Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 9.9e-228 793.1 404 100.0
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 2.2e-174 615.9 444 73.9
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 4.6e-156 555.1 401 71.6
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.2e-151 540.4 403 71.0
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.4e-151 538.9 403 71.0
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 3.4e-151 538.9 405 71.6
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 6.4e-150 534.6 412 69.9
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 7.0e-149 531.2 327 81.3
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 9.2e-149 530.8 406 66.7
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 1.7e-147 526.6 426 67.4
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 1.7e-139 500.0 327 78.6
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 3.9e-139 498.8 408 67.9
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 8.6e-139 497.7 327 78.3
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.9e-138 496.5 329 77.2
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 2.5e-138 496.1 408 67.6
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 3.3e-138 495.7 329 76.9
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 3.3e-138 495.7 332 75.9
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 1.6e-137 493.4 327 77.4
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 1.1e-136 490.7 327 77.1
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 4.4e-135 485.3 327 75.8
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 5.8e-135 485.0 329 76.9
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 9.9e-135 484.2 327 76.8
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 4.9e-134 481.9 328 74.7
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 8.4e-134 481.1 333 74.8
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.4e-133 478.4 327 75.8
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 7.1e-133 478.0 327 75.2
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 7.1e-133 478.0 327 75.8
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 1.2e-132 477.2 327 74.6
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 2.1e-132 476.5 336 73.5
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 3.5e-132 475.7 327 75.5
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.7e-131 473.4 412 62.1
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 6.6e-131 471.5 333 74.5
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.5e-130 470.3 416 62.3
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.9e-130 469.9 333 73.6
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 4.3e-130 468.8 327 74.0
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 5.6e-130 468.4 329 74.2
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 5.6e-130 468.4 324 74.4
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.6e-129 466.8 397 63.2
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 2.1e-129 466.5 327 74.0
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.1e-128 464.2 328 72.9
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.8e-128 463.4 329 72.9
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 3.1e-128 462.6 333 72.1
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 9.0e-128 461.1 327 74.3
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.2e-127 460.7 350 69.4
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.5e-127 460.3 327 71.6
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 1.5e-127 460.3 336 71.7
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.0e-127 459.9 328 74.1
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 5.8e-127 458.4 324 74.7
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 2.9e-126 456.1 327 70.6
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 3.8e-126 455.7 331 71.6
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 6.4e-126 454.9 327 72.5
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 6.4e-126 454.9 329 72.0
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 6.4e-126 454.9 353 65.2
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 1.4e-125 453.8 329 71.7
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 4.2e-125 452.2 327 72.5
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 2.1e-124 449.9 324 74.1
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 2.1e-124 449.9 390 63.3
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 2.7e-124 449.5 329 71.1
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.0e-123 447.6 327 68.5
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.3e-123 447.2 327 71.9
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 3.9e-123 445.7 361 65.1
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 3.9e-123 445.7 374 63.6
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 4.3e-122 442.2 324 70.7
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.6e-122 441.8 325 68.3
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 7.3e-122 441.4 323 68.1
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 6.2e-121 438.3 363 65.6
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.4e-120 437.2 340 66.5
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 1.4e-120 437.2 327 70.3
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 2.4e-120 436.4 325 69.8
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 5.3e-120 435.3 324 69.1
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 5.3e-120 435.3 298 76.8
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 3.4e-119 432.6 322 71.7
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 4.5e-119 432.2 327 66.7
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.8e-119 431.8 343 67.1
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 1.3e-118 430.6 326 69.3
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 1.7e-118 430.3 327 66.1
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 2.9e-118 429.5 323 64.7
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 3.8e-118 429.1 328 68.9
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.1e-117 427.6 328 68.0
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.9e-117 426.8 329 68.1
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 2.4e-117 426.4 335 67.2
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.2e-116 424.1 327 63.0
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 7.9e-116 421.4 326 68.7
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 7.9e-116 421.4 329 68.4
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.1e-114 417.5 327 67.0
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 5.6e-114 415.2 328 68.0
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 1.3e-113 414.1 379 59.1
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 2.1e-113 413.3 328 68.3
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.8e-112 410.2 329 66.6
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 4.0e-112 409.1 328 65.9
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 4.0e-112 409.1 321 68.8
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 1.5e-111 407.1 327 67.0
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 2.0e-111 406.8 327 68.2
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.4e-109 400.6 328 64.9
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 7.1e-109 398.3 329 64.7
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 2.7e-108 396.4 330 62.4
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 4.6e-108 395.6 332 63.6
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 7.9e-108 394.8 339 64.3
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.9e-106 390.2 327 64.8
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 2.5e-106 389.8 435 52.9
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 7.4e-106 388.3 327 63.3
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 7.4e-106 388.3 287 72.8
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.1e-105 386.7 328 62.5
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 2.8e-105 386.3 298 69.5
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 8.2e-105 384.8 330 61.5
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 4.0e-104 382.5 327 63.3
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 6.9e-104 381.7 239 70.7
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.5e-103 380.6 327 56.0
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.4e-103 379.4 286 64.7
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 7.6e-103 378.3 324 60.8
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 2.2e-102 376.7 298 68.5
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 1.2e-100 370.9 346 54.3
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.0e-99 367.9 327 59.6
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 3.9e-99 365.9 328 60.7
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.9e-99 365.9 321 61.7
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.9e-99 365.9 243 69.5
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 5.1e-99 365.5 438 51.6
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 5.7e-98 362.1 328 59.8
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 7.4e-98 361.7 327 59.0
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 1.6e-97 360.5 328 59.1
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 3.7e-97 359.4 325 60.0
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 6.3e-97 358.6 325 59.1
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 1.1e-96 357.8 324 58.6
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 1.8e-96 357.1 325 59.1
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.8e-96 357.1 325 59.1
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 2.0e-95 353.6 334 58.4
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 2.6e-95 353.2 408 53.9
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.6e-95 353.2 280 70.7
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 3.4e-95 352.8 421 47.3
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 2.9e-94 349.7 411 50.9
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 7.2e-93 345.1 332 51.5
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 1.4e-91 340.9 414 50.5
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.4e-91 340.9 374 54.5
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 6.7e-91 338.6 296 58.8
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 9.7e-90 334.7 419 51.8
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 9.7e-90 334.7 375 53.3
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.7e-89 334.0 190 76.8
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 6.3e-89 332.0 324 49.4
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 6.3e-89 332.0 419 49.4
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 8.2e-89 331.6 428 48.6
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 8.2e-89 331.6 375 55.5
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.4e-88 330.1 265 64.2
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 5.3e-88 328.9 418 50.5
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 3.4e-87 326.2 460 45.4
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 1.3e-86 324.3 382 51.6
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 9.4e-85 318.2 373 49.6
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 2.7e-84 316.6 328 52.7
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.9e-84 315.1 327 56.9
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 1.4e-83 314.3 317 51.7
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 2.3e-83 313.5 379 48.8
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 2.5e-77 293.5 325 52.3
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 1.2e-76 291.2 328 50.6
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.0e-75 288.1 327 53.2
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.2e-69 266.2 322 45.7
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.4e-67 261.2 191 64.4
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 3.5e-63 246.5 343 45.2
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 2.2e-62 243.8 347 46.4
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.3e-53 213.4 168 60.7
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 4.2e-53 213.0 321 44.5
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 6.8e-51 205.7 196 45.9
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.7e-49 201.1 342 39.8
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.2e-42 178.3 93 84.9
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 8.3e-33 145.6 74 85.1
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 5.4e-32 142.9 69 92.8
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 2.5e-21 107.5 110 42.7
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 7.3e-21 105.9 91 71.4
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 2.7e-15 87.4 38 100.0
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 3.5e-15 87.0 48 81.2
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 2.4e-11 74.3 90 70.0


User provided reference genes

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