Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 0.0e+00 1577.8 850 100.0
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 4.4e-286 988.0 836 67.8
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 9.3e-260 900.6 834 63.3
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 2.0e-185 653.7 855 50.2
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 1.7e-173 614.0 850 48.6
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 2.0e-169 600.5 854 47.8
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 3.4e-169 599.7 925 45.2
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 3.5e-166 589.7 850 47.3
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 6.0e-166 589.0 852 46.8
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 7.8e-166 588.6 852 46.8
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 2.5e-164 583.6 834 47.4
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.1e-162 578.2 873 46.0
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 1.8e-162 577.4 852 45.9
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 3.8e-160 569.7 846 47.3
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 2.4e-159 567.0 858 46.5
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.6e-158 564.3 852 45.7
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 2.1e-158 563.9 840 45.0
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 1.6e-155 554.3 842 44.3
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 3.4e-153 546.6 854 44.8
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 7.1e-151 538.9 800 46.6
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 7.4e-148 528.9 847 46.9
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 2.3e-141 507.3 842 43.3
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 8.4e-136 488.8 861 43.0
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 3.5e-134 483.4 883 41.8
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 2.3e-133 480.7 847 39.9
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 1.1e-132 478.4 889 41.6
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 4.3e-132 476.5 792 43.9
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 8.2e-131 472.2 683 47.0
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 9.0e-130 468.8 890 40.2
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 5.9e-129 466.1 856 41.0
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 3.8e-128 463.4 849 40.9
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 5.0e-128 463.0 857 40.8
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 1.8e-125 454.5 838 40.1
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 6.7e-125 452.6 664 45.2
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 1.9e-124 451.1 855 40.9
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 4.3e-124 449.9 715 44.6
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 2.6e-121 440.7 919 38.2
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 2.2e-120 437.6 866 39.6
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 7.2e-119 432.6 1025 35.1
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 3.9e-117 426.8 665 44.5
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 9.1e-114 415.6 564 47.5
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 1.1e-111 408.7 894 37.7
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 1.4e-111 408.3 878 38.2
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 2.5e-111 407.5 889 36.8
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 3.6e-110 403.7 851 37.6
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 7.9e-110 402.5 851 37.3
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 6.7e-109 399.4 883 36.8
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 5.7e-108 396.4 858 37.9
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 7.4e-108 396.0 872 37.8
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 2.6e-105 387.5 637 45.7
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 1.2e-102 378.6 884 37.2
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 1.4e-101 375.2 959 34.8
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 8.8e-101 372.5 833 35.5
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 2.2e-99 367.9 862 35.7
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 6.3e-99 366.3 891 36.0
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 4.1e-98 363.6 856 37.0
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 3.5e-97 360.5 911 35.2
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 4.5e-97 360.1 827 35.2
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 4.7e-94 350.1 660 39.8
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 4.7e-94 350.1 869 35.1
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 3.0e-93 347.4 863 34.1
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 1.3e-91 342.0 844 36.0
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 2.4e-90 337.8 856 34.7
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 7.0e-90 336.3 910 33.0
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 5.9e-89 333.2 864 33.6
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 6.5e-88 329.7 521 40.5
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 1.1e-87 328.9 819 34.2
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 1.5e-87 328.6 807 34.4
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 2.5e-87 327.8 855 33.5
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 3.2e-87 327.4 568 41.2
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 7.2e-87 326.2 824 33.1
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 3.1e-82 310.8 804 34.2
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 4.5e-81 307.0 571 37.3
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 7.8e-81 306.2 806 34.4
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 7.8e-81 306.2 806 34.4
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 1.3e-80 305.4 822 33.9
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 2.9e-80 304.3 777 33.5
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 1.9e-79 301.6 907 33.0
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 2.1e-78 298.1 842 32.9
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 3.6e-78 297.4 810 32.8
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 3.6e-78 297.4 916 31.1
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 1.0e-77 295.8 777 33.8
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 1.0e-77 295.8 788 33.5
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 1.4e-77 295.4 945 30.4
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 2.6e-76 291.2 293 57.7
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 5.7e-76 290.0 831 34.2
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 7.5e-76 289.7 822 32.5
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 1.7e-75 288.5 768 34.0
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 2.2e-75 288.1 804 34.5
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 2.9e-75 287.7 763 34.2
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 5.4e-74 283.5 882 31.2
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 2.5e-71 274.6 857 31.4
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 3.3e-71 274.2 553 37.4
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 2.4e-66 258.1 613 36.2
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 1.1e-61 242.7 719 32.8
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 1.2e-57 229.2 783 30.8
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 8.9e-53 213.0 644 34.8
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 2.7e-49 201.4 649 31.4
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 1.0e-48 199.5 667 31.3
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 3.0e-48 198.0 866 26.8
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 6.6e-48 196.8 657 30.6
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 1.1e-45 189.5 789 28.6
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 4.0e-45 187.6 675 30.2
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.1e-42 179.5 170 56.5
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 1.4e-42 179.1 700 30.1
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 8.7e-40 169.9 588 30.4
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 2.1e-38 165.2 646 31.0
Dinv43435 Davidia involucrata HOM05D001393 ORTHO05D007477 1.4e-21 109.4 277 33.9
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 4.5e-20 104.4 153 41.8
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 4.2e-18 97.8 214 37.9
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 6.9e-13 80.5 390 24.9
TAR623G1737 Trochodendron aralioides HOM05D001393 ORTHO05D007477 2.1e-09 68.9 325 26.2
SEGI_24281 Sequoiadendron giganteum HOM05D000890 ORTHO05D007477 1.8e-08 65.9 362 23.8
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 5.1e-08 64.3 340 23.5
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 5.1e-08 64.3 340 23.5


User provided reference genes

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