Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p012360 Quercus lobata HOM05D017059 ORTHO05D002715 2.8e-71 271.9 147 100.0
QL04p012945 Quercus lobata HOM05D017059 ORTHO05D002715 7.0e-46 187.6 129 79.1
QL04p012977 Quercus lobata HOM05D017059 ORTHO05D002715 1.1e-43 180.3 103 95.1
QL04p012885 Quercus lobata HOM05D017059 ORTHO05D002715 5.5e-43 177.9 104 95.2
QL04p012302 Quercus lobata HOM05D017059 ORTHO05D002715 3.9e-41 171.8 91 97.8
QL04p012299 Quercus lobata HOM05D017059 ORTHO05D002715 1.7e-39 166.4 120 78.3
QL04p012988 Quercus lobata HOM05D000156 ORTHO05D002715 3.1e-38 162.2 119 74.8
QL93p2000_0053 Quercus lobata HOM05D017059 ORTHO05D002715 6.5e-36 154.5 119 73.9
QL04p012371 Quercus lobata HOM05D000156 ORTHO05D002715 5.5e-35 151.4 119 72.3
QL04p012356 Quercus lobata HOM05D017059 ORTHO05D002715 2.8e-31 139.0 119 70.6
Phvul.011G014100 Phaseolus vulgaris HOM05D000156 ORTHO05D002715 3.7e-23 112.1 140 47.9
CiPaw.14G005000 Carya illinoinensis HOM05D000156 ORTHO05D002715 5.4e-22 108.2 121 53.7
VMungo1127G1204 Vigna mungo HOM05D000156 ORTHO05D002715 9.1e-22 107.5 140 47.9
FAN01G1538 Fragaria x ananassa HOM05D000156 ORTHO05D002715 1.2e-21 107.1 123 52.8
FvH4_7g02140 Fragaria vesca HOM05D000156 ORTHO05D002715 2.0e-21 106.3 123 52.0
FAN06G2001 Fragaria x ananassa HOM05D000156 ORTHO05D002715 2.0e-21 106.3 123 52.0
FAN10G1302 Fragaria x ananassa HOM05D000156 ORTHO05D002715 7.7e-21 104.4 122 51.6
Atru.chr11.2561 Acer truncatum HOM05D000156 ORTHO05D002715 2.9e-20 102.4 107 53.3
TAR623G1675 Trochodendron aralioides HOM05D000156 ORTHO05D002715 8.6e-20 100.9 104 55.8
GSVIVG01000865001 Vitis vinifera HOM05D000156 ORTHO05D002715 1.5e-19 100.1 109 52.3
Thecc.10G003100 Theobroma cacao HOM05D000156 ORTHO05D002715 1.9e-19 99.8 143 40.6
Haze_03104 Corylus avellana HOM05D000156 ORTHO05D002715 2.5e-19 99.4 80 71.2
Glyma.09G225300 Glycine max HOM05D000156 ORTHO05D002715 3.3e-19 99.0 133 46.6
FAN03G1059 Fragaria x ananassa HOM05D000156 ORTHO05D002715 7.2e-19 97.8 123 48.8
RcHm_v2.0_Chr1g0319351 Rosa chinensis HOM05D000156 ORTHO05D002715 3.6e-18 95.5 125 48.0
Lj3g0020554 Lotus japonicus HOM05D000156 ORTHO05D002715 2.3e-17 92.8 105 53.3
Glyma.12G011600 Glycine max HOM05D000156 ORTHO05D002715 8.9e-17 90.9 133 43.6
Dinv05031 Davidia involucrata HOM05D000156 ORTHO05D002715 2.0e-16 89.7 123 45.5
TWI38G0747 Tripterygium wilfordii HOM05D000156 ORTHO05D002715 3.4e-16 89.0 122 45.1
Phvul.005G033800 Phaseolus vulgaris HOM05D000156 ORTHO05D002715 4.4e-16 88.6 119 47.1
TPR.G667 Trifolium pratense HOM05D000156 ORTHO05D002715 5.7e-16 88.2 121 47.1
Psat0s5573g0080 Pisum sativum HOM05D000156 ORTHO05D002715 1.3e-15 87.0 105 50.5
VMungo1080G0683 Vigna mungo HOM05D000156 ORTHO05D002715 3.7e-15 85.5 104 49.0
Gohir.A10G242300 Gossypium hirsutum HOM05D000156 ORTHO05D002715 6.3e-15 84.7 110 46.4
Dinv32061 Davidia involucrata HOM05D000156 ORTHO05D002715 1.1e-14 84.0 99 51.5
Lalb_Chr01g0000581 Lupinus albus HOM05D000156 ORTHO05D002715 1.1e-14 84.0 69 62.3
Gorai.011G295300 Gossypium raimondii HOM05D000156 ORTHO05D002715 2.4e-14 82.8 94 51.1
Gohir.D10G254300 Gossypium hirsutum HOM05D000156 ORTHO05D002715 3.1e-14 82.4 94 51.1
Lj3g0014501 Lotus japonicus HOM05D000156 ORTHO05D002715 4.1e-14 82.0 122 43.4
Duzib106G0915 Durio zibethinus HOM05D000156 ORTHO05D002715 7.0e-14 81.3 116 44.0
Duzib114G1024 Durio zibethinus HOM05D000156 ORTHO05D002715 9.2e-14 80.9 119 42.0
Potri.001G021000 Populus trichocarpa HOM05D000156 ORTHO05D002715 1.6e-13 80.1 144 39.6
Rhsim07G0061700 Rhododendron simsii HOM05D000156 ORTHO05D002715 2.7e-13 79.3 140 38.6
Ca_02375_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 7.8e-13 77.8 124 44.4
Hma1.2p1_0579F.1_g182690 Hydrangea macrophylla HOM05D000156 ORTHO05D002715 7.8e-13 77.8 78 52.6
Nitab4.5_0000316g0270 Nicotiana tabacum HOM05D000156 ORTHO05D002715 1.3e-12 77.0 142 35.2
Manes.11G002000 Manihot esculenta HOM05D000156 ORTHO05D002715 2.3e-12 76.3 117 45.3
Nitab4.5_0001775g0070 Nicotiana tabacum HOM05D000156 ORTHO05D002715 2.3e-12 76.3 143 35.7
Glyma.04G154200 Glycine max HOM05D000156 ORTHO05D002715 3.8e-12 75.5 127 40.2
CANSAT80G0587 Cannabis sativa HOM05D000156 ORTHO05D002715 6.6e-12 74.7 63 57.1
Peaxi162Scf00087g00014 Petunia axillaris HOM05D000156 ORTHO05D002715 1.1e-11 73.9 142 33.8
Prupe.2G026800 Prunus persica HOM05D000156 ORTHO05D002715 1.1e-11 73.9 117 43.6
Ciclev10031481m.g Citrus clementina HOM05D000156 ORTHO05D002715 1.5e-11 73.6 111 45.0
MBI13_g30228_MAGBIO Magnolia biondii HOM05D000156 ORTHO05D002715 1.5e-11 73.6 98 42.9
CAN.G410.28 Capsicum annuum HOM05D000156 ORTHO05D002715 2.5e-11 72.8 106 42.5
Ciclev10005065m.g Citrus clementina HOM05D000156 ORTHO05D002715 3.3e-11 72.4 117 41.9
Nn7g36436 Nelumbo nucifera HOM05D000156 ORTHO05D002715 5.6e-11 71.6 117 39.3
PGSC0003DMG400006824 Solanum tuberosum HOM05D000156 ORTHO05D002715 5.6e-11 71.6 143 34.3
TPR.G20246 Trifolium pratense HOM05D000156 ORTHO05D002715 5.6e-11 71.6 115 40.0
Ca_26246_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 7.3e-11 71.2 109 45.0
Cpa.g.sc197.18 Carica papaya HOM05D000156 ORTHO05D002715 9.5e-11 70.9 76 53.9
Medtr0047s0040 Medicago truncatula HOM05D000156 ORTHO05D002715 1.6e-10 70.1 91 46.2
DCAR_003234 Daucus carota HOM05D000156 ORTHO05D002715 2.1e-10 69.7 140 35.7
vmacro13719 Vaccinium macrocarpon HOM05D000156 ORTHO05D002715 2.8e-10 69.3 140 33.6
Sabra06G0031600 Salix brachista HOM05D000156 ORTHO05D002715 3.6e-10 68.9 117 40.2
Actinidia06277 Actinidia chinensis HOM05D000156 ORTHO05D002715 4.7e-10 68.6 69 55.1
Sed0022415 Sechium edule HOM05D000156 ORTHO05D002715 6.1e-10 68.2 102 41.2
Eucgr.J01207 Eucalyptus grandis HOM05D000156 ORTHO05D002715 8.0e-10 67.8 111 41.4
Gohir.D06G164600 Gossypium hirsutum HOM05D000156 ORTHO05D002715 8.0e-10 67.8 116 43.1
GSVIVG01033546001 Vitis vinifera HOM05D000156 ORTHO05D002715 8.0e-10 67.8 102 43.1
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 1.0e-09 67.4 100 46.0
Hma1.2p1_2420F.1_g321860 Hydrangea macrophylla HOM05D000156 ORTHO05D002715 1.0e-09 67.4 117 41.0
Potri.006G046000 Populus trichocarpa HOM05D000156 ORTHO05D002715 1.4e-09 67.0 117 38.5
MD02G1297300 Malus domestica HOM05D000156 ORTHO05D002715 2.3e-09 66.2 45 66.7
Gorai.010G192000 Gossypium raimondii HOM05D000156 ORTHO05D002715 3.1e-09 65.9 116 42.2
Lalb_Chr25g0282711 Lupinus albus HOM05D000156 ORTHO05D002715 3.1e-09 65.9 113 47.8
Potri.016G042700 Populus trichocarpa HOM05D000156 ORTHO05D002715 3.1e-09 65.9 117 36.8
Solyc01g088250.4 Solanum lycopersicum HOM05D000156 ORTHO05D002715 4.0e-09 65.5 142 31.7
Sopen01g035080 Solanum pennellii HOM05D000156 ORTHO05D002715 4.0e-09 65.5 69 46.4
CSS0025309 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D002715 6.8e-09 64.7 101 39.6
Cc06_g18300 Coffea canephora HOM05D000156 ORTHO05D002715 1.2e-08 63.9 99 42.4
Psat7g169560 Pisum sativum HOM05D000156 ORTHO05D002715 1.2e-08 63.9 118 39.8
TPR.G20585 Trifolium pratense HOM05D000156 ORTHO05D002715 1.2e-08 63.9 115 39.1
Dinv18685 Davidia involucrata HOM05D000156 ORTHO05D002715 1.5e-08 63.5 117 36.8
Sabra01G0015700 Salix brachista HOM05D000156 ORTHO05D002715 1.5e-08 63.5 122 37.7
ATR0721G167 Amborella trichopoda HOM05D000156 ORTHO05D002715 2.6e-08 62.8 122 40.2
Gohir.A06G158700 Gossypium hirsutum HOM05D000156 ORTHO05D002715 3.4e-08 62.4 116 40.5
Prupe.7G050600 Prunus persica HOM05D000156 ORTHO05D002715 3.4e-08 62.4 104 44.2
Manes.04G163400 Manihot esculenta HOM05D000156 ORTHO05D002715 4.4e-08 62.0 123 39.8
Medtr7g114700 Medicago truncatula HOM05D000156 ORTHO05D002715 5.8e-08 61.6 130 36.9
BolC9t60027H Brassica oleracea HOM05D000156 ORTHO05D002715 9.8e-08 60.8 81 44.4
Dinv39674 Davidia involucrata HOM05D000156 ORTHO05D002715 9.8e-08 60.8 99 39.4
C09p72900 Brassica napus HOM05D007779 ORTHO05D009863 1.3e-07 60.5 81 44.4
C09p72920 Brassica napus HOM05D007779 ORTHO05D009863 1.3e-07 60.5 81 44.4
BolC9t60025H Brassica oleracea HOM05D007779 ORTHO05D009863 1.3e-07 60.5 81 44.4
Aqoxy1G03235 Aquilegia oxysepala HOM05D000156 ORTHO05D002715 1.7e-07 60.1 94 38.3
Gohir.D13G012000 Gossypium hirsutum HOM05D000156 ORTHO05D002715 1.7e-07 60.1 92 43.5
Lj9C645T20 Lonicera japonica HOM05D000156 ORTHO05D002715 1.7e-07 60.1 117 35.0
A10p32170 Brassica napus HOM05D000156 ORTHO05D002715 2.2e-07 59.7 91 40.7
BraA10t45261Z Brassica rapa HOM05D000156 ORTHO05D002715 2.2e-07 59.7 91 40.7
Haze_19744 Corylus avellana HOM05D000156 ORTHO05D002715 2.2e-07 59.7 104 41.3
Nitab4.5_0000826g0150 Nicotiana tabacum HOM05D000156 ORTHO05D002715 2.9e-07 59.3 118 40.7
Atru.chr1.1185 Acer truncatum HOM05D000156 ORTHO05D002715 3.7e-07 58.9 117 35.9
CDE09G0713 Ceratophyllum demersum HOM05D000156 ORTHO05D002715 3.7e-07 58.9 78 42.3
Thhalv10013765m.g Eutrema salsugineum HOM05D000156 ORTHO05D002715 3.7e-07 58.9 91 40.7
Gorai.013G013200 Gossypium raimondii HOM05D000156 ORTHO05D002715 3.7e-07 58.9 92 42.4
HPP92_014157 Vanilla planifolia HOM05D000156 ORTHO05D002715 3.7e-07 58.9 54 57.4
Cfa016757 Carpinus fangiana HOM05D000156 ORTHO05D002715 4.9e-07 58.5 104 41.3
GSVIVG01033548001 Vitis vinifera HOM05D000156 ORTHO05D002715 4.9e-07 58.5 106 40.6
C09p72980 Brassica napus HOM05D000156 ORTHO05D002715 6.4e-07 58.2 91 40.7
BolC9t60033H Brassica oleracea HOM05D000156 ORTHO05D002715 6.4e-07 58.2 91 40.7
Ca_12265_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 8.3e-07 57.8 94 44.7
Ca_30549_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 8.3e-07 57.8 94 44.7
Cc02_g30120 Coffea canephora HOM05D000156 ORTHO05D002715 8.3e-07 57.8 82 43.9
Duzib128G0354 Durio zibethinus HOM05D000156 ORTHO05D002715 8.3e-07 57.8 118 35.6
CiPaw.09G041800 Carya illinoinensis HOM05D000156 ORTHO05D002715 1.1e-06 57.4 99 42.4
CDE08G0133 Ceratophyllum demersum HOM05D000156 ORTHO05D002715 1.4e-06 57.0 70 44.3
Gohir.A13G011300 Gossypium hirsutum HOM05D000156 ORTHO05D002715 1.4e-06 57.0 92 41.3
SalBow6G3254 Salvia bowleyana HOM05D000156 ORTHO05D002715 1.4e-06 57.0 115 37.4
SalBow6G3640 Salvia bowleyana HOM05D000156 ORTHO05D002715 1.4e-06 57.0 115 37.4
Lj1C1123G4 Lonicera japonica HOM05D000156 ORTHO05D002715 1.9e-06 56.6 73 46.6
Nitab4.5_0000082g0330 Nicotiana tabacum HOM05D000156 ORTHO05D002715 1.9e-06 56.6 99 35.4
MSTRG.19834 Avicennia marina HOM05D000156 ORTHO05D002715 2.4e-06 56.2 98 38.8
BcaB05g21791 Brassica carinata HOM05D000156 ORTHO05D002715 3.2e-06 55.8 92 41.3
BcaC03g12969 Brassica carinata HOM05D000156 ORTHO05D002715 3.2e-06 55.8 92 40.2
C02p01640 Brassica napus HOM05D000156 ORTHO05D002715 3.2e-06 55.8 92 40.2
BolC2t06129H Brassica oleracea HOM05D000156 ORTHO05D002715 3.2e-06 55.8 92 40.2
Glyma.10G106000 Glycine max HOM05D000156 ORTHO05D002715 4.1e-06 55.5 116 36.2
PGR044G2679 Punica granatum HOM05D000156 ORTHO05D002715 4.1e-06 55.5 90 46.7
SalBow5G3430 Salvia bowleyana HOM05D003022 ORTHO05D003363 4.1e-06 55.5 53 49.1
Carub.0006s0290 Capsella rubella HOM05D000156 ORTHO05D002715 5.4e-06 55.1 91 39.6
Duzib114G0688 Durio zibethinus HOM05D000156 ORTHO05D001430 5.4e-06 55.1 122 33.6
COL.COLO4_21310 Corchorus olitorius HOM05D000156 ORTHO05D002715 7.0e-06 54.7 118 36.4
CsaV3_5G024600 Cucumis sativus L. HOM05D000156 ORTHO05D002715 7.0e-06 54.7 48 54.2
Glyma.11G149200 Glycine max HOM05D000156 ORTHO05D002715 9.2e-06 54.3 68 47.1


User provided reference genes

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