Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p007380 Quercus lobata HOM05D026683 ORTHO05D030522 5.0e-56 220.7 100 100.0
QL04p006877 Quercus lobata HOM05D026683 ORTHO05D030522 1.5e-55 219.2 100 99.0
QL08p029940 Quercus lobata HOM05D026683 ORTHO05D030522 2.6e-12 75.5 32 93.8
QL11p023758 Quercus lobata HOM05D026683 ORTHO05D030522 1.2e-09 66.6 44 65.9
Atru.chr8.2478 Acer truncatum HOM05D000349 ORTHO05D001782 2.3e-08 62.4 36 80.6
CSS0004801 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 2.3e-08 62.4 36 80.6
CSS0006610 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 2.3e-08 62.4 36 80.6
CsaV3_5G037840 Cucumis sativus L. HOM05D000349 ORTHO05D001782 2.3e-08 62.4 40 75.0
Dinv33714 Davidia involucrata HOM05D000349 ORTHO05D001782 2.3e-08 62.4 33 87.9
unitig_32.g11779 Utricularia gibba HOM05D000349 ORTHO05D001782 5.1e-08 61.2 41 70.7
unitig_748.g8619 Utricularia gibba HOM05D000349 ORTHO05D001782 5.1e-08 61.2 41 70.7
HanXRQChr09g0265651 Helianthus annuus HOM05D000349 ORTHO05D001782 8.7e-08 60.5 53 58.5
HanXRQChr14g0449361 Helianthus annuus HOM05D000349 ORTHO05D001782 8.7e-08 60.5 36 77.8
Lsat_1_v5_gn_6_3280 Lactuca sativa HOM05D000349 ORTHO05D001782 8.7e-08 60.5 35 80.0
Actinidia06066 Actinidia chinensis HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Actinidia36030 Actinidia chinensis HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
ATR0709G022 Amborella trichopoda HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Aqoxy3G00794 Aquilegia oxysepala HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
AL6G25890 Arabidopsis lyrata HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
AT5G15070 Arabidopsis thaliana HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
arahy.Tifrunner.gnm1.ann1.1VPR90 Arachis hypogaea HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
arahy.Tifrunner.gnm1.ann1.5C5NI4 Arachis hypogaea HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
arahy.Tifrunner.gnm1.ann1.EK04TZ Arachis hypogaea HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
arahy.Tifrunner.gnm1.ann1.F3F8HA Arachis hypogaea HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
arahy.Tifrunner.gnm1.ann1.P37ZHI Arachis hypogaea HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
MSTRG.3314 Avicennia marina HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
BcaB01g05086 Brassica carinata HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
BcaB08g36931 Brassica carinata HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
BcaC04g18992 Brassica carinata HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
A03p06920 Brassica napus HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
A10p23790 Brassica napus HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
C03p07910 Brassica napus HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
C09p62100 Brassica napus HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
BolC3t13288H Brassica oleracea HOM05D000349 ORTHO05D001782 1.1e-07 60.1 33 81.8
BolC9t59048H Brassica oleracea HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
BraA10t44442Z Brassica rapa HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
CANSAT64G1270 Cannabis sativa HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Carub.0006s1324 Capsella rubella HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
CAN.G61.36 Capsicum annuum HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
CARHR198250 Cardamine hirsuta HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Cpa.g.sc14.46 Carica papaya HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Cfa007504 Carpinus fangiana HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
CiPaw.03G030700 Carya illinoinensis HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
CiPaw.04G020400 Carya illinoinensis HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
CDE02G3185 Ceratophyllum demersum HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
CDE06G1135 Ceratophyllum demersum HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Ca_04097_v3 Cicer arietinum L. HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
ClCG09G018430 Citrullus lanatus HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Ciclev10010963m.g Citrus clementina HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Cc07_g02940 Coffea canephora HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Haze_14589 Corylus avellana HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
MELO3C021971.2 Cucumis melo HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Dinv34993 Davidia involucrata HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Duzib147G1141 Durio zibethinus HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
ECA232G0316 Erigeron canadensis HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
ECA238G2719 Erigeron canadensis HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Migut.H00886 Erythranthe guttata HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Migut.K01337 Erythranthe guttata HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Eucgr.I01909 Eucalyptus grandis HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Eucgr.J02137 Eucalyptus grandis HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Thhalv10012536m.g Eutrema salsugineum HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
FvH4_6g49380 Fragaria vesca HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
FAN02G2291 Fragaria x ananassa HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
FAN05G2522 Fragaria x ananassa HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Glyma.18G255000 Glycine max HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Gorai.012G055700 Gossypium raimondii HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
HanXRQChr02g0056461 Helianthus annuus HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Lsat_1_v5_gn_2_88460 Lactuca sativa HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Lsat_1_v5_gn_4_179941 Lactuca sativa HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Lj7A402T46 Lonicera japonica HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Lj1g0013791 Lotus japonicus HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Lj2g0003395 Lotus japonicus HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
MBI01_g01234_MAGBIO Magnolia biondii HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Manes.15G175400 Manihot esculenta HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Medtr6g011290 Medicago truncatula HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Medtr7g009060 Medicago truncatula HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Nn3g17106 Nelumbo nucifera HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Nitab4.5_0003226g0010 Nicotiana tabacum HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
PSO478G0063 Papaver somniferum HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Phvul.004G025600 Phaseolus vulgaris HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Phvul.008G044100 Phaseolus vulgaris HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Psat3g194960 Pisum sativum HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Potri.004G129900 Populus trichocarpa HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Potri.017G076400 Populus trichocarpa HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Prupe.3G272600 Prunus persica HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
PGR142G2597 Punica granatum HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
PGR142G4016 Punica granatum HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
RhsimUnG0054600 Rhododendron simsii HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
RcHm_v2.0_Chr2g0169241 Rosa chinensis HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Sabra17G0068200 Salix brachista HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
SalBow1G6919 Salvia bowleyana HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
SHI24098 Sapria himalayana HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Sp6g29000 Schrenkiella parvula HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Sed0019591 Sechium edule HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Solyc03g058960.1 Solanum lycopersicum HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Sopen03g012920 Solanum pennellii HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
SGA_v2.0_scaffold205G41756 Striga asiatica HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
SGA_v2.0_scaffold224G42952 Striga asiatica HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
THA.LOC104822374 Tarenaya hassleriana HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Thecc.04G073400 Theobroma cacao HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
TPR.G4339 Trifolium pratense HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
TAR629G2859 Trochodendron aralioides HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
vmacro05748 Vaccinium macrocarpon HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
HPP92_012247 Vanilla planifolia HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
HPP92_019652 Vanilla planifolia HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
VMungo0464G1194 Vigna mungo HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
VMungo1383G3294 Vigna mungo HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
GSVIVG01032598001 Vitis vinifera HOM05D000349 ORTHO05D001782 1.1e-07 60.1 36 77.8
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 1.9e-07 59.3 32 84.4
Peaxi162Scf00700g00725 Petunia axillaris HOM05D000349 ORTHO05D001782 1.9e-07 59.3 32 84.4
EL10Ac2g02930 Beta vulgaris HOM05D000349 ORTHO05D001782 2.5e-07 58.9 36 75.0
CAN.G206.106 Capsicum annuum HOM05D000349 ORTHO05D001782 2.5e-07 58.9 36 75.0
AUR62031653 Chenopodium quinoa HOM05D000349 ORTHO05D001782 2.5e-07 58.9 36 75.0
Hund13247 Selenicereus undatus HOM05D000349 ORTHO05D001782 2.5e-07 58.9 36 75.0
Hund15653 Selenicereus undatus HOM05D000349 ORTHO05D001782 2.5e-07 58.9 36 75.0
Solyc02g087620.3 Solanum lycopersicum HOM05D000349 ORTHO05D001782 2.5e-07 58.9 36 75.0
Sopen02g032370 Solanum pennellii HOM05D000349 ORTHO05D001782 2.5e-07 58.9 36 75.0
PGSC0003DMG403001309 Solanum tuberosum HOM05D000349 ORTHO05D001782 2.5e-07 58.9 36 75.0
TWI60G0717 Tripterygium wilfordii HOM05D000349 ORTHO05D001782 2.5e-07 58.9 36 75.0
BraA03t10013Z Brassica rapa HOM05D000349 ORTHO05D001782 3.3e-07 58.5 31 87.1
FAN14G3781 Fragaria x ananassa HOM05D000349 ORTHO05D001782 3.3e-07 58.5 31 87.1
Nitab4.5_0000002g0490 Nicotiana tabacum HOM05D000349 ORTHO05D001782 3.3e-07 58.5 31 87.1
MSTRG.15490 Avicennia marina HOM05D000349 ORTHO05D001782 4.3e-07 58.2 36 75.0
AUR62018295 Chenopodium quinoa HOM05D000349 ORTHO05D001782 4.3e-07 58.2 36 75.0
Glyma.19G019100 Glycine max HOM05D000349 ORTHO05D001782 4.3e-07 58.2 36 75.0
Psat1g076120 Pisum sativum HOM05D000349 ORTHO05D001782 4.3e-07 58.2 36 75.0
SMO164G0156 Selaginella moellendorffii HOM05D000349 ORTHO05D001782 4.3e-07 58.2 36 75.0
SEGI_14163 Sequoiadendron giganteum HOM05D000349 ORTHO05D001782 4.3e-07 58.2 36 75.0
PGR083G1519 Punica granatum HOM05D000349 ORTHO05D001782 5.7e-07 57.8 36 75.0
Os03g0689100 Oryza sativa ssp. japonica HOM05D000349 ORTHO05D001782 7.4e-07 57.4 36 75.0
Peaxi162Scf00129g00546 Petunia axillaris HOM05D000349 ORTHO05D001782 7.4e-07 57.4 36 72.2
Zm00001eb053420 Zea mays HOM05D000349 ORTHO05D001782 7.4e-07 57.4 36 75.0
Aa31LG11G14480 Aethionema arabicum HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
AL3G10930 Arabidopsis lyrata HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
AT3G01310 Arabidopsis thaliana HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
BcaB04g21424 Brassica carinata HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
BcaC01g04519 Brassica carinata HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
BcaC09g47646 Brassica carinata HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
BcaC09g47647 Brassica carinata HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
A03p32580 Brassica napus HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
BNapus_Darmor_BZH_scaffold_119p00140 Brassica napus HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
BNapus_Darmor_BZH_scaffold_133p00160 Brassica napus HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
BNapus_Darmor_BZH_scaffold_97p00290 Brassica napus HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
C03p39660 Brassica napus HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
BolC1t05950H Brassica oleracea HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
BolC3t16231H Brassica oleracea HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
BraA01t04654Z Brassica rapa HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
BraA03t12427Z Brassica rapa HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
Carub.0003s0084 Capsella rubella HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
CARHR075720 Cardamine hirsuta HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
COL.COLO4_25206 Corchorus olitorius HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
Glyma.09G241100 Glycine max HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
Gohir.A05G364500 Gossypium hirsutum HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
Gohir.A09G020400 Gossypium hirsutum HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
Gohir.D09G020000 Gossypium hirsutum HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
Gorai.006G023400 Gossypium raimondii HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
HanXRQChr05g0135691 Helianthus annuus HOM05D000349 ORTHO05D001782 9.6e-07 57.0 42 66.7
Lalb_Chr02g0159481 Lupinus albus HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
Lalb_Chr06g0175521 Lupinus albus HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
Lalb_Chr21g0318991 Lupinus albus HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
Sc10g0003860 Simmondsia chinensis HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
THA.LOC104821051 Tarenaya hassleriana HOM05D000349 ORTHO05D001782 9.6e-07 57.0 36 75.0
CSS0003275 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 1.3e-06 56.6 36 75.0
CSS0031648 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 1.3e-06 56.6 36 75.0
DCAR_011167 Daucus carota HOM05D000349 ORTHO05D001782 1.3e-06 56.6 36 75.0
Gohir.D04G050300 Gossypium hirsutum HOM05D000349 ORTHO05D001782 1.3e-06 56.6 36 75.0
Nn4g23012 Nelumbo nucifera HOM05D000349 ORTHO05D001782 1.3e-06 56.6 36 75.0
TPR.G4268 Trifolium pratense HOM05D000349 ORTHO05D001782 1.3e-06 56.6 36 75.0
Aa31LG5G12310 Aethionema arabicum HOM05D000349 ORTHO05D001782 1.6e-06 56.2 36 75.0
Thhalv10019952m.g Eutrema salsugineum HOM05D000349 ORTHO05D001782 1.6e-06 56.2 36 75.0
Glyma.13G065500 Glycine max HOM05D000349 ORTHO05D001782 1.6e-06 56.2 36 75.0
Sp3g00780 Schrenkiella parvula HOM05D000349 ORTHO05D001782 1.6e-06 56.2 36 75.0
TAR622G1370 Trochodendron aralioides HOM05D000349 ORTHO05D001782 1.6e-06 56.2 36 75.0
Nitab4.5_0000564g0370 Nicotiana tabacum HOM05D000349 ORTHO05D001782 2.1e-06 55.8 36 72.2
Nitab4.5_0002265g0230 Nicotiana tabacum HOM05D000349 ORTHO05D001782 2.1e-06 55.8 36 72.2
QL03p059614 Quercus lobata HOM05D000001 ORTHO05D000648 2.1e-06 55.8 41 63.4
AagrBONN_evm.TU.Sc2ySwM_117.3168 Anthoceros agrestis HOM05D000349 ORTHO05D001782 3.7e-06 55.1 36 72.2
Mapoly0013s0108 Marchantia polymorpha HOM05D000349 ORTHO05D001782 3.7e-06 55.1 36 72.2
Pp3c12_13560 Physcomitrium patens HOM05D000349 ORTHO05D001782 3.7e-06 55.1 36 72.2
Pp3c3_34460 Physcomitrium patens HOM05D000349 ORTHO05D001782 3.7e-06 55.1 36 72.2
TWI32G0660 Tripterygium wilfordii HOM05D000349 ORTHO05D001782 3.7e-06 55.1 36 72.2
CBR_g24415 Chara braunii HOM05D000349 ORTHO05D001782 6.2e-06 54.3 36 69.4
Os01g0777700 Oryza sativa ssp. japonica HOM05D000349 ORTHO05D001782 6.2e-06 54.3 36 72.2


User provided reference genes

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