Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 1.4e-133 479.6 233 100.0
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 1.0e-67 260.8 135 96.3
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 3.8e-62 242.3 135 87.4
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 3.8e-62 242.3 135 85.2
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 3.8e-62 242.3 135 85.9
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 8.4e-62 241.1 135 84.4
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 1.4e-61 240.4 135 84.4
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 1.4e-61 240.4 135 86.7
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 2.4e-61 239.6 135 84.4
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 2.4e-61 239.6 135 84.4
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 2.4e-61 239.6 135 83.7
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 2.4e-61 239.6 135 86.7
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 3.2e-61 239.2 135 85.2
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 4.2e-61 238.8 135 85.2
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 4.2e-61 238.8 135 85.2
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 7.1e-61 238.0 134 85.1
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 7.1e-61 238.0 135 83.7
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 9.3e-61 237.7 135 83.7
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 9.3e-61 237.7 135 85.9
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 1.2e-60 237.3 135 83.7
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 1.6e-60 236.9 135 83.0
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 1.6e-60 236.9 135 85.9
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 1.6e-60 236.9 135 83.0
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 2.7e-60 236.1 135 85.2
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 2.7e-60 236.1 135 84.4
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 2.7e-60 236.1 135 84.4
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 3.5e-60 235.7 135 87.4
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 3.5e-60 235.7 135 82.2
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 3.5e-60 235.7 135 83.0
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 3.5e-60 235.7 135 84.4
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 6.0e-60 235.0 134 85.8
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 7.9e-60 234.6 135 83.7
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 1.0e-59 234.2 135 83.0
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 1.0e-59 234.2 135 85.2
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 1.3e-59 233.8 135 83.7
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 1.8e-59 233.4 135 83.7
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 1.8e-59 233.4 135 83.0
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 2.3e-59 233.0 135 83.7
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 3.0e-59 232.6 135 83.7
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 3.0e-59 232.6 135 83.0
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 3.9e-59 232.3 135 82.2
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 5.1e-59 231.9 135 82.2
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 1.1e-58 230.7 135 83.7
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 1.1e-58 230.7 135 83.7
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 1.1e-58 230.7 135 82.2
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.5e-58 230.3 135 83.0
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 1.9e-58 229.9 135 80.0
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 2.5e-58 229.6 135 82.2
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 3.3e-58 229.2 134 82.8
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 4.3e-58 228.8 135 80.7
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 9.6e-58 227.6 135 80.0
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 9.6e-58 227.6 135 80.7
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 1.3e-57 227.3 135 80.0
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 2.8e-57 226.1 135 78.5
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 2.8e-57 226.1 135 79.3
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 2.8e-57 226.1 135 83.0
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 3.7e-57 225.7 135 80.0
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 4.8e-57 225.3 135 80.0
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.8e-57 225.3 135 80.0
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.8e-57 225.3 135 80.0
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.8e-57 225.3 135 80.0
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.8e-57 225.3 135 80.0
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 6.2e-57 224.9 135 78.5
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 8.1e-57 224.6 135 78.5
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 8.1e-57 224.6 135 78.5
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 8.1e-57 224.6 135 78.5
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 8.1e-57 224.6 135 78.5
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 1.8e-56 223.4 135 78.5
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 2.4e-56 223.0 135 77.8
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 3.1e-56 222.6 135 77.0
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 4.0e-56 222.2 135 77.8
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 5.3e-56 221.9 135 77.8
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 5.3e-56 221.9 135 77.0
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 6.9e-56 221.5 135 77.8
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 1.2e-55 220.7 135 76.3
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 1.2e-55 220.7 135 76.3
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 1.2e-55 220.7 135 76.3
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 1.2e-55 220.7 135 76.3
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 2.9e-54 216.1 135 76.3
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 3.8e-54 215.7 135 77.8
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 1.1e-53 214.2 135 75.6
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 1.4e-53 213.8 135 71.9
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 1.9e-53 213.4 135 74.1
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 3.2e-53 212.6 135 72.6
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 3.2e-53 212.6 184 62.0
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 5.5e-53 211.8 135 74.8
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.8e-51 206.8 126 78.6
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 1.8e-51 206.8 133 72.9
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 2.3e-51 206.5 135 72.6
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 2.3e-51 206.5 135 72.6
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 5.1e-51 205.3 135 74.1
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 5.1e-51 205.3 135 74.1
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 7.4e-50 201.4 135 74.1
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 2.4e-48 196.4 135 72.6
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 9.0e-48 194.5 115 82.6
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 9.0e-48 194.5 151 68.2
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 2.6e-47 193.0 120 76.7
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 3.4e-47 192.6 151 66.9
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 5.8e-47 191.8 135 68.1
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 5.8e-47 191.8 135 68.1
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.2e-44 184.1 101 86.1
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 5.3e-40 168.7 89 87.6
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 5.3e-40 168.7 89 87.6
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 6.5e-38 161.8 108 72.2
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 2.5e-34 149.8 134 53.0
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.7e-33 147.1 134 53.0
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 3.1e-32 142.9 135 57.0
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 1.2e-31 141.0 135 48.9
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 5.9e-31 138.7 135 47.4
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 1.4e-29 134.0 114 62.3
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 7.2e-29 131.7 158 44.9
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 2.6e-26 123.2 144 44.4
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 1.3e-25 120.9 99 57.6
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 1.0e-22 111.3 76 78.9
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 2.9e-22 109.8 122 40.2
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 4.2e-21 105.9 127 42.5
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 3.0e-19 99.8 157 35.0
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 9.1e-16 88.2 61 70.5
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 1.6e-15 87.4 46 80.4
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 1.6e-15 87.4 46 80.4
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 1.4e-11 74.3 49 73.5
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 3.1e-08 63.2 41 70.7
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 8.5e-06 55.1 41 65.9


User provided reference genes

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