Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p010011 Quercus lobata HOM05D007133 ORTHO05D008954 7.2e-30 133.3 68 100.0
Phvul.001G156100 Phaseolus vulgaris HOM05D007133 ORTHO05D008954 2.9e-15 84.7 48 85.4
Rhsim01G0126300 Rhododendron simsii HOM05D007133 ORTHO05D008954 6.5e-15 83.6 76 59.2
Glyma.09G226900 Glycine max HOM05D007133 ORTHO05D008954 8.5e-15 83.2 48 83.3
Glyma.12G009900 Glycine max HOM05D007133 ORTHO05D008954 8.5e-15 83.2 48 83.3
Nn7g36332 Nelumbo nucifera HOM05D007133 ORTHO05D008954 1.1e-14 82.8 48 81.2
Phvul.011G010800 Phaseolus vulgaris HOM05D007133 ORTHO05D008954 1.1e-14 82.8 48 83.3
Manes.10G136200 Manihot esculenta HOM05D007133 ORTHO05D008954 1.5e-14 82.4 48 83.3
Cc02_g28790 Coffea canephora HOM05D007133 ORTHO05D008954 1.9e-14 82.0 48 81.2
Dinv03122 Davidia involucrata HOM05D007133 ORTHO05D008954 1.9e-14 82.0 48 85.4
Dinv09308 Davidia involucrata HOM05D007133 ORTHO05D008954 1.9e-14 82.0 48 85.4
Oeu027371.1 Olea europaea HOM05D007133 ORTHO05D008954 1.9e-14 82.0 48 83.3
MBI19_g09240_MAGBIO Magnolia biondii HOM05D007133 ORTHO05D008954 2.5e-14 81.6 48 79.2
Hund26515 Selenicereus undatus HOM05D007133 ORTHO05D008954 4.2e-14 80.9 48 77.1
THA.LOC104817576 Tarenaya hassleriana HOM05D007133 ORTHO05D008954 4.2e-14 80.9 48 75.0
vmacro21138 Vaccinium macrocarpon HOM05D007133 ORTHO05D008954 7.2e-14 80.1 48 81.2
Ciclev10033166m.g Citrus clementina HOM05D007133 ORTHO05D008954 9.4e-14 79.7 48 79.2
arahy.Tifrunner.gnm1.ann1.1B9UE2 Arachis hypogaea HOM05D007133 ORTHO05D008954 1.6e-13 79.0 48 79.2
arahy.Tifrunner.gnm1.ann1.PZX0PK Arachis hypogaea HOM05D007133 ORTHO05D008954 1.6e-13 79.0 48 79.2
CiPaw.14G003100 Carya illinoinensis HOM05D007133 ORTHO05D008954 1.6e-13 79.0 48 79.2
MELO3C023583.2 Cucumis melo HOM05D007133 ORTHO05D008954 2.1e-13 78.6 48 77.1
Hma1.2p1_0685F.1_g203210 Hydrangea macrophylla HOM05D007133 ORTHO05D008954 2.7e-13 78.2 48 79.2
Lj3g0009786 Lotus japonicus HOM05D007133 ORTHO05D008954 2.7e-13 78.2 48 79.2
Atru.chr11.2512 Acer truncatum HOM05D007133 ORTHO05D008954 3.6e-13 77.8 48 79.2
Haze_03143 Corylus avellana HOM05D007133 ORTHO05D008954 3.6e-13 77.8 48 79.2
Haze_03146 Corylus avellana HOM05D007133 ORTHO05D008954 3.6e-13 77.8 48 79.2
Sed0015487 Sechium edule HOM05D007133 ORTHO05D008954 3.6e-13 77.8 48 72.9
SGA_v2.0_scaffold5G02955 Striga asiatica HOM05D007133 ORTHO05D008954 3.6e-13 77.8 48 77.1
Actinidia21538 Actinidia chinensis HOM05D007133 ORTHO05D008954 4.7e-13 77.4 48 79.2
CsaV3_7G030730 Cucumis sativus L. HOM05D007133 ORTHO05D008954 4.7e-13 77.4 48 77.1
Eucgr.G03322 Eucalyptus grandis HOM05D007133 ORTHO05D008954 4.7e-13 77.4 48 77.1
CSS0001581 Camellia sinensis var. sinensis HOM05D007133 ORTHO05D008954 6.1e-13 77.0 48 79.2
Psat7g197280 Pisum sativum HOM05D007133 ORTHO05D008954 6.1e-13 77.0 50 72.0
Sc10g0000360 Simmondsia chinensis HOM05D007133 ORTHO05D008954 6.1e-13 77.0 48 77.1
TWI53G1532 Tripterygium wilfordii HOM05D007133 ORTHO05D008954 6.1e-13 77.0 48 75.0
TAR633G1269 Trochodendron aralioides HOM05D007133 ORTHO05D008954 6.1e-13 77.0 48 72.9
GSVIVG01032212001 Vitis vinifera HOM05D007133 ORTHO05D008954 8.0e-13 76.6 48 77.1
Ah.10g038590 Amaranthus hybridus HOM05D007133 ORTHO05D008954 1.0e-12 76.3 48 75.0
Potri.009G056800 Populus trichocarpa HOM05D007133 ORTHO05D008954 1.0e-12 76.3 48 79.2
Potri.001G262000 Populus trichocarpa HOM05D007133 ORTHO05D008954 1.4e-12 75.9 48 77.1
Medtr0512s0010 Medicago truncatula HOM05D007133 ORTHO05D008954 1.8e-12 75.5 48 77.1
HanXRQChr06g0179721 Helianthus annuus HOM05D007133 ORTHO05D008954 2.3e-12 75.1 48 77.1
Lsat_1_v5_gn_1_104961 Lactuca sativa HOM05D007133 ORTHO05D008954 2.3e-12 75.1 48 77.1
Lalb_Chr04g0263851 Lupinus albus HOM05D007133 ORTHO05D008954 4.0e-12 74.3 48 75.0
SalBow6G3002 Salvia bowleyana HOM05D007133 ORTHO05D008954 4.0e-12 74.3 49 75.5
Duzib268G0834 Durio zibethinus HOM05D007133 ORTHO05D008954 5.2e-12 73.9 48 72.9
PGR031G3629 Punica granatum HOM05D007133 ORTHO05D008954 5.2e-12 73.9 48 72.9
TWI09G1631 Tripterygium wilfordii HOM05D007133 ORTHO05D008954 5.2e-12 73.9 48 70.8
Duzib133G0944 Durio zibethinus HOM05D007133 ORTHO05D008954 6.8e-12 73.6 66 60.6
ECA248G0684 Erigeron canadensis HOM05D007133 ORTHO05D008954 6.8e-12 73.6 48 77.1
FvH4_7g01820 Fragaria vesca HOM05D007133 ORTHO05D008954 6.8e-12 73.6 48 75.0
FAN01G1667 Fragaria x ananassa HOM05D007133 ORTHO05D008954 6.8e-12 73.6 48 75.0
Gohir.A12G100700 Gossypium hirsutum HOM05D007133 ORTHO05D008954 6.8e-12 73.6 48 72.9
Gohir.D12G103551 Gossypium hirsutum HOM05D007133 ORTHO05D008954 6.8e-12 73.6 48 72.9
Gorai.008G112700 Gossypium raimondii HOM05D007133 ORTHO05D008954 6.8e-12 73.6 48 72.9
RcHm_v2.0_Chr1g0318451 Rosa chinensis HOM05D007133 ORTHO05D008954 6.8e-12 73.6 48 75.0
AL5G32580 Arabidopsis lyrata HOM05D007133 ORTHO05D008954 1.5e-11 72.4 48 72.9
BcaB01g00452 Brassica carinata HOM05D007133 ORTHO05D008954 1.5e-11 72.4 48 70.8
C08p27290 Brassica napus HOM05D007133 ORTHO05D008954 1.5e-11 72.4 48 70.8
BolC8t50346H Brassica oleracea HOM05D007133 ORTHO05D008954 1.5e-11 72.4 48 70.8
Migut.N01798 Erythranthe guttata HOM05D007133 ORTHO05D008954 1.5e-11 72.4 48 70.8
Peaxi162Scf01270g00118 Petunia axillaris HOM05D007133 ORTHO05D008954 1.5e-11 72.4 48 75.0
Thecc.01G406600 Theobroma cacao HOM05D007133 ORTHO05D008954 1.5e-11 72.4 48 70.8
Aqoxy1G00141 Aquilegia oxysepala HOM05D007133 ORTHO05D008954 2.0e-11 72.0 48 72.9
AT3G52040 Arabidopsis thaliana HOM05D007133 ORTHO05D008954 2.0e-11 72.0 48 72.9
AUR62023097 Chenopodium quinoa HOM05D007133 ORTHO05D008954 2.0e-11 72.0 48 72.9
TPR.G30180 Trifolium pratense HOM05D007133 ORTHO05D008954 2.0e-11 72.0 48 72.9
MD07G1024700 Malus domestica HOM05D007133 ORTHO05D008954 2.6e-11 71.6 48 70.8
Carub.0005s1836 Capsella rubella HOM05D007133 ORTHO05D008954 3.4e-11 71.2 48 72.9
Prupe.2G024400 Prunus persica HOM05D007133 ORTHO05D008954 3.4e-11 71.2 48 66.7
Sabra09G0041600 Salix brachista HOM05D007133 ORTHO05D008954 4.4e-11 70.9 48 72.9
A09p45100 Brassica napus HOM05D007133 ORTHO05D008954 5.7e-11 70.5 48 68.8
BraA09t39971Z Brassica rapa HOM05D007133 ORTHO05D008954 5.7e-11 70.5 48 68.8
COL.COLO4_12337 Corchorus olitorius HOM05D007133 ORTHO05D008954 5.7e-11 70.5 48 70.8
Lalb_Chr25g0282521 Lupinus albus HOM05D007133 ORTHO05D008954 5.7e-11 70.5 48 70.8
MD02G1300200 Malus domestica HOM05D007133 ORTHO05D008954 5.7e-11 70.5 48 68.8
EL10Ac2g04374 Beta vulgaris HOM05D007133 ORTHO05D008954 7.5e-11 70.1 48 70.8
Solyc01g087880.3 Solanum lycopersicum HOM05D007133 ORTHO05D008954 7.5e-11 70.1 48 79.2
Sopen01g034810 Solanum pennellii HOM05D007133 ORTHO05D008954 7.5e-11 70.1 48 79.2
BcaC06g33021 Brassica carinata HOM05D007133 ORTHO05D008954 9.8e-11 69.7 48 70.8
Ca_26645_v3 Cicer arietinum L. HOM05D007133 ORTHO05D008954 9.8e-11 69.7 48 70.8
PSO063G0957 Papaver somniferum HOM05D007133 ORTHO05D008954 2.2e-10 68.6 48 66.7
PSO170G5856 Papaver somniferum HOM05D007133 ORTHO05D008954 2.2e-10 68.6 48 66.7
Aa31LG10G7080 Aethionema arabicum HOM05D007133 ORTHO05D008954 2.8e-10 68.2 48 70.8
CDE08G1151 Ceratophyllum demersum HOM05D007133 ORTHO05D008954 2.8e-10 68.2 48 72.9
PGSC0003DMG400006836 Solanum tuberosum HOM05D007133 ORTHO05D008954 2.8e-10 68.2 48 77.1
Nitab4.5_0008942g0020 Nicotiana tabacum HOM05D007133 ORTHO05D008954 3.7e-10 67.8 48 77.1
Os01g0271700 Oryza sativa ssp. japonica HOM05D007133 ORTHO05D008954 3.7e-10 67.8 52 63.5
Thhalv10010861m.g Eutrema salsugineum HOM05D007133 ORTHO05D008954 4.8e-10 67.4 48 70.8
Zm00001eb332910 Zea mays HOM05D007133 ORTHO05D008954 4.8e-10 67.4 48 66.7
CANSAT80G0888 Cannabis sativa HOM05D007133 ORTHO05D008954 6.3e-10 67.0 48 66.7
BcaC06g33378 Brassica carinata HOM05D007133 ORTHO05D008954 8.3e-10 66.6 48 66.7
C07p46740 Brassica napus HOM05D007133 ORTHO05D008954 8.3e-10 66.6 48 66.7
BolC7t45192H Brassica oleracea HOM05D007133 ORTHO05D008954 8.3e-10 66.6 48 66.7
Eucgr.G03325 Eucalyptus grandis HOM05D007133 ORTHO05D008954 1.1e-09 66.2 48 68.8
unitig_8.g3622 Utricularia gibba HOM05D007133 ORTHO05D008954 1.1e-09 66.2 48 70.8
A03p48620 Brassica napus HOM05D007133 ORTHO05D008954 3.1e-09 64.7 48 64.6
BraA03t13967Z Brassica rapa HOM05D007133 ORTHO05D008954 3.1e-09 64.7 48 64.6
CARHR161670 Cardamine hirsuta HOM05D007133 ORTHO05D008954 5.9e-08 60.5 48 68.8
Cc00_g26940 Coffea canephora HOM05D007133 ORTHO05D008954 5.9e-08 60.5 54 57.4
FAN10G0509 Fragaria x ananassa HOM05D007133 ORTHO05D008954 7.7e-08 60.1 40 72.5
ClCG09G004410 Citrullus lanatus HOM05D007133 ORTHO05D008954 1.0e-07 59.7 83 43.4
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 1.1e-06 56.2 48 64.6
Nitab4.5_0001244g0090 Nicotiana tabacum HOM05D007133 ORTHO05D008954 7.2e-06 53.5 74 50.0


User provided reference genes

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