Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 0.0e+00 1583.9 795 100.0
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 0.0e+00 1075.8 704 77.4
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 1.6e-274 949.5 708 67.4
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 1.9e-270 936.0 709 66.1
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 3.2e-270 935.3 705 65.4
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.3e-268 929.1 706 65.3
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 1.5e-267 926.4 706 65.2
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 1.6e-266 922.9 708 65.0
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 3.4e-264 915.2 723 63.9
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 3.4e-264 915.2 707 63.8
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 2.2e-263 912.5 711 65.5
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.1e-262 910.2 723 63.3
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 1.4e-262 909.8 706 64.9
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 1.6e-261 906.4 683 64.9
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 6.2e-258 894.4 610 75.1
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 2.4e-257 892.5 707 62.4
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 1.3e-255 886.7 705 64.0
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 8.4e-255 884.0 706 63.6
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 5.8e-248 861.3 713 59.7
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 7.1e-246 854.4 706 59.1
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 2.7e-245 852.4 705 58.9
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 2.3e-244 849.4 699 59.4
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 1.3e-242 843.6 723 57.4
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 1.8e-241 839.7 705 61.1
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 8.5e-239 830.9 704 60.2
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 1.1e-238 830.5 758 57.9
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 2.5e-238 829.3 705 58.9
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 2.7e-237 825.9 706 60.3
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 3.6e-237 825.5 704 59.8
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 7.9e-237 824.3 707 57.4
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 5.7e-235 818.1 711 57.5
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 3.1e-233 812.4 708 58.8
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 9.1e-233 810.8 714 57.6
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 1.4e-230 803.5 706 59.1
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 7.9e-229 797.7 705 56.6
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 1.3e-226 790.4 708 55.9
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 2.8e-226 789.3 709 56.8
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 2.8e-226 789.3 699 58.4
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 5.3e-225 785.0 707 55.4
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 7.0e-225 784.6 705 57.6
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 2.0e-224 783.1 709 55.3
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 4.5e-224 781.9 666 58.4
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 1.7e-223 780.0 708 56.6
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.1e-222 777.3 702 57.5
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 2.7e-221 772.7 714 54.9
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 3.6e-221 772.3 706 55.8
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 6.7e-220 768.1 590 66.4
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 6.7e-220 768.1 707 54.6
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 1.7e-218 763.5 709 54.7
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 3.7e-218 762.3 706 55.2
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 1.4e-217 760.4 702 55.0
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 4.1e-217 758.8 702 54.8
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 7.0e-217 758.1 709 55.0
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 9.1e-217 757.7 673 59.0
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 4.5e-216 755.4 698 55.0
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 1.3e-215 753.8 712 53.9
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 7.2e-214 748.0 705 54.6
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 1.6e-213 746.9 705 54.5
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 2.6e-211 739.6 709 53.0
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 7.5e-211 738.0 699 53.8
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 2.0e-208 729.9 721 51.6
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.9e-206 723.4 709 53.3
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 1.0e-204 717.6 719 51.2
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 7.5e-203 711.4 694 51.9
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 4.1e-201 705.7 709 51.6
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 5.4e-201 705.3 689 52.4
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 3.5e-200 702.6 689 52.0
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 1.0e-196 691.0 700 51.7
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 8.9e-196 688.0 744 49.6
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 1.3e-194 684.1 515 63.5
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 4.1e-193 679.1 516 63.0
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 2.1e-189 666.8 535 64.1
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 2.3e-188 663.3 605 55.9
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 3.1e-188 662.9 711 49.8
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 1.1e-185 654.4 709 48.9
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 3.0e-183 646.4 465 68.4
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 7.1e-177 625.2 710 47.5
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 2.1e-173 613.6 448 66.3
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 1.4e-172 610.9 448 66.5
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 2.4e-169 600.1 516 56.6
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 4.3e-166 589.3 408 71.1
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 7.6e-163 578.6 613 51.9
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 1.6e-157 560.8 449 64.8
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 6.9e-156 555.4 558 50.2
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 3.2e-153 546.6 477 58.5
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 2.5e-150 537.0 645 48.2
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 9.6e-150 535.0 537 51.4
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.1e-148 531.6 437 62.2
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 1.9e-142 510.8 631 46.0
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 1.6e-133 481.1 491 50.9
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 3.7e-133 479.9 549 47.2
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 4.6e-120 436.4 674 40.1
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.1e-118 431.8 380 57.1
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 4.7e-112 409.8 495 46.1
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 5.7e-102 376.3 839 33.0
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 2.8e-101 374.0 596 38.6
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.9e-97 361.3 707 34.7
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 9.8e-94 349.0 769 32.6
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 4.8e-93 346.7 235 70.2
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.9e-89 334.7 704 33.0
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 2.1e-88 331.3 704 32.8
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 8.8e-87 325.9 825 29.6
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 2.6e-78 297.7 209 68.4
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.6e-78 297.7 385 43.6
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 3.4e-78 297.4 186 77.4
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.3e-61 242.3 320 43.8
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 2.9e-61 241.1 216 56.5
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 1.5e-46 192.2 146 67.1
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 3.8e-45 187.6 160 55.0
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.6e-40 172.2 146 56.8
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 5.3e-39 167.2 131 58.0
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 6.0e-35 153.7 204 44.1
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 1.8e-34 152.1 208 43.8
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 3.3e-33 147.9 303 34.0
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 8.1e-32 143.3 89 71.9
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 1.4e-31 142.5 132 56.8
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 7.6e-30 136.7 111 57.7
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 2.2e-29 135.2 210 44.3
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.8e-23 115.5 247 30.8
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 9.6e-17 93.2 59 67.8
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 5.3e-15 87.4 76 56.6
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 3.2e-12 78.2 43 74.4
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 3.3e-09 68.2 67 55.2
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 7.4e-09 67.0 72 50.0
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 4.1e-07 61.2 89 40.4
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 5.3e-07 60.8 46 65.2
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.5e-06 59.3 69 44.9
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 5.9e-06 57.4 390 22.3


User provided reference genes

Program Settings