Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 1.4e-50 202.6 96 100.0
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 5.4e-39 164.1 88 93.2
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 2.9e-37 158.3 88 88.6
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 4.7e-35 151.0 90 82.2
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 2.0e-33 145.6 106 71.7
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 3.5e-30 134.8 93 67.7
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 1.0e-29 133.3 92 67.4
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 1.0e-29 133.3 93 67.7
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 2.3e-29 132.1 92 66.3
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 3.0e-29 131.7 92 68.5
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 3.9e-29 131.3 93 68.8
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 3.3e-28 128.3 86 68.6
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 5.6e-28 127.5 93 62.4
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 7.3e-28 127.1 93 61.3
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 7.3e-28 127.1 86 68.6
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 9.5e-28 126.7 88 64.8
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 9.5e-28 126.7 93 63.4
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 1.6e-27 125.9 93 65.6
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 1.6e-27 125.9 93 61.3
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 1.6e-27 125.9 93 64.5
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 2.1e-27 125.6 93 60.2
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 2.8e-27 125.2 93 64.5
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 4.7e-27 124.4 88 64.8
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 1.1e-26 123.2 88 63.6
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 1.8e-26 122.5 88 65.9
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 1.8e-26 122.5 88 63.6
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 2.3e-26 122.1 88 64.8
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 8.9e-26 120.2 93 59.1
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.5e-20 102.8 90 53.3
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 1.6e-19 99.4 92 54.3
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 4.7e-19 97.8 88 53.4
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 1.1e-18 96.7 89 52.8
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 1.4e-18 96.3 88 53.4
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 3.1e-18 95.1 88 51.1
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 3.1e-18 95.1 88 51.1
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 3.1e-18 95.1 90 51.1
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 5.2e-18 94.4 86 48.8
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 8.9e-18 93.6 92 47.8
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 2.6e-17 92.0 93 52.7
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 3.4e-17 91.7 87 50.6
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 4.4e-17 91.3 89 50.6
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 7.6e-17 90.5 90 48.9
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 7.6e-17 90.5 93 50.5
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 7.6e-17 90.5 88 52.3
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 1.3e-16 89.7 93 48.4
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 1.7e-16 89.4 88 45.5
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.7e-16 89.4 87 52.9
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 1.7e-16 89.4 88 46.6
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 1.7e-16 89.4 88 46.6
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 2.9e-16 88.6 90 44.4
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 2.9e-16 88.6 90 41.1
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 3.7e-16 88.2 89 50.6
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 4.9e-16 87.8 90 47.8
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 4.9e-16 87.8 89 50.6
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 4.9e-16 87.8 91 49.5
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 4.9e-16 87.8 91 49.5
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 4.9e-16 87.8 90 48.9
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 6.4e-16 87.4 91 48.4
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 6.4e-16 87.4 93 47.3
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 8.3e-16 87.0 90 46.7
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 8.3e-16 87.0 90 48.9
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 1.1e-15 86.7 90 48.9
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.4e-15 86.3 90 47.8
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.4e-15 86.3 90 47.8
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 1.4e-15 86.3 90 47.8
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 2.4e-15 85.5 91 48.4
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 3.2e-15 85.1 90 45.6
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 3.2e-15 85.1 90 46.7
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 3.2e-15 85.1 90 46.7
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 3.2e-15 85.1 92 48.9
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 5.4e-15 84.3 83 53.0
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 7.1e-15 84.0 92 45.7
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 7.1e-15 84.0 85 47.1
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 7.1e-15 84.0 90 45.6
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 9.2e-15 83.6 90 45.6
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 1.2e-14 83.2 88 44.3
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 1.2e-14 83.2 88 44.3
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 1.6e-14 82.8 90 44.4
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 2.1e-14 82.4 90 45.6
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 2.1e-14 82.4 90 45.6
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 2.1e-14 82.4 90 45.6
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 2.1e-14 82.4 90 45.6
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 2.7e-14 82.0 90 44.4
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 4.6e-14 81.3 88 45.5
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 6.0e-14 80.9 84 47.6
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 6.0e-14 80.9 90 44.4
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 1.0e-13 80.1 85 51.8
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 1.7e-13 79.3 85 47.1
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 2.3e-13 79.0 70 55.7
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 3.9e-13 78.2 90 44.4
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 7.3e-12 73.9 79 44.3
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 2.1e-11 72.4 78 42.3
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 6.2e-11 70.9 115 37.4
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 1.1e-10 70.1 85 42.4
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 2.4e-10 68.9 72 47.2
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 1.5e-09 66.2 82 41.5
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.7e-08 62.8 45 60.0
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 2.9e-08 62.0 60 48.3
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 5.4e-07 57.8 90 36.7
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 1.2e-06 56.6 41 58.5


User provided reference genes

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