Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 3.8e-91 338.2 175 100.0
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 2.3e-64 249.2 163 84.0
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 1.1e-50 203.8 162 66.7
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 1.4e-45 186.8 161 64.0
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 1.8e-45 186.4 162 61.7
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 7.0e-45 184.5 161 62.1
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 1.2e-44 183.7 161 60.9
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 1.6e-44 183.3 163 62.0
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.6e-44 183.3 162 62.3
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 2.0e-44 183.0 162 59.9
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 3.5e-44 182.2 161 62.7
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 3.5e-44 182.2 162 61.1
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 4.5e-44 181.8 161 60.2
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 4.5e-44 181.8 161 59.0
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 1.3e-43 180.3 161 60.2
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.7e-43 179.9 161 62.7
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 2.3e-43 179.5 160 60.6
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.9e-43 179.1 162 59.9
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 2.9e-43 179.1 162 61.1
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 3.8e-43 178.7 162 59.3
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 5.0e-43 178.3 161 60.9
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 8.6e-43 177.6 162 59.3
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 8.6e-43 177.6 162 59.3
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 8.6e-43 177.6 161 59.6
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 1.1e-42 177.2 161 59.6
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.1e-42 177.2 162 58.6
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 1.5e-42 176.8 162 59.3
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.5e-42 176.8 162 59.3
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.5e-42 176.8 161 61.5
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 1.9e-42 176.4 161 57.1
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.9e-42 176.4 161 61.5
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 1.9e-42 176.4 167 56.9
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 2.5e-42 176.0 161 59.6
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 3.3e-42 175.6 161 61.5
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 4.2e-42 175.3 161 57.8
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 4.2e-42 175.3 161 58.4
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 7.2e-42 174.5 164 59.1
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 7.2e-42 174.5 162 58.6
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 7.2e-42 174.5 176 56.8
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 7.2e-42 174.5 161 60.9
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 7.2e-42 174.5 160 60.6
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 9.5e-42 174.1 160 59.4
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 9.5e-42 174.1 161 58.4
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 9.5e-42 174.1 161 55.3
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 9.5e-42 174.1 160 60.0
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 1.2e-41 173.7 160 60.0
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 2.1e-41 172.9 162 58.6
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 3.6e-41 172.2 161 56.5
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 6.1e-41 171.4 161 55.9
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 8.0e-41 171.0 161 56.5
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 8.0e-41 171.0 160 56.2
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 8.0e-41 171.0 161 55.3
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.8e-40 169.9 166 55.4
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 1.8e-40 169.9 162 57.4
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 1.8e-40 169.9 161 59.0
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 1.8e-40 169.9 161 55.9
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 2.3e-40 169.5 146 63.0
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 3.0e-40 169.1 162 56.8
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 5.2e-40 168.3 161 54.7
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 5.2e-40 168.3 161 56.5
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 6.8e-40 167.9 162 54.3
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 1.2e-39 167.2 163 55.8
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 1.2e-39 167.2 163 55.8
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.2e-39 167.2 162 54.9
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 1.5e-39 166.8 161 55.9
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 2.0e-39 166.4 162 56.8
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.0e-39 166.4 161 53.4
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 4.4e-39 165.2 160 56.2
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 4.4e-39 165.2 161 57.8
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 4.4e-39 165.2 161 56.5
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 5.7e-39 164.9 160 53.1
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 9.8e-39 164.1 160 54.4
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 9.8e-39 164.1 161 55.3
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 9.8e-39 164.1 161 53.4
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 2.2e-38 162.9 162 55.6
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 2.9e-38 162.5 162 55.6
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 2.9e-38 162.5 161 54.0
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 3.7e-38 162.2 161 55.9
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 3.7e-38 162.2 146 58.9
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 4.9e-38 161.8 160 57.5
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 4.9e-38 161.8 162 56.8
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 6.4e-38 161.4 161 54.0
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 6.4e-38 161.4 161 54.0
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 8.3e-38 161.0 161 54.0
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 8.3e-38 161.0 162 53.7
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 8.3e-38 161.0 149 61.1
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.4e-37 160.2 162 53.1
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.4e-37 159.5 161 53.4
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 4.1e-37 158.7 160 50.6
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 4.1e-37 158.7 162 53.1
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 5.4e-37 158.3 160 52.5
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 9.2e-37 157.5 162 53.7
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.6e-36 156.8 161 52.8
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 2.0e-36 156.4 160 56.9
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 3.5e-36 155.6 143 59.4
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 1.3e-35 153.7 162 49.4
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 2.9e-35 152.5 160 51.9
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 3.9e-35 152.1 161 50.9
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 8.6e-35 151.0 162 51.9
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 1.9e-34 149.8 160 49.4
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 1.9e-34 149.8 161 49.7
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 2.5e-34 149.4 149 53.0
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 7.3e-34 147.9 160 50.0
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 7.3e-34 147.9 146 52.7
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 9.5e-34 147.5 161 52.2
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 9.5e-34 147.5 146 52.1
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 1.6e-33 146.7 147 58.5
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 2.8e-33 146.0 160 49.4
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 2.8e-33 146.0 160 48.8
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 2.8e-33 146.0 160 49.4
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 2.8e-33 146.0 160 48.8
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 2.8e-33 146.0 162 51.2
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 4.7e-33 145.2 160 48.8
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 4.7e-33 145.2 160 48.8
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 4.7e-33 145.2 160 49.4
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 4.7e-33 145.2 160 49.4
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 4.7e-33 145.2 160 46.9
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 4.7e-33 145.2 160 48.1
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 4.7e-33 145.2 160 48.8
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 4.7e-33 145.2 162 49.4
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 8.0e-33 144.4 160 48.8
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 8.0e-33 144.4 160 48.8
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 8.0e-33 144.4 158 53.2
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 1.0e-32 144.1 146 56.2
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 1.8e-32 143.3 160 48.1
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 3.1e-32 142.5 160 48.1
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 3.1e-32 142.5 161 47.2
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 4.0e-32 142.1 160 46.2
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 4.0e-32 142.1 160 47.5
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 4.0e-32 142.1 160 48.1
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 5.2e-32 141.7 160 46.9
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 2.6e-31 139.4 158 50.6
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 4.4e-31 138.7 163 47.9
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.3e-30 137.1 151 49.7
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 1.3e-30 137.1 146 53.4
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 2.2e-30 136.3 146 50.0
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 2.2e-30 136.3 283 35.3
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.2e-30 136.3 163 47.2
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 8.3e-30 134.4 160 48.1
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.2e-29 132.5 163 45.4
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 9.2e-29 131.0 142 50.7
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 3.5e-28 129.0 158 44.9
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 4.6e-28 128.6 166 47.0
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 7.8e-28 127.9 228 39.5
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 1.1e-26 124.0 162 44.4
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 7.3e-26 121.3 160 42.5
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 3.6e-25 119.0 137 46.7
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.1e-24 117.5 80 70.0
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.1e-24 117.5 96 57.3
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.8e-24 116.7 160 40.0
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 3.1e-24 115.9 160 40.0
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 8.9e-24 114.4 80 68.8
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 4.9e-22 108.6 151 42.4
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 1.1e-21 107.5 164 39.0
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.4e-21 107.1 188 39.4
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 5.6e-18 95.1 60 73.3
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.6e-17 92.4 70 65.7
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.1e-16 90.9 151 40.4
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.1e-16 90.9 70 62.9
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.4e-16 90.5 70 62.9
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 5.2e-16 88.6 143 35.7
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.2e-16 88.6 70 60.0
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 6.8e-16 88.2 61 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 1.3e-14 84.0 123 41.5
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 5.4e-13 78.6 149 28.9
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 8.6e-11 71.2 142 32.4
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 3.6e-09 65.9 160 31.9
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.4e-08 63.9 88 35.2
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 2.4e-08 63.2 74 54.1
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 8.9e-08 61.2 37 81.1
arahy.Tifrunner.gnm1.ann1.4Z64RL Arachis hypogaea HOM05D003972 ORTHO05D082339 4.4e-07 58.9 58 51.7


User provided reference genes

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