Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 3.8e-34 147.5 70 100.0
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 6.3e-29 130.2 70 90.0
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 7.2e-17 90.1 70 65.7
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 2.7e-16 88.2 70 64.3
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 2.6e-14 81.6 74 50.0
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 9.7e-14 79.7 69 53.6
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 9.7e-14 79.7 69 53.6
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 1.3e-13 79.3 69 52.2
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 1.3e-13 79.3 70 60.0
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 3.7e-13 77.8 69 50.7
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 1.4e-12 75.9 69 52.2
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 1.4e-12 75.9 69 53.6
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 3.1e-12 74.7 68 51.5
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 5.3e-12 73.9 69 50.7
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 5.3e-12 73.9 65 52.3
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 5.3e-12 73.9 69 47.8
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 7.0e-12 73.6 69 53.6
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 9.1e-12 73.2 68 51.5
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 9.1e-12 73.2 70 48.6
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 1.2e-11 72.8 65 50.8
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 1.2e-11 72.8 70 48.6
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 1.2e-11 72.8 70 50.0
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.6e-11 72.4 70 51.4
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.6e-11 72.4 70 51.4
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.6e-11 72.4 70 51.4
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.6e-11 72.4 70 51.4
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 1.6e-11 72.4 67 53.7
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 1.6e-11 72.4 70 52.9
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 2.0e-11 72.0 69 43.5
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 2.0e-11 72.0 69 44.9
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 2.0e-11 72.0 68 51.5
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 2.6e-11 71.6 69 46.4
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 3.5e-11 71.2 68 50.0
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 3.5e-11 71.2 68 50.0
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 3.5e-11 71.2 70 50.0
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 3.5e-11 71.2 65 52.3
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 3.5e-11 71.2 69 49.3
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 4.5e-11 70.9 70 47.1
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 5.9e-11 70.5 70 55.7
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 7.7e-11 70.1 70 50.0
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 7.7e-11 70.1 69 52.2
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 1.0e-10 69.7 65 52.3
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.0e-10 69.7 71 52.1
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.0e-10 69.7 71 52.1
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.3e-10 69.3 70 50.0
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 1.3e-10 69.3 69 53.6
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 1.7e-10 68.9 70 52.9
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 1.7e-10 68.9 70 52.9
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 2.2e-10 68.6 71 52.1
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 3.8e-10 67.8 69 47.8
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 5.0e-10 67.4 70 50.0
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 1.1e-09 66.2 65 52.3
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 1.1e-09 66.2 71 45.1
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 1.5e-09 65.9 66 51.5
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 1.9e-09 65.5 71 47.9
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 1.9e-09 65.5 68 41.2
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 1.9e-09 65.5 70 48.6
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 1.9e-09 65.5 70 50.0
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.9e-09 65.5 75 49.3
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 2.5e-09 65.1 69 44.9
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 2.5e-09 65.1 69 49.3
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 2.5e-09 65.1 69 46.4
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 2.5e-09 65.1 70 51.4
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 4.2e-09 64.3 70 45.7
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 5.5e-09 63.9 70 48.6
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 5.5e-09 63.9 65 47.7
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 5.5e-09 63.9 65 46.2
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 7.2e-09 63.5 69 49.3
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 9.4e-09 63.2 72 47.2
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 2.1e-08 62.0 70 45.7
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.1e-08 62.0 71 47.9
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 4.7e-08 60.8 70 45.7
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 4.7e-08 60.8 70 50.0
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 4.7e-08 60.8 73 47.9
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 4.7e-08 60.8 69 42.0
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 4.7e-08 60.8 70 42.9
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 6.1e-08 60.5 71 47.9
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 6.1e-08 60.5 65 50.8
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 6.1e-08 60.5 68 45.6
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 6.1e-08 60.5 65 44.6
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 8.0e-08 60.1 71 47.9
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 1.4e-07 59.3 70 41.4
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 1.8e-07 58.9 68 45.6
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.0e-07 57.8 72 45.8
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 4.0e-07 57.8 69 44.9
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 6.7e-07 57.0 69 40.6
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 6.7e-07 57.0 69 44.9
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 5.7e-06 53.9 68 35.3
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 7.5e-06 53.5 65 50.8


User provided reference genes

Program Settings