Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 4.7e-261 904.0 476 100.0
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 6.7e-191 671.0 486 74.1
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 1.5e-166 590.1 407 77.1
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 1.2e-160 570.5 476 66.4
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 4.7e-152 542.0 479 64.1
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 7.5e-150 534.6 472 63.6
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 7.3e-145 518.1 482 61.0
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 5.8e-142 508.4 477 60.4
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 1.3e-141 507.3 532 57.5
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 1.3e-141 507.3 528 57.6
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 2.7e-139 499.6 487 59.1
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 3.0e-138 496.1 479 58.7
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 2.5e-137 493.0 479 58.0
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 1.6e-136 490.3 465 59.8
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 6.2e-136 488.4 480 59.4
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 1.8e-135 486.9 472 57.6
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 8.3e-133 478.0 481 58.2
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 1.4e-132 477.2 480 59.6
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.4e-132 476.5 478 58.4
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 2.4e-132 476.5 478 58.4
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 1.6e-131 473.8 482 58.3
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.1e-131 473.4 506 56.7
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 2.7e-131 473.0 461 58.1
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 3.5e-131 472.6 477 57.4
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 1.0e-130 471.1 479 57.6
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 1.0e-130 471.1 449 59.7
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 6.6e-130 468.4 475 57.7
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 1.1e-129 467.6 475 57.5
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 1.5e-129 467.2 477 57.9
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 2.5e-129 466.5 488 54.7
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 3.3e-129 466.1 538 53.2
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 3.3e-129 466.1 477 57.4
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 5.6e-129 465.3 480 58.3
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 2.3e-127 459.9 448 60.5
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.3e-127 459.9 477 57.4
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 8.9e-127 458.0 472 55.3
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 2.6e-126 456.4 420 58.6
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 7.6e-126 454.9 474 57.0
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.3e-125 454.1 478 56.7
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.7e-125 453.8 536 52.4
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 1.1e-124 451.1 550 53.1
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.1e-124 451.1 479 56.8
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 3.0e-122 443.0 469 56.3
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 3.9e-122 442.6 465 54.0
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 5.1e-122 442.2 489 55.2
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 8.6e-122 441.4 455 56.9
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 1.6e-120 437.2 470 54.0
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 8.1e-120 434.9 484 53.9
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.1e-119 434.5 573 48.9
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 4.0e-119 432.6 356 64.0
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 3.4e-118 429.5 485 52.4
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 1.3e-117 427.6 406 57.1
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 1.3e-117 427.6 473 53.1
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 1.3e-117 427.6 485 55.5
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 6.4e-117 425.2 581 46.3
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 6.4e-117 425.2 420 54.8
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 8.4e-117 424.9 405 59.5
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 8.4e-117 424.9 468 52.6
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 8.4e-117 424.9 462 51.9
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 1.9e-116 423.7 565 48.0
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 1.9e-116 423.7 494 51.6
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 4.2e-116 422.5 461 54.0
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 1.6e-115 420.6 579 46.1
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 2.1e-115 420.2 406 56.9
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 1.0e-114 417.9 527 52.4
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.0e-114 416.4 485 52.4
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.9e-113 413.7 588 46.1
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 2.8e-112 409.8 357 61.1
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 9.0e-111 404.8 485 52.0
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 9.9e-110 401.4 529 48.0
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 1.1e-108 397.9 508 48.8
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 1.3e-106 391.0 477 51.4
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 1.8e-106 390.6 370 55.7
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.3e-106 390.2 489 51.9
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 4.3e-105 386.0 460 51.7
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 9.0e-103 378.3 475 49.7
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 4.5e-102 375.9 324 60.2
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 7.6e-102 375.2 477 50.3
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 4.9e-101 372.5 350 60.9
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 8.4e-101 371.7 494 48.4
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 1.1e-100 371.3 506 48.0
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 5.5e-100 369.0 384 51.8
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.8e-98 364.0 478 48.7
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.5e-97 360.1 479 47.8
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 5.6e-97 359.0 419 51.1
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 4.8e-96 355.9 302 57.9
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 1.1e-95 354.8 495 47.3
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 4.0e-95 352.8 509 45.0
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 3.4e-94 349.7 436 51.6
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 3.4e-94 349.7 449 46.1
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 3.8e-93 346.3 481 45.7
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 7.1e-92 342.0 355 54.9
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 3.0e-90 336.7 262 64.9
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 2.5e-84 317.0 837 32.3
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 3.2e-84 316.6 412 46.8
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 2.1e-83 313.9 332 55.4
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 4.3e-81 306.2 476 41.6
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 3.6e-75 286.6 412 43.0
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 5.2e-66 256.1 319 45.5
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.2e-61 240.7 284 45.8
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 2.3e-58 230.7 298 41.9
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 4.0e-58 229.9 330 41.2
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 7.0e-55 219.2 171 64.9
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 1.6e-54 218.0 204 55.4
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 2.9e-53 213.8 503 32.2
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 3.7e-48 196.8 245 48.2
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 4.8e-48 196.4 283 44.2
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 3.1e-47 193.7 166 60.8
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 1.0e-42 178.7 125 70.4
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 4.0e-42 176.8 218 46.8
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 9.8e-41 172.2 123 67.5
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 6.3e-40 169.5 134 62.7
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 3.4e-33 147.1 230 34.8
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 6.4e-32 142.9 280 36.8
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 8.3e-32 142.5 155 51.6
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 1.9e-28 131.3 223 37.2
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 2.5e-28 131.0 126 53.2
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.0e-25 121.3 124 51.6
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.0e-25 121.3 124 51.6
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 5.8e-25 119.8 123 52.8
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 2.0e-22 111.3 88 61.4
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.7e-22 110.9 62 80.6
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 1.1e-20 105.5 206 40.8
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.7e-16 90.5 64 60.9
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.4e-15 87.8 52 73.1
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.7e-14 84.3 115 47.8
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 3.5e-14 84.0 96 43.8
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 8.6e-13 79.3 46 78.3
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 9.5e-12 75.9 71 59.2
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 1.5e-09 68.6 150 32.0
QL04p013789 Quercus lobata HOM05D000182 ORTHO05D000112 7.6e-09 66.2 88 55.7
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 7.6e-09 66.2 50 58.0
GSVIVG01038299001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.4e-07 62.0 45 68.9
Zm00001eb138540 Zea mays HOM05D005646 ORTHO05D006828 1.4e-07 62.0 89 40.4
Actinidia19446 Actinidia chinensis HOM05D005646 ORTHO05D006828 7.1e-07 59.7 154 37.0
Sc03g0006740 Simmondsia chinensis HOM05D005646 ORTHO05D006828 7.1e-07 59.7 109 39.4
COL.COLO4_26597 Corchorus olitorius HOM05D000001 ORTHO05D010004 2.7e-06 57.8 101 43.6


User provided reference genes

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