Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 0.0e+00 1542.7 785 100.0
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 0.0e+00 1243.4 830 79.8
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 0.0e+00 1235.7 724 87.3
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 0.0e+00 1218.8 637 97.3
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1185.2 783 80.1
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 0.0e+00 1184.9 724 84.1
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 0.0e+00 1184.1 788 78.0
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1180.6 789 78.5
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1179.5 789 78.3
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1179.5 783 79.6
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 0.0e+00 1177.5 797 76.5
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 0.0e+00 1173.7 791 78.9
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 0.0e+00 1173.3 791 78.5
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 0.0e+00 1172.9 800 76.9
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 0.0e+00 1169.1 793 78.7
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 0.0e+00 1168.7 793 77.7
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 0.0e+00 1163.3 808 77.1
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 0.0e+00 1158.7 800 76.4
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1155.2 805 77.0
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 0.0e+00 1154.8 727 80.5
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 0.0e+00 1153.3 798 74.2
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1152.9 805 76.8
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 0.0e+00 1152.5 726 82.5
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1152.1 805 76.9
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 0.0e+00 1152.1 781 77.3
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 0.0e+00 1151.7 787 77.1
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1149.8 802 75.2
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 0.0e+00 1147.5 798 74.3
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 0.0e+00 1147.5 789 75.5
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 0.0e+00 1147.5 797 74.5
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1146.7 750 80.1
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1140.2 798 74.4
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1140.2 802 74.7
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 0.0e+00 1136.3 784 75.4
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1134.8 807 75.6
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1133.6 845 73.0
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 0.0e+00 1132.9 747 79.0
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1132.1 793 74.4
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1127.5 713 80.6
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1127.5 800 74.0
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 0.0e+00 1124.8 792 74.1
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 0.0e+00 1123.6 710 79.9
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1122.8 784 74.4
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1122.8 784 74.4
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1118.2 731 78.9
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1117.8 796 74.1
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1117.1 776 74.9
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1113.6 796 73.7
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1112.4 796 73.9
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 0.0e+00 1110.9 783 73.8
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1108.6 795 73.2
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1107.4 732 77.3
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 0.0e+00 1102.0 783 73.6
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 0.0e+00 1100.5 810 72.5
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 0.0e+00 1099.7 810 72.3
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 0.0e+00 1099.7 747 77.0
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 0.0e+00 1098.6 810 72.3
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 0.0e+00 1095.9 778 74.3
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 0.0e+00 1094.0 732 76.6
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 0.0e+00 1094.0 776 74.2
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 0.0e+00 1093.2 806 70.8
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 0.0e+00 1092.8 733 77.5
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 0.0e+00 1092.4 776 74.4
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 0.0e+00 1091.6 816 71.4
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 0.0e+00 1091.6 816 71.4
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1090.9 821 70.0
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 0.0e+00 1087.4 804 71.5
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 0.0e+00 1087.0 744 76.3
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 0.0e+00 1083.2 741 74.5
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 1.1e-311 1072.8 801 72.0
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 2.0e-309 1065.4 689 80.8
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 7.7e-309 1063.5 774 71.6
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.7e-308 1062.4 782 71.9
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 2.2e-308 1062.0 748 73.1
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 4.2e-307 1057.7 808 70.3
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 7.9e-306 1053.5 642 83.3
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 1.8e-302 1042.3 812 68.1
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 3.1e-302 1041.6 803 69.2
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 1.3e-300 1036.2 800 69.1
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 3.2e-299 1031.6 821 67.8
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 1.5e-296 1022.7 744 72.8
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 2.0e-296 1022.3 785 68.7
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 8.2e-295 1016.9 736 73.2
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 8.2e-295 1016.9 626 82.9
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 2.4e-294 1015.4 796 68.2
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 3.5e-293 1011.5 748 71.3
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 5.9e-293 1010.7 778 69.9
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 5.9e-293 1010.7 728 70.6
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 3.3e-288 995.0 726 69.7
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 1.2e-280 969.9 744 70.4
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 2.8e-279 965.3 777 66.0
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 1.1e-278 963.4 618 80.1
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 1.5e-275 953.0 783 65.6
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 4.0e-273 944.9 624 77.6
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 6.8e-273 944.1 809 63.5
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 1.5e-272 943.0 809 63.5
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 4.4e-272 941.4 686 74.2
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 4.9e-271 937.9 945 56.7
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 7.0e-270 934.1 787 65.7
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 1.6e-269 932.9 620 75.2
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.2e-261 906.7 666 72.5
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.3e-255 886.7 642 71.8
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 2.9e-255 885.6 618 73.5
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 2.0e-253 879.4 559 78.2
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 3.9e-252 875.2 594 75.6
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 8.6e-252 874.0 586 74.9
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 2.3e-249 865.9 550 76.9
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 2.0e-248 862.8 618 71.2
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 1.9e-246 856.3 589 73.9
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 1.0e-244 850.5 557 79.5
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 6.6e-244 847.8 626 69.0
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 3.1e-241 839.0 612 69.8
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 5.8e-240 834.7 755 59.2
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 1.9e-235 819.7 722 59.0
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 2.9e-231 805.8 799 59.4
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.1e-217 760.8 714 55.9
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 4.2e-198 695.7 615 57.7
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 2.7e-197 693.0 707 52.3
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 8.8e-188 661.4 564 60.5
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 8.2e-186 654.8 716 50.4
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 5.3e-185 652.1 373 86.3
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 5.3e-185 652.1 457 71.6
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 4.1e-177 625.9 384 81.0
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 5.7e-171 605.5 755 45.3
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.8e-169 600.5 446 67.7
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 5.3e-169 599.0 390 76.9
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 8.0e-165 585.1 579 58.4
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 9.5e-150 535.0 432 65.7
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 1.5e-147 527.7 409 69.2
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.2e-131 474.9 328 80.2
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 4.5e-107 393.3 335 61.8
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 1.3e-106 391.7 377 61.8
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 7.6e-99 365.9 452 49.6
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 1.8e-95 354.8 437 49.4
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 5.1e-95 353.2 221 76.9
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.4e-81 308.5 164 94.5
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 1.6e-80 305.1 235 71.5
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 5.3e-76 290.0 471 43.1
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 5.3e-76 290.0 471 43.1
QL02p050347 Quercus lobata HOM05D003588 ORTHO05D004252 1.5e-75 288.5 147 100.0
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 2.0e-62 245.0 201 64.7
Cfa007893 Carpinus fangiana HOM05D003588 ORTHO05D004252 7.4e-62 243.0 144 86.1
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 9.7e-62 242.7 158 76.6
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 4.8e-61 240.4 374 39.3
GSVIVG01030980001 Vitis vinifera HOM05D003588 ORTHO05D004252 5.3e-60 236.9 147 81.6
MSTRG.2778 Avicennia marina HOM05D003588 ORTHO05D004252 1.8e-55 221.9 155 74.2
RcHm_v2.0_Chr3g0494131 Rosa chinensis HOM05D003588 ORTHO05D004252 2.6e-54 218.0 148 79.1
MBI16_g38075_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 6.3e-53 213.4 162 68.5
Aqoxy3G00200 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 2.4e-52 211.5 149 76.5
ATR0681G242 Amborella trichopoda HOM05D003588 ORTHO05D004252 9.8e-46 189.5 167 62.9
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 1.1e-44 186.0 201 54.2
Lsat_1_v5_gn_4_155620 Lactuca sativa HOM05D003588 ORTHO05D004252 1.6e-43 182.2 145 63.4
HanXRQChr09g0262701 Helianthus annuus HOM05D003588 ORTHO05D004252 7.7e-43 179.9 150 63.3
AUR62009038 Chenopodium quinoa HOM05D003588 ORTHO05D004252 3.0e-39 167.9 124 71.8
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 3.5e-35 154.5 111 70.3
CDE02G3249 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 7.3e-33 146.7 120 61.7
Dinv34795 Davidia involucrata HOM05D003588 ORTHO05D004252 8.0e-32 143.3 80 87.5
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 2.0e-30 138.7 240 39.6
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 5.4e-28 130.6 83 78.3
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 2.7e-27 128.3 193 36.3
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 3.9e-26 124.4 104 55.8
CDE02G1293 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.9e-25 122.1 101 62.4
Lsat_1_v5_gn_9_96101 Lactuca sativa HOM05D003588 ORTHO05D004252 2.1e-24 118.6 93 71.0
Solyc02g086320.1 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.4e-23 115.9 94 69.1
SEGI_01406 Sequoiadendron giganteum HOM05D003588 ORTHO05D004252 3.1e-23 114.8 186 42.5
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 4.0e-23 114.4 123 56.9
BcaC03g18478 Brassica carinata HOM05D003588 ORTHO05D004252 1.4e-20 105.9 98 61.2
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 2.7e-19 101.7 95 55.8
Glyma.19G002000 Glycine max HOM05D003588 ORTHO05D004252 6.0e-19 100.5 100 57.0
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.1e-16 92.0 280 29.6
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.3e-13 82.8 71 53.5
MCO16G648 Micromonas commoda HOM05D003588 ORTHO05D004252 1.1e-09 69.7 149 28.9
Lsat_1_v5_gn_1_73461 Lactuca sativa HOM05D003588 ORTHO05D004252 1.4e-07 62.8 95 38.9


User provided reference genes

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