Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p005176 Quercus lobata HOM05D002401 ORTHO05D006143 5.1e-81 304.3 148 100.0
QL02p010939 Quercus lobata HOM05D002401 ORTHO05D006143 1.4e-70 269.6 140 92.9
Hma1.2p1_0260F.1_g104390 Hydrangea macrophylla HOM05D002401 ORTHO05D006143 5.9e-45 184.5 140 67.9
Cfa020647 Carpinus fangiana HOM05D002401 ORTHO05D006143 4.2e-43 178.3 140 63.6
CiPaw.16G052500 Carya illinoinensis HOM05D002401 ORTHO05D006143 9.5e-43 177.2 138 63.0
TAR376G0282 Trochodendron aralioides HOM05D002401 ORTHO05D006143 1.0e-41 173.7 142 62.7
CiPaw.06G110100 Carya illinoinensis HOM05D002401 ORTHO05D006143 2.8e-39 165.6 136 61.0
Dinv29831 Davidia involucrata HOM05D002401 ORTHO05D006143 2.8e-39 165.6 141 61.0
Ciclev10002047m.g Citrus clementina HOM05D002401 ORTHO05D006143 3.7e-39 165.2 140 60.0
TAR628G1629 Trochodendron aralioides HOM05D002401 ORTHO05D006143 6.3e-39 164.5 140 59.3
Atru.chr13.576 Acer truncatum HOM05D002401 ORTHO05D006143 1.1e-38 163.7 129 62.0
CSS0037792 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D006143 5.4e-38 161.4 142 59.2
CSS0045600 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D006143 5.4e-38 161.4 142 59.2
MD06G1010800 Malus domestica HOM05D002401 ORTHO05D006143 7.0e-38 161.0 138 60.9
Prupe.5G012900 Prunus persica HOM05D002401 ORTHO05D006143 7.0e-38 161.0 138 58.0
Duzib041G0147 Durio zibethinus HOM05D002401 ORTHO05D006143 5.9e-37 157.9 140 57.1
Dinv29837 Davidia involucrata HOM05D002401 ORTHO05D006143 1.7e-36 156.4 137 58.4
COL.COLO4_26393 Corchorus olitorius HOM05D002401 ORTHO05D006143 8.6e-36 154.1 87 74.7
Gohir.A05G197900 Gossypium hirsutum HOM05D002401 ORTHO05D006143 2.5e-35 152.5 109 58.7
GSVIVG01011051001 Vitis vinifera HOM05D002401 ORTHO05D006143 2.5e-35 152.5 139 55.4
A08p18900 Brassica napus HOM05D002401 ORTHO05D006143 4.3e-35 151.8 114 63.2
Carub.0001s3634 Capsella rubella HOM05D002401 ORTHO05D006143 4.3e-35 151.8 112 59.8
Rhsim06G0039300 Rhododendron simsii HOM05D002401 ORTHO05D006143 4.3e-35 151.8 133 54.9
Gorai.009G206100 Gossypium raimondii HOM05D002401 ORTHO05D006143 7.3e-35 151.0 109 58.7
Sp7g28930 Schrenkiella parvula HOM05D002401 ORTHO05D006143 7.3e-35 151.0 114 62.3
AL7G21020 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 9.5e-35 150.6 114 62.3
BcaC09g51892 Brassica carinata HOM05D002401 ORTHO05D006143 9.5e-35 150.6 113 61.9
Gohir.D05G200800 Gossypium hirsutum HOM05D002401 ORTHO05D006143 9.5e-35 150.6 109 58.7
RcHm_v2.0_Chr5g0074221 Rosa chinensis HOM05D002401 ORTHO05D006143 1.2e-34 150.2 140 53.6
Thecc.08G019900 Theobroma cacao HOM05D002401 ORTHO05D006143 1.6e-34 149.8 140 53.6
CARHR238960 Cardamine hirsuta HOM05D002401 ORTHO05D006143 2.1e-34 149.4 112 59.8
FAN15G1231 Fragaria x ananassa HOM05D002401 ORTHO05D006143 2.1e-34 149.4 140 54.3
C01p07880 Brassica napus HOM05D002401 ORTHO05D006143 2.8e-34 149.1 112 60.7
BolC1t00775H Brassica oleracea HOM05D002401 ORTHO05D006143 2.8e-34 149.1 112 60.7
TWI56G0576 Tripterygium wilfordii HOM05D002401 ORTHO05D006143 3.6e-34 148.7 129 55.0
BcaB03g12674 Brassica carinata HOM05D002401 ORTHO05D006143 4.7e-34 148.3 113 60.2
Sed0016228 Sechium edule HOM05D002401 ORTHO05D006143 4.7e-34 148.3 130 53.1
AT4G31050 Arabidopsis thaliana HOM05D002401 ORTHO05D006143 6.1e-34 147.9 112 59.8
Sp1g34610 Schrenkiella parvula HOM05D002401 ORTHO05D006143 6.1e-34 147.9 114 61.4
BcaNung03418 Brassica carinata HOM05D002401 ORTHO05D006143 8.0e-34 147.5 117 59.0
Sabra02G0103000 Salix brachista HOM05D002401 ORTHO05D006143 1.0e-33 147.1 127 56.7
Carub.0007s0947 Capsella rubella HOM05D002401 ORTHO05D006143 1.4e-33 146.7 85 71.8
FvH4_2g26090 Fragaria vesca HOM05D002401 ORTHO05D006143 1.4e-33 146.7 140 54.3
FAN24G0239 Fragaria x ananassa HOM05D002401 ORTHO05D006143 1.4e-33 146.7 140 54.3
THA.LOC104803396 Tarenaya hassleriana HOM05D002401 ORTHO05D006143 1.4e-33 146.7 85 74.1
RcHm_v2.0_Chr6g0294461 Rosa chinensis HOM05D002401 ORTHO05D006143 1.8e-33 146.4 145 52.4
Thhalv10025943m.g Eutrema salsugineum HOM05D002401 ORTHO05D006143 2.3e-33 146.0 113 62.8
FAN27G1995 Fragaria x ananassa HOM05D002401 ORTHO05D006143 2.3e-33 146.0 140 54.3
PSO700G0184 Papaver somniferum HOM05D002401 ORTHO05D006143 2.3e-33 146.0 87 74.7
Aa31LG2G19270 Aethionema arabicum HOM05D002401 ORTHO05D006143 3.0e-33 145.6 119 56.3
AL1G53870 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 3.0e-33 145.6 116 61.2
A01p07120 Brassica napus HOM05D002401 ORTHO05D006143 4.0e-33 145.2 113 60.2
BraA01t00664Z Brassica rapa HOM05D002401 ORTHO05D006143 4.0e-33 145.2 113 60.2
PSO170G5894 Papaver somniferum HOM05D002401 ORTHO05D006143 4.0e-33 145.2 83 78.3
Rhsim08G0075100 Rhododendron simsii HOM05D002401 ORTHO05D006143 1.2e-32 143.7 130 58.5
AT1G47578 Arabidopsis thaliana HOM05D002401 ORTHO05D006143 1.5e-32 143.3 126 54.0
CARHR037210 Cardamine hirsuta HOM05D002401 ORTHO05D006143 1.5e-32 143.3 117 60.7
FAN20G2779 Fragaria x ananassa HOM05D002401 ORTHO05D006143 1.5e-32 143.3 140 53.6
Manes.05G166100 Manihot esculenta HOM05D002401 ORTHO05D006143 1.5e-32 143.3 142 50.7
CsaV3_5G035090 Cucumis sativus L. HOM05D002401 ORTHO05D006143 2.0e-32 142.9 130 52.3
Potri.002G131000 Populus trichocarpa HOM05D002401 ORTHO05D006143 3.4e-32 142.1 142 50.7
Migut.N02680 Erythranthe guttata HOM05D002401 ORTHO05D006143 4.4e-32 141.7 114 61.4
PGR031G0661 Punica granatum HOM05D002401 ORTHO05D006143 7.5e-32 141.0 85 74.1
ClCG05G022050 Citrullus lanatus HOM05D002667 ORTHO05D006143 1.3e-31 140.2 129 51.2
Eucgr.H02545 Eucalyptus grandis HOM05D002401 ORTHO05D006143 1.3e-31 140.2 128 51.6
Oeu019097.1 Olea europaea HOM05D002401 ORTHO05D006143 2.9e-31 139.0 140 50.7
MELO3C012322.2 Cucumis melo HOM05D002401 ORTHO05D006143 3.7e-31 138.7 142 49.3
CAN.G371.115 Capsicum annuum HOM05D002401 ORTHO05D006143 6.4e-31 137.9 140 51.4
Cc07_g16250 Coffea canephora HOM05D002401 ORTHO05D006143 6.4e-31 137.9 111 56.8
Sopen04g033330 Solanum pennellii HOM05D002401 ORTHO05D006143 8.3e-31 137.5 96 61.5
CDE09G0871 Ceratophyllum demersum HOM05D002401 ORTHO05D006143 1.1e-30 137.1 89 67.4
CANSAT56G2411 Cannabis sativa HOM05D002401 ORTHO05D006143 1.4e-30 136.7 85 62.4
Aqoxy6G00960 Aquilegia oxysepala HOM05D002401 ORTHO05D006143 2.4e-30 136.0 86 68.6
VMungo0540G1795 Vigna mungo HOM05D002401 ORTHO05D006143 2.4e-30 136.0 140 50.7
Phvul.005G120000 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 3.2e-30 135.6 97 62.9
Lj1A1064T34 Lonicera japonica HOM05D002401 ORTHO05D006143 5.4e-30 134.8 83 69.9
Phvul.006G040300 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 7.0e-30 134.4 97 61.9
PGSC0003DMG400016886 Solanum tuberosum HOM05D002401 ORTHO05D006143 9.2e-30 134.0 115 53.9
vmacro12719 Vaccinium macrocarpon HOM05D002401 ORTHO05D006143 9.2e-30 134.0 84 66.7
Ah.11g047790 Amaranthus hybridus HOM05D000501 ORTHO05D006143 1.2e-29 133.7 111 61.3
Glyma.18G099900 Glycine max HOM05D002401 ORTHO05D006143 1.2e-29 133.7 97 63.9
Lsat_1_v5_gn_4_122901 Lactuca sativa HOM05D002401 ORTHO05D006143 1.2e-29 133.7 143 46.9
SGA_v2.0_scaffold14G07044 Striga asiatica HOM05D002401 ORTHO05D006143 2.0e-29 132.9 135 50.4
MSTRG.24312 Avicennia marina HOM05D002401 ORTHO05D006143 3.5e-29 132.1 85 68.2
Peaxi162Scf00280g00077 Petunia axillaris HOM05D002401 ORTHO05D006143 3.5e-29 132.1 82 68.3
HPP92_020226 Vanilla planifolia HOM05D002401 ORTHO05D006143 4.6e-29 131.7 134 49.3
vmacro21595 Vaccinium macrocarpon HOM05D002401 ORTHO05D006143 7.8e-29 131.0 95 65.3
MBI16_g31342_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D006143 1.0e-28 130.6 83 69.9
SalBow7G0739 Salvia bowleyana HOM05D002401 ORTHO05D006143 1.7e-28 129.8 131 48.9
PSO170G6637 Papaver somniferum HOM05D002401 ORTHO05D006143 2.3e-28 129.4 88 68.2
AUR62008526 Chenopodium quinoa HOM05D002401 ORTHO05D006143 3.0e-28 129.0 120 55.0
Lalb_Chr02g0157531 Lupinus albus HOM05D002401 ORTHO05D006143 3.9e-28 128.6 116 55.2
arahy.Tifrunner.gnm1.ann1.A6BGRK Arachis hypogaea HOM05D002401 ORTHO05D006143 5.0e-28 128.3 124 55.6
MBI16_g45778_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D006143 5.0e-28 128.3 83 68.7
Hund09910 Selenicereus undatus HOM05D002401 ORTHO05D006143 5.0e-28 128.3 127 53.5
arahy.Tifrunner.gnm1.ann1.JWFJ3V Arachis hypogaea HOM05D002401 ORTHO05D006143 6.6e-28 127.9 127 55.9
Oeu015608.1 Olea europaea HOM05D002401 ORTHO05D006143 8.6e-28 127.5 83 65.1
Nn7g38029 Nelumbo nucifera HOM05D002401 ORTHO05D006143 1.5e-27 126.7 140 50.0
arahy.Tifrunner.gnm1.ann1.PMC9AK Arachis hypogaea HOM05D002401 ORTHO05D006143 1.9e-27 126.3 126 54.8
arahy.Tifrunner.gnm1.ann1.LC5CIX Arachis hypogaea HOM05D002401 ORTHO05D006143 4.3e-27 125.2 129 54.3
Nitab4.5_0000110g0070 Nicotiana tabacum HOM05D002401 ORTHO05D006143 5.6e-27 124.8 78 70.5
Glyma.04G034800 Glycine max HOM05D002401 ORTHO05D006143 7.3e-27 124.4 116 54.3
EL10Ac5g11128 Beta vulgaris HOM05D002401 ORTHO05D006143 9.5e-27 124.0 123 54.5
AUR62021564 Chenopodium quinoa HOM05D002401 ORTHO05D006143 9.5e-27 124.0 83 68.7
HanXRQChr09g0268371 Helianthus annuus HOM05D002401 ORTHO05D006143 9.5e-27 124.0 133 45.9
HanXRQChr05g0141551 Helianthus annuus HOM05D002401 ORTHO05D006143 1.2e-26 123.6 130 45.4
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 6.2e-26 121.3 85 62.4
Sc02g0006690 Simmondsia chinensis HOM05D002401 ORTHO05D006143 1.4e-25 120.2 83 63.9
Nitab4.5_0009288g0040 Nicotiana tabacum HOM05D002401 ORTHO05D006143 2.3e-25 119.4 76 69.7
Ca_15531_v3 Cicer arietinum L. HOM05D002401 ORTHO05D006143 4.0e-25 118.6 85 63.5
TPR.G21549 Trifolium pratense HOM05D002401 ORTHO05D006143 5.2e-25 118.2 112 53.6
Medtr3g111580 Medicago truncatula HOM05D002401 ORTHO05D006143 1.5e-24 116.7 149 44.3
TPR.G12442 Trifolium pratense HOM05D002401 ORTHO05D006143 1.5e-24 116.7 85 60.0
Psat0s2724g0080 Pisum sativum HOM05D002401 ORTHO05D006143 2.6e-24 115.9 85 60.0
ECA232G3633 Erigeron canadensis HOM05D002401 ORTHO05D006143 3.4e-24 115.5 126 45.2
Psat5g144200 Pisum sativum HOM05D002401 ORTHO05D006143 3.4e-24 115.5 85 60.0
AUR62031756 Chenopodium quinoa HOM05D002401 ORTHO05D006143 7.5e-24 114.4 86 62.8
vmacro21593 Vaccinium macrocarpon HOM05D002401 ORTHO05D006143 7.5e-24 114.4 75 70.7
Os12g0596000 Oryza sativa ssp. japonica HOM05D002401 ORTHO05D006143 1.3e-23 113.6 85 56.5
Zm00001eb030760 Zea mays HOM05D002401 ORTHO05D006143 2.9e-23 112.5 130 46.2
Lj1g0004451 Lotus japonicus HOM05D002401 ORTHO05D006143 6.4e-23 111.3 98 56.1
Mapoly0078s0004 Marchantia polymorpha HOM05D002401 ORTHO05D006143 2.7e-21 105.9 137 41.6
SEGI_06323 Sequoiadendron giganteum HOM05D002401 ORTHO05D006143 3.5e-21 105.5 83 55.4
BcaC01g01116 Brassica carinata HOM05D002401 ORTHO05D006143 4.6e-21 105.1 64 68.8
AUR62036501 Chenopodium quinoa HOM05D002857 ORTHO05D007919 1.0e-20 104.0 65 70.8
Pp3c12_18570 Physcomitrium patens HOM05D002401 ORTHO05D006143 3.0e-20 102.4 128 43.0
AagrBONN_evm.TU.Sc2ySwM_344.2173 Anthoceros agrestis HOM05D002401 ORTHO05D006143 5.1e-20 101.7 79 57.0
SHI04962 Sapria himalayana HOM05D002401 ORTHO05D006143 3.3e-19 99.0 86 50.0
DCAR_019427 Daucus carota HOM05D002401 ORTHO05D006143 4.3e-19 98.6 91 52.7
SMO118G0246 Selaginella moellendorffii HOM05D002401 ORTHO05D006143 4.3e-19 98.6 85 51.8
Actinidia15286 Actinidia chinensis HOM05D001143 ORTHO05D001457 1.4e-17 93.6 50 80.0
DCAR_019493 Daucus carota HOM05D002401 ORTHO05D006143 4.0e-17 92.0 78 57.7
ATR0733G118 Amborella trichopoda HOM05D002401 ORTHO05D006143 6.8e-17 91.3 61 63.9
CBR_g38019 Chara braunii HOM05D002401 ORTHO05D006143 1.2e-16 90.5 161 36.6
C03p88310 Brassica napus HOM05D002401 ORTHO05D006143 3.9e-12 75.5 38 78.9
Cre16.g675250 Chlamydomonas reinhardtii HOM05D002401 ORTHO05D006143 3.9e-12 75.5 82 45.1
Glyma.08G314300 Glycine max HOM05D002401 ORTHO05D006143 4.3e-11 72.0 48 72.9
Solyc04g079750.4 Solanum lycopersicum HOM05D002401 ORTHO05D006143 4.7e-10 68.6 38 73.7
TPR.G10101 Trifolium pratense HOM05D002401 ORTHO05D006143 6.2e-10 68.2 96 38.5
AUR62023962 Chenopodium quinoa HOM05D002401 ORTHO05D006143 3.1e-09 65.9 41 70.7
MCO07G632 Micromonas commoda HOM05D002401 ORTHO05D006143 7.6e-08 61.2 103 35.0
Cpa.g.sc64.28 Carica papaya HOM05D002401 ORTHO05D006143 3.8e-07 58.9 32 75.0


User provided reference genes

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