Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 2.7e-71 271.9 143 100.0
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 5.8e-29 131.3 100 78.0
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 6.8e-22 107.8 91 71.4
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 5.8e-21 104.8 64 73.4
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 1.6e-18 96.7 105 60.0
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 3.9e-17 92.0 82 65.9
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 3.9e-17 92.0 100 58.0
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.9e-16 89.7 66 77.3
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.5e-16 89.4 100 59.0
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 2.5e-16 89.4 71 71.8
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.5e-16 89.4 71 71.8
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.5e-16 89.4 71 71.8
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.5e-16 89.4 71 71.8
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 3.3e-16 89.0 74 71.6
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.3e-16 89.0 82 64.6
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.3e-16 89.0 82 64.6
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 3.3e-16 89.0 71 73.2
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.3e-16 88.6 89 62.9
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 4.3e-16 88.6 84 59.5
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 5.6e-16 88.2 91 59.3
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.3e-16 87.8 64 64.1
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.3e-16 87.8 64 64.1
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 7.3e-16 87.8 106 54.7
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 7.3e-16 87.8 70 72.9
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 7.3e-16 87.8 71 70.4
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.6e-15 86.7 70 71.4
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 2.1e-15 86.3 74 67.6
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.1e-15 86.3 81 65.4
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 2.8e-15 85.9 92 58.7
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 2.8e-15 85.9 65 75.4
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.8e-15 85.9 93 57.0
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 3.6e-15 85.5 66 74.2
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 3.6e-15 85.5 89 64.0
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 3.6e-15 85.5 102 52.0
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 3.6e-15 85.5 102 52.0
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 4.7e-15 85.1 97 58.8
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.7e-15 85.1 70 64.3
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 4.7e-15 85.1 91 59.3
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 6.2e-15 84.7 89 59.6
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 6.2e-15 84.7 88 60.2
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 6.2e-15 84.7 79 59.5
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.1e-14 84.0 91 58.2
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.4e-14 83.6 91 59.3
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 1.4e-14 83.6 76 68.4
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.4e-14 83.6 66 72.7
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.8e-14 83.2 91 60.4
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.8e-14 83.2 70 70.0
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.8e-14 83.2 70 70.0
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 1.8e-14 83.2 88 60.2
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.3e-14 82.8 67 73.1
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 2.3e-14 82.8 67 73.1
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 3.1e-14 82.4 66 72.7
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 4.0e-14 82.0 91 54.9
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 5.2e-14 81.6 67 71.6
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 5.2e-14 81.6 65 72.3
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 6.8e-14 81.3 101 52.5
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 8.9e-14 80.9 70 65.7
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 8.9e-14 80.9 71 66.2
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 1.2e-13 80.5 66 66.7
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 2.0e-13 79.7 102 52.0
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 3.4e-13 79.0 71 69.0
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 4.4e-13 78.6 114 50.0
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 4.4e-13 78.6 85 56.5
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 5.8e-13 78.2 79 58.2
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 7.5e-13 77.8 67 68.7
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 7.5e-13 77.8 71 63.4
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 9.9e-13 77.4 98 51.0
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 1.3e-12 77.0 100 52.0
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.7e-12 76.6 71 63.4
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.2e-12 76.3 66 66.7
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 2.9e-12 75.9 77 58.4
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 3.7e-12 75.5 66 65.2
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 6.4e-12 74.7 93 51.6
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 6.4e-12 74.7 64 68.8
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 8.3e-12 74.3 66 66.7
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.1e-11 73.9 67 65.7
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.1e-11 73.9 66 63.6
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 1.4e-11 73.6 70 62.9
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 1.4e-11 73.6 70 62.9
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.4e-11 73.6 72 58.3
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.9e-11 73.2 65 67.7
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.9e-11 73.2 65 67.7
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 2.4e-11 72.8 63 68.3
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 2.4e-11 72.8 118 44.9
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 2.4e-11 72.8 63 66.7
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 2.4e-11 72.8 95 51.6
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 3.2e-11 72.4 66 62.1
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 3.2e-11 72.4 94 50.0
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 3.2e-11 72.4 66 62.1
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 3.2e-11 72.4 88 53.4
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 3.2e-11 72.4 97 49.5
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 4.1e-11 72.0 79 58.2
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 5.4e-11 71.6 67 62.7
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.4e-11 71.6 73 60.3
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 7.1e-11 71.2 94 50.0
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 7.1e-11 71.2 64 67.2
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 7.1e-11 71.2 52 59.6
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 9.2e-11 70.9 65 66.2
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.6e-10 70.1 98 49.0
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 2.1e-10 69.7 67 61.2
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 2.7e-10 69.3 41 65.9
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 2.7e-10 69.3 83 54.2
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 4.6e-10 68.6 70 47.1
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 6.0e-10 68.2 72 54.2
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 6.0e-10 68.2 110 37.3
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 2.3e-09 66.2 74 56.8
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 3.0e-09 65.9 61 59.0
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 1.1e-08 63.9 74 55.4
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.5e-08 62.8 56 62.5
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 4.3e-08 62.0 47 53.2
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 5.6e-08 61.6 57 61.4
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 7.3e-08 61.2 33 78.8
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.2e-07 60.5 74 51.4
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.2e-07 60.5 74 54.1
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 1.6e-07 60.1 97 41.2
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.6e-07 58.9 33 66.7
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 6.2e-07 58.2 33 66.7
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 3.1e-06 55.8 96 43.8
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 4.0e-06 55.5 30 70.0
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 8.9e-06 54.3 53 56.6


User provided reference genes

Program Settings