Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 1.4e-57 226.1 115 100.0
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 7.6e-48 193.7 99 98.0
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.4e-25 119.0 67 85.1
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 5.9e-24 114.4 67 82.1
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 4.2e-22 108.2 64 76.6
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 9.3e-22 107.1 64 75.0
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 9.3e-22 107.1 65 78.5
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 9.3e-22 107.1 64 73.4
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.7e-21 105.5 68 75.0
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.7e-21 105.5 68 75.0
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.0e-20 103.6 68 73.5
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 3.0e-20 102.1 64 70.3
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 3.0e-20 102.1 67 64.2
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 3.9e-20 101.7 65 73.8
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.1e-20 101.3 65 73.8
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.1e-20 101.3 65 73.8
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 6.7e-20 100.9 65 66.2
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.1e-19 100.1 65 70.8
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.1e-19 100.1 64 73.4
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.1e-19 100.1 65 72.3
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.1e-19 100.1 64 71.9
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 1.1e-19 100.1 65 72.3
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.9e-19 99.4 65 70.8
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.9e-19 99.4 65 72.3
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.5e-19 99.0 65 70.8
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 3.3e-19 98.6 64 71.9
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 3.3e-19 98.6 68 66.2
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 3.3e-19 98.6 65 63.1
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 5.7e-19 97.8 65 70.8
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.7e-19 97.8 64 71.9
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 5.7e-19 97.8 64 70.3
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 7.4e-19 97.4 64 68.8
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 9.7e-19 97.1 64 67.2
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 1.6e-18 96.3 64 65.6
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 1.6e-18 96.3 64 65.6
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 1.6e-18 96.3 64 65.6
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 2.2e-18 95.9 65 72.3
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 3.1e-17 92.0 63 61.9
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 3.1e-17 92.0 66 65.2
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 4.1e-17 91.7 65 69.2
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 5.3e-17 91.3 63 63.5
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 6.9e-17 90.9 63 68.3
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 9.0e-17 90.5 67 64.2
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.2e-16 90.1 64 67.2
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.2e-16 90.1 64 67.2
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.6e-16 89.0 64 65.6
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 5.9e-16 87.8 65 60.0
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.9e-16 87.8 65 64.6
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 7.7e-16 87.4 65 58.5
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 7.7e-16 87.4 65 58.5
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 7.7e-16 87.4 65 58.5
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 1.3e-15 86.7 68 57.4
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.3e-15 86.7 62 62.9
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 1.3e-15 86.7 64 60.9
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 2.9e-15 85.5 65 56.9
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 2.9e-15 85.5 68 54.4
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 5.0e-15 84.7 65 56.9
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 6.5e-15 84.3 65 56.9
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 6.5e-15 84.3 67 56.7
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 6.5e-15 84.3 65 56.9
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 8.5e-15 84.0 58 67.2
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 8.5e-15 84.0 58 67.2
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 1.4e-14 83.2 68 54.4
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 1.4e-14 83.2 65 55.4
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 2.5e-14 82.4 68 52.9
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 2.5e-14 82.4 62 61.3
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.5e-14 82.4 57 66.7
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.5e-14 82.4 57 66.7
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 3.2e-14 82.0 62 56.5
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 3.2e-14 82.0 62 61.3
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 3.2e-14 82.0 62 62.9
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 3.2e-14 82.0 62 61.3
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 3.2e-14 82.0 62 62.9
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 4.2e-14 81.6 57 68.4
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 4.2e-14 81.6 83 50.6
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 4.2e-14 81.6 57 66.7
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.2e-14 81.6 56 67.9
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 5.5e-14 81.3 62 62.9
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 7.2e-14 80.9 64 62.5
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 7.2e-14 80.9 61 62.3
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 7.2e-14 80.9 57 64.9
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 9.4e-14 80.5 62 61.3
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 1.6e-13 79.7 57 57.9
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 1.6e-13 79.7 57 57.9
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 2.1e-13 79.3 57 68.4
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 2.1e-13 79.3 64 57.8
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.1e-13 79.3 68 51.5
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 2.1e-13 79.3 57 66.7
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 2.7e-13 79.0 65 55.4
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.7e-13 79.0 97 43.3
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 4.6e-13 78.2 62 58.1
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.6e-13 78.2 97 43.3
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.0e-12 77.0 58 56.9
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 1.4e-12 76.6 65 53.8
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 1.4e-12 76.6 65 53.8
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 1.4e-12 76.6 65 53.8
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.4e-12 76.6 62 61.3
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 1.4e-12 76.6 58 58.6
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.4e-12 76.6 62 58.1
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 1.8e-12 76.3 62 61.3
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.3e-12 75.9 62 59.7
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 2.3e-12 75.9 62 54.8
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 3.0e-12 75.5 65 52.3
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 3.0e-12 75.5 65 52.3
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 3.0e-12 75.5 50 72.0
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 3.0e-12 75.5 57 61.4
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.9e-12 75.1 57 59.6
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 5.1e-12 74.7 57 63.2
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 6.7e-12 74.3 60 53.3
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.7e-12 74.3 56 64.3
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.7e-12 74.3 56 64.3
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.7e-12 74.3 60 60.0
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 8.8e-12 73.9 66 54.5
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 8.8e-12 73.9 57 63.2
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 8.8e-12 73.9 67 55.2
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 8.8e-12 73.9 63 52.4
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 8.8e-12 73.9 63 52.4
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-11 73.2 62 58.1
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-11 73.2 62 58.1
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 2.0e-11 72.8 72 55.6
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 2.5e-11 72.4 58 56.9
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 3.3e-11 72.0 62 58.1
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 5.7e-11 71.2 51 62.7
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 5.7e-11 71.2 57 57.9
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 5.7e-11 71.2 65 47.7
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 7.4e-11 70.9 66 51.5
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 7.4e-11 70.9 85 48.2
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 9.7e-11 70.5 62 54.8
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 9.7e-11 70.5 62 54.8
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 1.3e-10 70.1 62 53.2
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 2.2e-10 69.3 62 51.6
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.2e-10 69.3 62 56.5
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 2.8e-10 68.9 65 52.3
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 3.7e-10 68.6 62 50.0
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 8.2e-10 67.4 57 50.9
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 8.2e-10 67.4 57 50.9
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 5.3e-09 64.7 51 60.8
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 6.9e-09 64.3 62 50.0
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 6.9e-09 64.3 64 50.0
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 6.9e-09 64.3 62 45.2
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 6.9e-09 64.3 57 50.9
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 9.1e-09 63.9 52 59.6
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 1.2e-08 63.5 52 57.7
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.5e-08 63.2 52 59.6
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 1.5e-08 63.2 70 45.7
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 2.0e-08 62.8 59 49.2
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 3.4e-08 62.0 65 47.7
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.5e-08 61.6 62 41.9
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 4.5e-08 61.6 58 51.7
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 7.7e-08 60.8 62 45.2
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.0e-07 60.5 59 54.2
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.7e-07 59.7 62 51.6
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 1.7e-07 59.7 58 53.4
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.2e-07 59.3 58 50.0
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 2.9e-07 58.9 58 53.4
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 2.9e-07 58.9 58 53.4
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 3.8e-07 58.5 41 73.2
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 6.5e-07 57.8 58 53.4
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 1.1e-06 57.0 58 51.7
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.4e-06 56.6 50 52.0
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 1.9e-06 56.2 58 53.4
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.5e-06 55.8 55 49.1
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 2.5e-06 55.8 58 53.4
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 4.2e-06 55.1 61 47.5
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 4.2e-06 55.1 58 53.4


User provided reference genes

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