Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p007226 Quercus lobata HOM05D003146 ORTHO05D001819 3.2e-96 355.1 188 100.0
QL04p007240 Quercus lobata HOM05D003146 ORTHO05D001819 2.2e-81 305.8 188 85.6
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 1.4e-43 180.3 187 53.5
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 1.3e-33 147.1 170 47.6
QL08p052685 Quercus lobata HOM05D003146 ORTHO05D001819 1.5e-32 143.7 195 45.1
QL08p052692 Quercus lobata HOM05D003146 ORTHO05D001819 1.5e-32 143.7 195 45.1
QL04p005674 Quercus lobata HOM05D003146 ORTHO05D001819 8.1e-23 111.3 167 39.5
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 4.9e-20 102.1 174 35.6
QL04p032132 Quercus lobata HOM05D003146 ORTHO05D001819 6.4e-20 101.7 183 36.1
Actinidia18484 Actinidia chinensis HOM05D003146 ORTHO05D001819 3.5e-18 95.9 161 35.4
QL04p033186 Quercus lobata HOM05D003146 ORTHO05D001819 3.5e-18 95.9 183 35.5
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 3.0e-17 92.8 181 35.4
QL04p005594 Quercus lobata HOM05D003146 ORTHO05D001819 4.3e-16 89.0 166 33.1
PGSC0003DMG400034620 Solanum tuberosum HOM05D003146 ORTHO05D001819 5.6e-16 88.6 153 35.3
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 2.4e-14 83.2 168 33.9
PGR004G1752 Punica granatum HOM05D003146 ORTHO05D001819 2.4e-14 83.2 187 31.0
Aqoxy2G02574 Aquilegia oxysepala HOM05D030271 ORTHO05D026710 3.1e-14 82.8 157 33.1
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 9.0e-14 81.3 168 32.7
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 9.0e-14 81.3 148 30.4
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 2.0e-13 80.1 145 34.5
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 7.6e-13 78.2 184 32.1
PGR004G2081 Punica granatum HOM05D003146 ORTHO05D001819 1.7e-12 77.0 169 29.6
QL04p005661 Quercus lobata HOM05D003146 ORTHO05D001819 1.7e-12 77.0 181 32.6
QL04p005657 Quercus lobata HOM05D003146 ORTHO05D001819 6.4e-12 75.1 154 33.8
CAN.G338.43 Capsicum annuum HOM05D003146 ORTHO05D001819 8.4e-12 74.7 166 31.9
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 8.4e-12 74.7 181 31.5
Solyc09g072950.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 1.1e-11 74.3 152 32.2
CAN.G338.41 Capsicum annuum HOM05D003146 ORTHO05D001819 3.2e-11 72.8 180 30.6
Dinv22854 Davidia involucrata HOM05D009438 ORTHO05D010870 3.2e-11 72.8 147 32.7
Hma1.2p1_3273F.1_g334810 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 3.2e-11 72.8 134 37.3
Hma1.2p1_3469F.1_g336200 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 3.2e-11 72.8 134 37.3
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 5.4e-11 72.0 150 30.0
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 7.1e-11 71.6 177 28.2
MELO3C001332.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.2e-10 70.9 177 30.5
MELO3C028122.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.6e-10 70.5 176 30.7
Dinv22851 Davidia involucrata HOM05D009438 ORTHO05D010870 2.1e-10 70.1 169 32.0
MELO3C000722.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.7e-10 69.7 177 32.2
Dinv22850 Davidia involucrata HOM05D009438 ORTHO05D010870 2.7e-10 69.7 169 32.0
COL.COLO4_04545 Corchorus olitorius HOM05D015467 ORTHO05D001819 4.6e-10 68.9 174 29.3
Dinv22852 Davidia involucrata HOM05D009438 ORTHO05D010870 6.0e-10 68.6 169 31.4
Dinv22853 Davidia involucrata HOM05D009438 ORTHO05D010870 6.0e-10 68.6 169 31.4
MELO3C000387.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.9e-10 68.2 153 31.4
QL06p013377 Quercus lobata HOM05D003146 ORTHO05D001819 1.0e-09 67.8 177 28.8
CsaV3_UNG084670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.3e-09 67.4 153 30.1
CsaV3_UNG132030 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.3e-09 67.4 153 30.1
MELO3C019864.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-09 67.0 177 29.9
MELO3C035196.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.3e-09 66.6 115 33.0
MELO3C015291.2 Cucumis melo HOM05D003556 ORTHO05D003404 3.0e-09 66.2 182 29.7
MELO3C019867.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.0e-09 66.2 176 30.1
MELO3C000643.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.9e-09 65.9 147 30.6
MELO3C028017.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.9e-09 65.9 178 30.3
ClCG03G017200 Citrullus lanatus HOM05D003556 ORTHO05D003404 5.1e-09 65.5 156 28.8
MELO3C001272.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.7e-09 65.1 120 32.5
MELO3C032417.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.7e-09 65.1 177 29.9
CsaV3_UNG225750 Cucumis sativus L. HOM05D003146 ORTHO05D001819 6.7e-09 65.1 179 29.6
Hma1.2p1_1096F.1_g256660 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 6.7e-09 65.1 139 30.9
Atru.chr6.1289 Acer truncatum HOM05D004113 ORTHO05D001207 8.7e-09 64.7 121 28.1
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 8.7e-09 64.7 145 29.7
MELO3C019860.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.7e-09 64.7 176 30.7
CsaV3_1G038650 Cucumis sativus L. HOM05D003556 ORTHO05D003404 8.7e-09 64.7 181 28.7
CsaV3_2G000020 Cucumis sativus L. HOM05D003146 ORTHO05D001819 8.7e-09 64.7 147 29.9
CsaV3_6G026320 Cucumis sativus L. HOM05D003146 ORTHO05D001819 8.7e-09 64.7 174 29.9
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 8.7e-09 64.7 125 33.6
Atru.chr6.1291 Acer truncatum HOM05D004113 ORTHO05D001207 1.5e-08 63.9 149 29.5
MBI09_g40718_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.5e-08 63.9 135 26.7
Sed0024461 Sechium edule HOM05D003556 ORTHO05D003404 1.5e-08 63.9 182 26.4
MELO3C019686.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.9e-08 63.5 144 29.9
MELO3C025842.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.9e-08 63.5 176 28.4
Oeu000482.1 Olea europaea HOM05D009438 ORTHO05D010870 1.9e-08 63.5 136 28.7
MELO3C030065.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.5e-08 63.2 177 27.1
Rhsim07G0137900 Rhododendron simsii HOM05D009438 ORTHO05D010870 2.5e-08 63.2 184 25.5
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 3.3e-08 62.8 176 29.0
CsaV3_6G026340 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.3e-08 62.8 173 29.5
CsaV3_6G027350 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.3e-08 62.8 173 29.5
Migut.M01954 Erythranthe guttata HOM05D009438 ORTHO05D010870 3.3e-08 62.8 162 25.9
MELO3C030067.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.3e-08 62.4 144 29.9
MELO3C034829.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.3e-08 62.4 153 29.4
CsaV3_4G038000 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.3e-08 62.4 173 29.5
CsaV3_6G023780 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.3e-08 62.4 173 29.5
CsaV3_UNG007100 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.3e-08 62.4 173 29.5
CsaV3_UNG217460 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.3e-08 62.4 173 29.5
CsaV3_UNG235420 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.3e-08 62.4 173 29.5
MBI09_g01820_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 4.3e-08 62.4 135 27.4
MELO3C017944.2 Cucumis melo HOM05D003556 ORTHO05D003404 5.6e-08 62.0 148 25.0
MELO3C019866.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.6e-08 62.0 176 29.5
Actinidia18487 Actinidia chinensis HOM05D003146 ORTHO05D001819 7.4e-08 61.6 130 29.2
Rhsim04G0244200 Rhododendron simsii HOM05D003146 ORTHO05D001819 7.4e-08 61.6 194 33.0
CsaV3_4G000950 Cucumis sativus L. HOM05D003556 ORTHO05D003404 9.6e-08 61.2 169 23.7
ClCG06G004590 Citrullus lanatus HOM05D003146 ORTHO05D001819 1.3e-07 60.8 150 30.0
ClCG10G011070 Citrullus lanatus HOM05D003556 ORTHO05D003404 1.3e-07 60.8 168 23.8
ClCG11G011230 Citrullus lanatus HOM05D003146 ORTHO05D001819 1.3e-07 60.8 148 26.4
MELO3C027585.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.3e-07 60.8 173 28.9
MELO3C027589.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.3e-07 60.8 143 30.1
Duzib052G0880 Durio zibethinus HOM05D001578 ORTHO05D001207 1.3e-07 60.8 149 26.2
PGR004G1348 Punica granatum HOM05D008403 ORTHO05D010317 1.3e-07 60.8 163 27.0
Rhsim07G0138100 Rhododendron simsii HOM05D009438 ORTHO05D010870 1.3e-07 60.8 145 25.5
MELO3C030077.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.6e-07 60.5 177 28.8
Thhalv10012028m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 1.6e-07 60.5 163 26.4
Lalb_Chr20g0119681 Lupinus albus HOM05D008403 ORTHO05D010317 1.6e-07 60.5 167 25.7
Sp3g15450 Schrenkiella parvula HOM05D008745 ORTHO05D010941 1.6e-07 60.5 162 27.8
Aqoxy7G04181 Aquilegia oxysepala HOM05D001445 ORTHO05D003404 2.1e-07 60.1 182 25.8
MELO3C030064.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.1e-07 60.1 177 28.2
Thhalv10021601m.g Eutrema salsugineum HOM05D008745 ORTHO05D010941 2.1e-07 60.1 171 25.7
Aqoxy3G03791 Aquilegia oxysepala HOM05D023066 ORTHO05D001819 3.7e-07 59.3 128 28.1
MELO3C027398.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.7e-07 59.3 177 27.1
Eucgr.L02459 Eucalyptus grandis HOM05D001445 ORTHO05D001261 3.7e-07 59.3 178 27.0
Rhsim06G0181100 Rhododendron simsii HOM05D009438 ORTHO05D001819 3.7e-07 59.3 144 30.6
Sp3g15410 Schrenkiella parvula HOM05D008745 ORTHO05D010941 3.7e-07 59.3 138 29.0
BcaC05g28814 Brassica carinata HOM05D008745 ORTHO05D010941 4.8e-07 58.9 179 25.7
MELO3C027590.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.8e-07 58.9 153 28.1
MELO3C030075.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.8e-07 58.9 142 30.3
Eucgr.D01180 Eucalyptus grandis HOM05D001445 ORTHO05D001261 4.8e-07 58.9 178 27.0
Nn3g20356 Nelumbo nucifera HOM05D003146 ORTHO05D001819 4.8e-07 58.9 155 26.5
Rhsim03G0038200 Rhododendron simsii HOM05D001578 ORTHO05D001207 4.8e-07 58.9 132 29.5
Thecc.10G106100 Theobroma cacao HOM05D015467 ORTHO05D001819 4.8e-07 58.9 179 29.1
MELO3C034932.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.2e-07 58.5 177 26.6
MBI09_g02146_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 6.2e-07 58.5 135 26.7
Actinidia14750 Actinidia chinensis HOM05D009438 ORTHO05D010870 8.1e-07 58.2 147 21.8
MD11G1307600 Malus domestica HOM05D003556 ORTHO05D003404 8.1e-07 58.2 153 24.2
Actinidia18154 Actinidia chinensis HOM05D009438 ORTHO05D010870 1.1e-06 57.8 150 21.3
C05p49180 Brassica napus HOM05D008745 ORTHO05D010941 1.1e-06 57.8 179 25.7
MELO3C032509.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-06 57.8 147 29.3
Thhalv10022367m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 1.1e-06 57.8 144 23.6
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 1.1e-06 57.8 125 28.8
Manes.10G035700 Manihot esculenta HOM05D004113 ORTHO05D005233 1.1e-06 57.8 153 26.8
PSO144G0022 Papaver somniferum HOM05D023066 ORTHO05D037272 1.1e-06 57.8 153 25.5
MELO3C034867.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.4e-06 57.4 178 28.7
Gorai.002G031200 Gossypium raimondii HOM05D001578 ORTHO05D001207 1.4e-06 57.4 127 30.7
Rhsim03G0038700 Rhododendron simsii HOM05D001578 ORTHO05D001207 1.4e-06 57.4 131 29.8
Actinidia28299 Actinidia chinensis HOM05D003146 ORTHO05D001819 1.8e-06 57.0 122 32.8
MELO3C027044.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-06 57.0 178 28.7
MELO3C027625.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-06 57.0 118 30.5
Eucgr.D01181 Eucalyptus grandis HOM05D001445 ORTHO05D001261 1.8e-06 57.0 176 26.7
Manes.10G035400 Manihot esculenta HOM05D004113 ORTHO05D005233 1.8e-06 57.0 153 26.1
BolC5t33659H Brassica oleracea HOM05D008745 ORTHO05D010941 2.4e-06 56.6 179 25.1
Gohir.A01G035300 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.4e-06 56.6 149 30.9
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 2.4e-06 56.6 149 28.2
Rhsim03G0038600 Rhododendron simsii HOM05D000036 ORTHO05D005472 2.4e-06 56.6 163 28.8
CsaV3_6G021230 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.1e-06 56.2 137 31.4
MBI19_g26316_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 3.1e-06 56.2 137 29.9
Potri.006G134900 Populus trichocarpa HOM05D004113 ORTHO05D003404 3.1e-06 56.2 188 27.1
Sed0022729 Sechium edule HOM05D003146 ORTHO05D001819 3.1e-06 56.2 127 27.6
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 4.0e-06 55.8 150 25.3
Carub.0006s2544 Capsella rubella HOM05D008745 ORTHO05D010941 4.0e-06 55.8 144 28.5
Cpa.g.sc9.24 Carica papaya HOM05D001578 ORTHO05D001207 4.0e-06 55.8 84 33.3
Dinv02021 Davidia involucrata HOM05D010983 ORTHO05D005996 4.0e-06 55.8 90 36.7
Migut.M00087 Erythranthe guttata HOM05D009438 ORTHO05D010870 4.0e-06 55.8 133 29.3
Prupe.3G007700 Prunus persica HOM05D001578 ORTHO05D001207 4.0e-06 55.8 125 26.4
BraA05t22077Z Brassica rapa HOM05D008745 ORTHO05D010941 5.3e-06 55.5 176 25.6
Glyma.15G207000 Glycine max HOM05D007995 ORTHO05D001819 5.3e-06 55.5 174 25.9
Sed0028173 Sechium edule HOM05D003556 ORTHO05D003404 5.3e-06 55.5 186 23.7
Ciclev10010801m.g Citrus clementina HOM05D009438 ORTHO05D001819 6.9e-06 55.1 149 28.9
COL.COLO4_24557 Corchorus olitorius HOM05D015467 ORTHO05D001819 6.9e-06 55.1 182 26.4
MELO3C028053.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.9e-06 55.1 111 30.6
Glyma.15G207100 Glycine max HOM05D007995 ORTHO05D001819 6.9e-06 55.1 174 25.9
MBI13_g00568_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D001819 6.9e-06 55.1 159 21.4
MBI13_g01661_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D002265 6.9e-06 55.1 178 26.4
Manes.10G035200 Manihot esculenta HOM05D004113 ORTHO05D005233 6.9e-06 55.1 153 24.8
Thecc.05G326400 Theobroma cacao HOM05D011459 ORTHO05D013640 6.9e-06 55.1 123 30.1
Thecc.09G068900 Theobroma cacao HOM05D001445 ORTHO05D003404 6.9e-06 55.1 174 25.3
TWI34G1970 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 6.9e-06 55.1 151 25.8
Migut.I00331 Erythranthe guttata HOM05D022792 ORTHO05D001819 9.0e-06 54.7 96 31.2
FAN07G1186 Fragaria x ananassa HOM05D017096 ORTHO05D019131 9.0e-06 54.7 191 24.1
MBI04_g11519_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D005233 9.0e-06 54.7 167 28.1
Phvul.003G117100 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 9.0e-06 54.7 174 24.1
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 9.0e-06 54.7 186 24.7
TWI09G0175 Tripterygium wilfordii HOM05D003146 ORTHO05D001819 9.0e-06 54.7 137 29.9


User provided reference genes

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