicus HOM05D004633 ORTHO05D005503 8.7e-16 87.0 44 86.4
Atru.chr3.268 Acer truncatum HOM05D004633 ORTHO05D005503 1.1e-15 86.7 44 86.4
Aa31LG1G15750 Aethionema arabicum HOM05D004633 ORTHO05D005503 1.1e-15 86.7 44 86.4
BolC9t54006H Brassica oleracea HOM05D004633 ORTHO05D005503 1.1e-15 86.7 43 86.0
Carub.0008s2729 Capsella rubella HOM05D004633 ORTHO05D005503 1.1e-15 86.7 43 88.4
Ca_22131_v3 Cicer arietinum L. HOM05D004633 ORTHO05D005503 1.1e-15 86.7 44 84.1
Thhalv10004143m.g Eutrema salsugineum HOM05D004633 ORTHO05D005503 1.1e-15 86.7 43 88.4
Glyma.05G096300 Glycine max HOM05D004633 ORTHO05D005503 1.1e-15 86.7 44 84.1
Glyma.17G169000 Glycine max HOM05D004633 ORTHO05D005503 1.1e-15 86.7 44 84.1
MD15G1287200 Malus domestica HOM05D004633 ORTHO05D005503 1.1e-15 86.7 44 84.1
Sp2g29450 Schrenkiella parvula HOM05D004633 ORTHO05D005503 1.1e-15 86.7 43 88.4
TPR.G14594 Trifolium pratense HOM05D004633 ORTHO05D005503 1.1e-15 86.7 44 84.1
FAN23G1966 Fragaria x ananassa HOM05D004633 ORTHO05D005503 1.5e-15 86.3 44 86.4
Actinidia16468 Actinidia chinensis HOM05D004633 ORTHO05D005503 1.9e-15 85.9 43 90.7
FvH4_1g16470 Fragaria vesca HOM05D004633 ORTHO05D005503 1.9e-15 85.9 44 84.1
Psat4g085040 Pisum sativum HOM05D004633 ORTHO05D005503 1.9e-15 85.9 44 84.1
PGR102G1926 Punica granatum HOM05D004633 ORTHO05D005503 1.9e-15 85.9 43 88.4
TWI73G0624 Tripterygium wilfordii HOM05D004633 ORTHO05D005503 1.9e-15 85.9 44 86.4
vmacro17967 Vaccinium macrocarpon HOM05D004633 ORTHO05D005503 1.9e-15 85.9 43 88.4
EL10Ac6g15705 Beta vulgaris HOM05D004633 ORTHO05D005503 2.5e-15 85.5 44 84.1
Lsat_1_v5_gn_3_90261 Lactuca sativa HOM05D004633 ORTHO05D005503 2.5e-15 85.5 43 88.4
Lsat_1_v5_gn_4_164460 Lactuca sativa HOM05D004633 ORTHO05D005503 2.5e-15 85.5 43 88.4
SHI29406 Sapria himalayana HOM05D004633 ORTHO05D005503 2.5e-15 85.5 44 86.4
CSS0046694 Camellia sinensis var. sinensis HOM05D004633 ORTHO05D005503 3.3e-15 85.1 43 86.0
ClCG02G008020 Citrullus lanatus HOM05D004633 ORTHO05D005503 3.3e-15 85.1 44 84.1
CsaV3_2G035640 Cucumis sativus L. HOM05D004633 ORTHO05D005503 3.3e-15 85.1 44 84.1
Medtr4g094905 Medicago truncatula HOM05D004633 ORTHO05D005503 3.3e-15 85.1 44 84.1
Phvul.003G241100 Phaseolus vulgaris HOM05D004633 ORTHO05D005503 3.3e-15 85.1 44 81.8
Potri.007G047300 Populus trichocarpa HOM05D004633 ORTHO05D005503 3.3e-15 85.1 44 86.4
Sabra07G0042200 Salix brachista HOM05D004633 ORTHO05D005503 3.3e-15 85.1 44 86.4
Sed0006372 Sechium edule HOM05D004633 ORTHO05D005503 3.3e-15 85.1 44 84.1
Sed0019372 Sechium edule HOM05D004633 ORTHO05D005503 3.3e-15 85.1 44 84.1
VMungo0251G3622 Vigna mungo HOM05D004633 ORTHO05D005503 3.3e-15 85.1 44 81.8
arahy.Tifrunner.gnm1.ann1.H6KR5I Arachis hypogaea HOM05D004633 ORTHO05D005503 4.3e-15 84.7 43 86.0
arahy.Tifrunner.gnm1.ann1.ZUJJ2F Arachis hypogaea HOM05D004633 ORTHO05D005503 4.3e-15 84.7 43 86.0
Cfa004047 Carpinus fangiana HOM05D004633 ORTHO05D005503 4.3e-15 84.7 44 86.4
Ciclev10025630m.g Citrus clementina HOM05D004633 ORTHO05D005503 4.3e-15 84.7 44 84.1
Dinv26852 Davidia involucrata HOM05D004633 ORTHO05D005503 4.3e-15 84.7 43 88.4
Gohir.A02G155700 Gossypium hirsutum HOM05D004633 ORTHO05D005503 4.3e-15 84.7 110 44.5
Nn1g04752 Nelumbo nucifera HOM05D004633 ORTHO05D005503 4.3e-15 84.7 43 88.4
SGA_v2.0_scaffold10G05122 Striga asiatica HOM05D004633 ORTHO05D005503 4.3e-15 84.7 44 84.1
Hma1.2p1_0017F.1_g011780 Hydrangea macrophylla HOM05D004633 ORTHO05D005503 5.6e-15 84.3 43 86.0
Peaxi162Scf00365g00413 Petunia axillaris HOM05D004633 ORTHO05D005503 5.6e-15 84.3 44 86.4
GSVIVG01022068001 Vitis vinifera HOM05D004633 ORTHO05D005503 5.6e-15 84.3 43 86.0
MELO3C024784.2 Cucumis melo HOM05D004633 ORTHO05D005503 7.4e-15 84.0 44 81.8
Migut.L00177 Erythranthe guttata HOM05D004633 ORTHO05D005503 7.4e-15 84.0 44 84.1
Gohir.D03G024900 Gossypium hirsutum HOM05D004633 ORTHO05D005503 7.4e-15 84.0 110 44.5
Gorai.003G026500 Gossypium raimondii HOM05D004633 ORTHO05D005503 7.4e-15 84.0 110 44.5
Manes.13G119720 Manihot esculenta HOM05D004633 ORTHO05D005503 7.4e-15 84.0 42 88.1
Zm00001eb227810 Zea mays HOM05D004633 ORTHO05D005503 7.4e-15 84.0 44 84.1
HanXRQChr15g0490881 Helianthus annuus HOM05D004633 ORTHO05D005503 9.6e-15 83.6 43 88.4
AUR62003922 Chenopodium quinoa HOM05D004633 ORTHO05D005503 1.3e-14 83.2 44 81.8
AUR62038236 Chenopodium quinoa HOM05D004633 ORTHO05D005503 1.3e-14 83.2 44 81.8
Haze_15364 Corylus avellana HOM05D004633 ORTHO05D005503 1.3e-14 83.2 44 84.1
Sc03g0001790 Simmondsia chinensis HOM05D004633 ORTHO05D005503 1.3e-14 83.2 44 81.8
Cpa.g.sc55.107 Carica papaya HOM05D004633 ORTHO05D005503 2.1e-14 82.4 44 79.5
Nitab4.5_0000929g0040 Nicotiana tabacum HOM05D004633 ORTHO05D005503 2.1e-14 82.4 44 81.8
HPP92_012974 Vanilla planifolia HOM05D004633 ORTHO05D005503 2.1e-14 82.4 44 81.8
Actinidia03804 Actinidia chinensis HOM05D004633 ORTHO05D005503 2.8e-14 82.0 44 84.1
Hund13907 Selenicereus undatus HOM05D004633 ORTHO05D005503 2.8e-14 82.0 44 81.8
ECA232G1704 Erigeron canadensis HOM05D004633 ORTHO05D005503 3.7e-14 81.6 43 83.7
Sopen03g008320 Solanum pennellii HOM05D004633 ORTHO05D005503 3.7e-14 81.6 43 83.7
Manes.12G107300 Manihot esculenta HOM05D004633 ORTHO05D005503 4.8e-14 81.3 43 81.4
Solyc03g044270.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 4.8e-14 81.3 43 83.7
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 4.8e-14 81.3 44 79.5
ECA246G0986 Erigeron canadensis HOM05D004633 ORTHO05D005503 6.2e-14 80.9 43 81.4
HanXRQChr11g0328291 Helianthus annuus HOM05D004633 ORTHO05D005503 8.1e-14 80.5 43 83.7
HanXRQChr11g0348441 Helianthus annuus HOM05D004633 ORTHO05D005503 1.1e-13 80.1 43 81.4
PGSC0003DMG400006483 Solanum tuberosum HOM05D004633 ORTHO05D005503 1.1e-13 80.1 43 81.4
THA.LOC104819242 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 1.1e-13 80.1 42 83.3
THA.LOC104821245 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 1.4e-13 79.7 43 83.7
Os06g0712900 Oryza sativa ssp. japonica HOM05D004633 ORTHO05D005503 2.4e-13 79.0 42 83.3
Aqoxy5G01172 Aquilegia oxysepala HOM05D004633 ORTHO05D005503 4.0e-13 78.2 44 79.5
Solyc02g093060.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 5.3e-13 77.8 43 79.1
Sopen02g037630 Solanum pennellii HOM05D004633 ORTHO05D005503 5.3e-13 77.8 43 79.1
ECA246G1233 Erigeron canadensis HOM05D004633 ORTHO05D005503 6.9e-13 77.4 44 75.0
BcaB02g09941 Brassica carinata HOM05D004633 ORTHO05D005503 1.2e-12 76.6 43 81.4
ATR0001G042 Amborella trichopoda HOM05D004633 ORTHO05D005503 2.0e-12 75.9 42 81.0
CAN.G370.28 Capsicum annuum HOM05D004633 ORTHO05D005503 2.0e-12 75.9 43 76.7
PGSC0003DMG400024962 Solanum tuberosum HOM05D004633 ORTHO05D005503 2.0e-12 75.9 43 76.7
Peaxi162Scf00549g00221 Petunia axillaris HOM05D004633 ORTHO05D005503 2.6e-12 75.5 42 78.6
BcaC06g34804 Brassica carinata HOM05D004633 ORTHO05D005503 3.4e-12 75.1 43 79.1
A07p16750 Brassica napus HOM05D004633 ORTHO05D005503 3.4e-12 75.1 43 79.1
C07p24480 Brassica napus HOM05D004633 ORTHO05D005503 3.4e-12 75.1 43 79.1
BolC7t42968H Brassica oleracea HOM05D004633 ORTHO05D005503 3.4e-12 75.1 43 79.1
BraA07t29400Z Brassica rapa HOM05D004633 ORTHO05D005503 3.4e-12 75.1 43 79.1
SEGI_00124 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 5.8e-12 74.3 42 78.6
SEGI_29602 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 5.8e-12 74.3 42 78.6
HanXRQChr15g0473611 Helianthus annuus HOM05D004633 ORTHO05D005503 7.6e-12 73.9 44 72.7
SMO169G0138 Selaginella moellendorffii HOM05D004633 ORTHO05D005503 2.5e-10 68.9 41 68.3
Pp3c3_25920 Physcomitrium patens HOM05D004633 ORTHO05D005503 5.5e-10 67.8 42 66.7
Cre12.g486900 Chlamydomonas reinhardtii HOM05D004633 ORTHO05D005503 1.2e-09 66.6 40 67.5
Mapoly0125s0018 Marchantia polymorpha HOM05D004633 ORTHO05D005503 6.0e-09 64.3 41 70.7
Mapoly0048s0005 Marchantia polymorpha HOM05D004633 ORTHO05D005503 2.3e-08 62.4 41 61.0
MCO16G071 Micromonas commoda HOM05D004633 ORTHO05D005503 1.9e-07 59.3 42 61.9
Pp3c13_19950 Physcomitrium patens HOM05D004633 ORTHO05D005503 1.9e-07 59.3 43 65.1
Lj7A74G30 Lonicera japonica HOM05D004633 ORTHO05D005503 8.2e-06 53.9 28 85.7


User provided reference genes

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