Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 1.6e-155 552.7 289 100.0
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 5.3e-90 335.1 340 60.9
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 1.4e-82 310.5 320 60.0
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 3.5e-73 279.3 317 55.2
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 1.1e-71 274.2 292 58.2
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 4.2e-71 272.3 326 53.1
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 1.4e-69 267.3 317 53.3
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 9.7e-68 261.2 320 54.7
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 2.2e-67 260.0 272 58.8
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 3.7e-67 259.2 306 54.2
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 4.8e-67 258.8 332 52.4
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 8.2e-67 258.1 308 52.6
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 1.1e-66 257.7 298 56.0
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 9.1e-66 254.6 315 53.3
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 9.1e-66 254.6 297 54.2
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 5.0e-64 248.8 302 54.0
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 6.5e-64 248.4 320 52.5
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.9e-63 246.9 303 53.5
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 4.2e-63 245.7 298 55.0
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 7.2e-63 245.0 307 53.7
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 9.4e-63 244.6 302 54.0
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 2.7e-62 243.0 179 71.5
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 2.7e-62 243.0 215 61.9
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 1.0e-61 241.1 180 71.7
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.4e-61 240.7 303 52.8
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.8e-61 240.4 312 52.2
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 3.4e-60 236.1 300 55.0
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 3.4e-60 236.1 174 73.0
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 5.7e-60 235.3 158 77.2
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 9.7e-60 234.6 278 52.9
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 1.1e-58 231.1 196 65.8
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 1.6e-57 227.3 318 50.3
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 2.0e-57 226.9 195 64.1
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 2.0e-57 226.9 296 52.4
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 2.7e-57 226.5 173 68.8
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 4.5e-57 225.7 298 50.0
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 4.5e-57 225.7 294 50.7
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 7.7e-57 224.9 293 51.2
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 1.7e-56 223.8 297 50.8
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 2.9e-56 223.0 279 52.0
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 1.9e-55 220.3 270 50.7
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 3.2e-55 219.5 285 49.5
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 7.2e-55 218.4 299 50.2
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 9.4e-55 218.0 301 50.5
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 9.4e-55 218.0 286 47.6
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 6.1e-54 215.3 285 54.7
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 8.0e-54 214.9 296 48.6
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 1.4e-53 214.2 272 50.4
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 3.0e-53 213.0 302 49.7
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 6.8e-53 211.8 298 51.3
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 1.2e-52 211.1 272 49.3
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 1.7e-51 207.2 300 46.7
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 1.1e-50 204.5 157 69.4
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 3.1e-50 203.0 288 47.2
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 4.1e-50 202.6 227 53.7
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.6e-49 200.7 291 47.4
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 5.9e-49 198.7 222 52.7
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 1.0e-48 198.0 174 64.9
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 1.7e-48 197.2 219 55.7
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 2.3e-48 196.8 268 46.3
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 2.9e-48 196.4 268 50.7
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 2.9e-48 196.4 164 65.2
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 3.8e-48 196.1 285 48.1
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 6.6e-48 195.3 171 60.2
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 8.6e-48 194.9 285 49.5
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 8.6e-48 194.9 285 49.5
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 1.1e-47 194.5 172 62.8
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 1.9e-47 193.7 255 52.2
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 2.5e-47 193.4 285 46.7
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 5.5e-47 192.2 191 59.2
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 5.5e-47 192.2 172 59.3
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 1.2e-46 191.0 262 50.4
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 2.8e-46 189.9 284 45.8
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 2.8e-46 189.9 195 56.4
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 8.0e-46 188.3 208 53.8
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 8.0e-46 188.3 289 47.1
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 4.0e-45 186.0 171 60.8
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 5.2e-45 185.7 171 61.4
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 6.8e-45 185.3 286 47.2
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 6.8e-45 185.3 286 47.2
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 4.4e-44 182.6 152 65.8
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 1.3e-43 181.0 143 68.5
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 2.8e-43 179.9 203 57.1
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 6.3e-43 178.7 203 56.2
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 6.3e-43 178.7 165 61.8
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 8.3e-43 178.3 172 61.0
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 8.3e-43 178.3 170 62.4
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 3.2e-42 176.4 232 50.0
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 4.1e-42 176.0 163 60.1
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 1.1e-39 167.9 112 77.7
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 3.3e-39 166.4 112 76.8
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 9.5e-39 164.9 112 76.8
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 8.0e-38 161.8 116 69.8
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 3.1e-37 159.8 112 75.9
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 1.2e-36 157.9 257 44.0
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 6.4e-35 152.1 169 52.7
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 8.3e-35 151.8 164 51.8
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 1.4e-34 151.0 265 44.9
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 7.0e-34 148.7 125 64.0
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 7.3e-31 138.7 115 64.3
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 1.4e-26 124.4 144 54.2
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 1.6e-25 120.9 154 45.5
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 2.7e-25 120.2 181 42.5
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 1.1e-21 108.2 183 41.5
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 5.8e-20 102.4 120 44.2
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 2.2e-19 100.5 67 73.1
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 3.0e-16 90.1 85 56.5
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 3.0e-16 90.1 172 40.1
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 2.4e-13 80.5 85 60.0
Aqoxy1G00218 Aquilegia oxysepala HOM05D000196 ORTHO05D000279 1.7e-11 74.3 312 29.5
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 2.2e-11 73.9 150 34.0
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 6.4e-11 72.4 51 74.5
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 4.6e-09 66.2 145 36.6
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 1.7e-08 64.3 86 47.7
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.5e-07 61.2 52 53.8


User provided reference genes

Program Settings