Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 1.0e-63 246.5 119 100.0
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 1.0e-63 246.5 119 100.0
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 3.5e-40 168.3 119 71.4
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 2.3e-39 165.6 117 72.6
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 5.1e-39 164.5 120 73.3
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 1.9e-38 162.5 120 72.5
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 8.7e-31 137.1 125 58.4
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 2.5e-30 135.6 122 55.7
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 3.3e-30 135.2 118 63.6
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.3e-29 133.3 122 59.0
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 3.7e-29 131.7 121 54.5
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 4.8e-29 131.3 122 59.0
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 2.4e-28 129.0 119 58.8
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 4.1e-28 128.3 125 56.0
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 5.8e-27 124.4 99 65.7
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 1.3e-26 123.2 120 56.7
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 3.8e-26 121.7 121 52.9
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 8.4e-26 120.6 110 61.8
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 1.4e-25 119.8 123 56.9
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 7.2e-25 117.5 123 54.5
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 7.2e-25 117.5 119 54.6
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 1.2e-24 116.7 125 55.2
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 1.6e-24 116.3 123 48.8
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 2.7e-24 115.5 120 55.0
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 2.7e-24 115.5 122 51.6
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 2.3e-23 112.5 121 52.9
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 1.5e-22 109.8 119 49.6
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 1.9e-22 109.4 121 49.6
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 1.9e-22 109.4 123 48.0
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 4.3e-22 108.2 119 51.3
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 4.3e-22 108.2 119 49.6
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 5.7e-22 107.8 121 51.2
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 7.4e-22 107.5 119 51.3
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 9.7e-22 107.1 121 51.2
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 9.7e-22 107.1 121 51.2
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 1.3e-21 106.7 121 46.3
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 2.2e-21 105.9 125 48.0
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 1.1e-20 103.6 126 49.2
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 1.8e-20 102.8 126 48.4
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 3.1e-20 102.1 121 47.1
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 5.3e-20 101.3 90 53.3
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 1.2e-19 100.1 93 54.8
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 2.6e-19 99.0 119 47.9
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 2.9e-18 95.5 71 63.4
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 3.8e-18 95.1 125 48.0
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 6.5e-18 94.4 91 57.1
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 2.1e-16 89.4 120 45.8
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 3.6e-16 88.6 128 43.8
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 7.9e-16 87.4 128 43.0
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 3.0e-15 85.5 138 41.3
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 3.0e-15 85.5 54 70.4
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 3.0e-15 85.5 98 53.1
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 3.0e-15 85.5 54 70.4
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 8.8e-15 84.0 105 43.8
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 1.1e-14 83.6 119 46.2
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 4.3e-14 81.6 123 46.3
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 9.7e-14 80.5 114 43.0
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 1.3e-13 80.1 48 75.0
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 4.8e-13 78.2 111 45.0
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 8.2e-13 77.4 48 72.9
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 1.1e-12 77.0 114 45.6
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.8e-12 76.3 126 40.5
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.8e-12 76.3 126 40.5
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 5.3e-12 74.7 121 38.8
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 5.3e-12 74.7 121 38.8
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 9.1e-12 73.9 126 39.7
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 1.2e-11 73.6 121 38.8
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 1.3e-10 70.1 126 38.9
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 1.3e-10 70.1 123 39.0
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 1.3e-10 70.1 123 39.0
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 5.0e-10 68.2 85 45.9
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 8.5e-10 67.4 81 45.7
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 8.5e-10 67.4 81 45.7
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 1.4e-09 66.6 115 38.3
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 9.4e-09 63.9 118 38.1
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 2.1e-08 62.8 125 37.6
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 3.6e-08 62.0 49 61.2
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 6.1e-08 61.2 106 37.7
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 3.0e-07 58.9 123 36.6
AagrBONN_evm.TU.Sc2ySwM_228.4962 Anthoceros agrestis HOM05D025110 ORTHO05D009967 1.1e-06 57.0 46 56.5
Pp3c24_5190 Physcomitrium patens HOM05D025110 ORTHO05D009967 7.4e-06 54.3 76 40.8


User provided reference genes

Program Settings