Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p010524 Quercus lobata HOM05D007049 ORTHO05D008896 6.1e-46 187.2 98 100.0
TWI12G1157 Tripterygium wilfordii HOM05D007049 ORTHO05D008896 3.9e-37 157.9 97 84.5
CiPaw.15G066500 Carya illinoinensis HOM05D007049 ORTHO05D008896 3.3e-36 154.8 98 80.6
RcHm_v2.0_Chr7g0212661 Rosa chinensis HOM05D007049 ORTHO05D008896 4.3e-36 154.5 96 82.3
Cfa019294 Carpinus fangiana HOM05D007049 ORTHO05D008896 2.2e-35 152.1 98 82.7
RcHm_v2.0_Chr7g0212551 Rosa chinensis HOM05D007049 ORTHO05D008896 2.8e-35 151.8 89 86.5
FAN18G1167 Fragaria x ananassa HOM05D007049 ORTHO05D008896 3.7e-35 151.4 96 82.3
FAN18G2563 Fragaria x ananassa HOM05D007049 ORTHO05D008896 3.7e-35 151.4 96 82.3
RcHm_v2.0_Chr7g0212501 Rosa chinensis HOM05D007049 ORTHO05D008896 3.7e-35 151.4 94 83.0
Prupe.8G009200 Prunus persica HOM05D007049 ORTHO05D008896 6.3e-35 150.6 96 80.2
Oeu023195.1 Olea europaea HOM05D007049 ORTHO05D008896 1.1e-34 149.8 92 83.7
COL.COLO4_06913 Corchorus olitorius HOM05D007049 ORTHO05D008896 2.4e-34 148.7 92 82.6
Thecc.08G177900 Theobroma cacao HOM05D007049 ORTHO05D008896 3.1e-34 148.3 97 81.4
Gohir.D13G119000 Gossypium hirsutum HOM05D007049 ORTHO05D008896 4.1e-34 147.9 92 83.7
Gorai.013G133400 Gossypium raimondii HOM05D007049 ORTHO05D008896 4.1e-34 147.9 92 83.7
MD10G1006000 Malus domestica HOM05D007049 ORTHO05D008896 4.1e-34 147.9 97 80.4
Cpa.g.sc19.285 Carica papaya HOM05D007049 ORTHO05D008896 5.3e-34 147.5 88 87.5
Gohir.A13G115800 Gossypium hirsutum HOM05D007049 ORTHO05D008896 5.3e-34 147.5 92 83.7
Nitab4.5_0000213g0160 Nicotiana tabacum HOM05D007049 ORTHO05D008896 5.3e-34 147.5 93 81.7
Hma1.2p1_0400F.1_g144580 Hydrangea macrophylla HOM05D007049 ORTHO05D008896 1.2e-33 146.4 93 82.8
Nitab4.5_0000398g0030 Nicotiana tabacum HOM05D007049 ORTHO05D008896 1.5e-33 146.0 93 80.6
Prupe.8G008400 Prunus persica HOM05D007049 ORTHO05D008896 1.5e-33 146.0 96 78.1
Solyc09g007070.1 Solanum lycopersicum HOM05D007049 ORTHO05D008896 2.6e-33 145.2 94 81.9
Sopen09g001930 Solanum pennellii HOM05D007049 ORTHO05D008896 2.6e-33 145.2 94 81.9
PGSC0003DMG401002024 Solanum tuberosum HOM05D007049 ORTHO05D008896 3.4e-33 144.8 94 80.9
Peaxi162Scf00078g00061 Petunia axillaris HOM05D007049 ORTHO05D008896 4.5e-33 144.4 93 78.5
CANSAT25G3584 Cannabis sativa HOM05D007049 ORTHO05D008896 5.9e-33 144.1 88 84.1
CAN.G4100.1 Capsicum annuum HOM05D007049 ORTHO05D008896 7.7e-33 143.7 94 80.9
Duzib177G1207 Durio zibethinus HOM05D007049 ORTHO05D008896 7.7e-33 143.7 97 78.4
Migut.C01376 Erythranthe guttata HOM05D007049 ORTHO05D008896 1.0e-32 143.3 93 79.6
Cc10_g08690 Coffea canephora HOM05D007049 ORTHO05D008896 1.3e-32 142.9 96 75.0
FAN08G2573 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.7e-32 142.5 87 83.9
CAN.G608.33 Capsicum annuum HOM05D007049 ORTHO05D008896 2.2e-32 142.1 92 81.5
Lalb_Chr03g0041921 Lupinus albus HOM05D007049 ORTHO05D008896 5.0e-32 141.0 92 80.4
Sabra01G0012500 Salix brachista HOM05D007049 ORTHO05D008896 5.0e-32 141.0 99 75.8
SalBow7G2968 Salvia bowleyana HOM05D007049 ORTHO05D008896 1.4e-31 139.4 91 76.9
TAR624G0348 Trochodendron aralioides HOM05D007049 ORTHO05D008896 1.4e-31 139.4 96 77.1
PGR042G0623 Punica granatum HOM05D007049 ORTHO05D008896 3.2e-31 138.3 91 76.9
CSS0000179 Camellia sinensis var. sinensis HOM05D007049 ORTHO05D008896 5.5e-31 137.5 93 75.3
Rhsim08G0116100 Rhododendron simsii HOM05D007049 ORTHO05D008896 9.4e-31 136.7 98 74.5
RcHm_v2.0_Chr6g0251481 Rosa chinensis HOM05D007049 ORTHO05D008896 9.4e-31 136.7 90 78.9
TAR624G1340 Trochodendron aralioides HOM05D007049 ORTHO05D008896 9.4e-31 136.7 89 79.8
DCAR_006853 Daucus carota HOM05D007049 ORTHO05D008896 1.2e-30 136.3 92 78.3
DCAR_017595 Daucus carota HOM05D007049 ORTHO05D008896 2.1e-30 135.6 92 77.2
Eucgr.F02581 Eucalyptus grandis HOM05D007049 ORTHO05D008896 2.1e-30 135.6 97 71.1
Sed0002937 Sechium edule HOM05D007049 ORTHO05D008896 2.7e-30 135.2 98 72.4
Ca_24471_v3 Cicer arietinum L. HOM05D007049 ORTHO05D008896 3.6e-30 134.8 91 74.7
Nn5g27287 Nelumbo nucifera HOM05D007049 ORTHO05D008896 3.6e-30 134.8 96 71.9
FAN04G0010 Fragaria x ananassa HOM05D007049 ORTHO05D008896 4.7e-30 134.4 80 86.2
Sabra01G0012700 Salix brachista HOM05D007049 ORTHO05D008896 7.9e-30 133.7 86 80.2
ECA248G1776 Erigeron canadensis HOM05D007049 ORTHO05D008896 1.0e-29 133.3 96 72.9
Glyma.11G013800 Glycine max HOM05D007049 ORTHO05D008896 1.0e-29 133.3 91 76.9
Phvul.002G036400 Phaseolus vulgaris HOM05D007049 ORTHO05D008896 1.8e-29 132.5 93 74.2
LjContig00222g0016429 Lotus japonicus HOM05D007049 ORTHO05D008896 3.0e-29 131.7 85 80.0
Psat7g180160 Pisum sativum HOM05D007049 ORTHO05D008896 3.0e-29 131.7 92 75.0
VMungo1215G2220 Vigna mungo HOM05D007049 ORTHO05D008896 3.0e-29 131.7 93 74.2
Ah.05g168610 Amaranthus hybridus HOM05D007049 ORTHO05D008896 3.9e-29 131.3 96 70.8
arahy.Tifrunner.gnm1.ann1.6H88WF Arachis hypogaea HOM05D007049 ORTHO05D008896 3.9e-29 131.3 86 77.9
Ciclev10023082m.g Citrus clementina HOM05D007049 ORTHO05D008896 3.9e-29 131.3 89 76.4
MBI13_g15314_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 6.7e-29 130.6 87 77.0
MBI13_g30327_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 6.7e-29 130.6 87 77.0
THA.LOC104824284 Tarenaya hassleriana HOM05D007049 ORTHO05D008896 6.7e-29 130.6 87 78.2
CARHR134570 Cardamine hirsuta HOM05D007049 ORTHO05D008896 8.8e-29 130.2 88 77.3
Carub.0004s2178 Capsella rubella HOM05D007049 ORTHO05D008896 1.5e-28 129.4 93 77.4
TPR.G37942 Trifolium pratense HOM05D007049 ORTHO05D008896 1.5e-28 129.4 88 73.9
Psat2g187280 Pisum sativum HOM05D007049 ORTHO05D008896 2.0e-28 129.0 92 73.9
Sc20g0003280 Simmondsia chinensis HOM05D007049 ORTHO05D008896 2.0e-28 129.0 80 81.2
Aa31LG5G19930 Aethionema arabicum HOM05D007049 ORTHO05D008896 2.6e-28 128.6 86 79.1
Psat7g180120 Pisum sativum HOM05D007049 ORTHO05D008896 3.3e-28 128.3 92 72.8
AL4G37190 Arabidopsis lyrata HOM05D007049 ORTHO05D008896 4.4e-28 127.9 93 76.3
EL10Ac7g16149 Beta vulgaris HOM05D007049 ORTHO05D008896 5.7e-28 127.5 88 73.9
HanXRQChr10g0289041 Helianthus annuus HOM05D007049 ORTHO05D008896 1.3e-27 126.3 92 70.7
Thhalv10017481m.g Eutrema salsugineum HOM05D007049 ORTHO05D008896 1.7e-27 125.9 93 73.1
arahy.Tifrunner.gnm1.ann1.CT79FY Arachis hypogaea HOM05D007049 ORTHO05D008896 2.2e-27 125.6 82 78.0
BcaC02g07431 Brassica carinata HOM05D007049 ORTHO05D008896 2.2e-27 125.6 89 75.3
C04p67530 Brassica napus HOM05D007049 ORTHO05D008896 2.2e-27 125.6 89 75.3
MELO3C022175.2 Cucumis melo HOM05D007049 ORTHO05D008896 2.2e-27 125.6 91 72.5
Psat7g180080 Pisum sativum HOM05D007049 ORTHO05D008896 2.8e-27 125.2 92 70.7
CsaV3_5G039970 Cucumis sativus L. HOM05D007049 ORTHO05D008896 3.7e-27 124.8 91 72.5
Prupe.8G008800 Prunus persica HOM05D007049 ORTHO05D008896 3.7e-27 124.8 78 80.8
AT2G39725 Arabidopsis thaliana HOM05D007049 ORTHO05D008896 4.8e-27 124.4 93 75.3
Medtr5g008340 Medicago truncatula HOM05D007049 ORTHO05D008896 6.3e-27 124.0 88 73.9
AUR62022356 Chenopodium quinoa HOM05D007049 ORTHO05D008896 8.2e-27 123.6 95 66.3
AUR62034352 Chenopodium quinoa HOM05D007049 ORTHO05D008896 8.2e-27 123.6 95 66.3
ClCG08G001090 Citrullus lanatus HOM05D007049 ORTHO05D008896 1.1e-26 123.2 81 79.0
Os08g0278600 Oryza sativa ssp. japonica HOM05D007049 ORTHO05D008896 2.4e-26 122.1 86 67.4
BcaB06g29104 Brassica carinata HOM05D007049 ORTHO05D008896 3.1e-26 121.7 90 74.4
BolC4t28250H Brassica oleracea HOM05D007049 ORTHO05D008896 3.1e-26 121.7 90 74.4
unitig_46.g17984 Utricularia gibba HOM05D007049 ORTHO05D008896 3.1e-26 121.7 93 73.1
A04p30310 Brassica napus HOM05D007049 ORTHO05D008896 4.1e-26 121.3 90 73.3
HanXRQChr04g0114811 Helianthus annuus HOM05D007049 ORTHO05D008896 4.1e-26 121.3 92 67.4
Psat7g195680 Pisum sativum HOM05D007049 ORTHO05D008896 4.1e-26 121.3 92 71.7
BraA04t18476Z Brassica rapa HOM05D007049 ORTHO05D008896 7.0e-26 120.6 90 73.3
Sp4g21990 Schrenkiella parvula HOM05D007049 ORTHO05D008896 7.0e-26 120.6 92 72.8
FAN13G1882 Fragaria x ananassa HOM05D007049 ORTHO05D008896 4.5e-25 117.9 69 85.5
Aqoxy3G02546 Aquilegia oxysepala HOM05D007049 ORTHO05D008896 3.2e-23 111.7 86 65.1
PSO017G7166 Papaver somniferum HOM05D007049 ORTHO05D008896 4.2e-23 111.3 74 77.0
SGA_v2.0_scaffold118G32610 Striga asiatica HOM05D007049 ORTHO05D008896 2.1e-22 109.0 72 77.8
Zm00001eb026180 Zea mays HOM05D007049 ORTHO05D008896 3.6e-22 108.2 84 63.1
Prupe.8G009100 Prunus persica HOM05D007049 ORTHO05D008896 1.0e-21 106.7 88 67.0
Manes.01G011600 Manihot esculenta HOM05D007049 ORTHO05D008896 4.0e-21 104.8 67 80.6
Potri.001G018100 Populus trichocarpa HOM05D007049 ORTHO05D008896 2.0e-20 102.4 69 79.7
HPP92_017350 Vanilla planifolia HOM05D007049 ORTHO05D008896 2.6e-20 102.1 82 61.0
ATR0057G071 Amborella trichopoda HOM05D007049 ORTHO05D008896 4.8e-19 97.8 86 55.8
SHI21473 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-18 95.5 72 66.7
MD05G1008200 Malus domestica HOM05D007049 ORTHO05D008896 9.1e-18 93.6 66 75.8
SMO353G0203 Selaginella moellendorffii HOM05D007049 ORTHO05D008896 3.5e-17 91.7 76 61.8
Pp3c4_6780 Physcomitrium patens HOM05D007049 ORTHO05D008896 5.0e-16 87.8 77 63.6
Mapoly0004s0187 Marchantia polymorpha HOM05D007049 ORTHO05D008896 4.7e-14 81.3 72 56.9
MCO05G024 Micromonas commoda HOM05D007049 ORTHO05D008896 8.5e-08 60.5 82 39.0
Lsat_1_v5_gn_1_45401 Lactuca sativa HOM05D007049 ORTHO05D008896 1.1e-07 60.1 46 63.0
Solyc04g077110.3 Solanum lycopersicum HOM05D007049 ORTHO05D008896 3.6e-06 55.1 44 68.2
Sopen00g005060 Solanum pennellii HOM05D007049 ORTHO05D008896 8.0e-06 53.9 43 67.4


User provided reference genes

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