Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 5.4e-209 730.7 360 100.0
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 3.3e-190 668.3 360 90.0
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.2e-170 602.4 360 79.7
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 2.8e-157 558.9 360 73.3
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.1e-156 557.0 360 73.6
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 2.6e-155 552.4 360 72.8
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 1.1e-153 547.0 360 74.4
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 2.1e-152 542.7 360 72.2
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 3.6e-152 542.0 360 71.7
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 6.1e-152 541.2 363 72.2
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 4.3e-150 535.0 360 72.5
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 5.7e-150 534.6 360 71.4
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 7.4e-150 534.3 360 71.4
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 9.7e-150 533.9 360 71.9
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 9.7e-150 533.9 360 71.4
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 9.7e-150 533.9 360 71.9
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 9.7e-150 533.9 365 71.0
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.3e-149 533.5 360 72.5
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.7e-149 533.1 360 71.1
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 4.8e-149 531.6 360 71.1
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 8.2e-149 530.8 360 71.1
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 1.1e-148 530.4 360 70.0
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.8e-148 529.6 360 71.4
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.8e-148 529.6 363 70.8
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 2.4e-148 529.3 360 70.8
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 3.1e-148 528.9 360 71.7
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 4.1e-148 528.5 359 70.5
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 9.1e-148 527.3 385 66.2
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-147 526.9 360 70.6
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 1.5e-147 526.6 360 69.2
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 2.6e-147 525.8 360 70.8
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 4.5e-147 525.0 360 70.6
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.0e-146 523.9 361 69.5
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.0e-146 523.9 360 71.1
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.7e-146 523.1 360 70.6
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.7e-146 523.1 360 69.7
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.9e-146 522.3 360 70.3
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 2.9e-146 522.3 360 70.3
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.9e-146 522.3 360 70.3
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 5.0e-146 521.5 360 70.3
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 5.0e-146 521.5 360 69.4
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 6.5e-146 521.2 360 69.7
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 6.5e-146 521.2 360 69.2
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 8.5e-146 520.8 360 70.3
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.1e-145 520.4 360 70.3
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.9e-145 519.6 361 68.7
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 2.5e-145 519.2 360 68.6
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 5.5e-145 518.1 360 70.0
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 7.2e-145 517.7 360 69.4
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 9.4e-145 517.3 357 70.9
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 3.6e-144 515.4 360 69.7
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 3.6e-144 515.4 361 69.0
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.6e-144 515.4 361 67.9
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.7e-144 515.0 361 67.9
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.7e-144 515.0 361 67.9
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 6.1e-144 514.6 364 66.8
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 7.9e-144 514.2 360 68.3
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 1.4e-143 513.5 325 74.5
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 1.8e-143 513.1 360 69.7
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 3.0e-143 512.3 360 69.4
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 3.0e-143 512.3 360 69.4
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 3.0e-143 512.3 361 69.0
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 5.1e-143 511.5 360 69.2
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 5.1e-143 511.5 360 68.3
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 5.1e-143 511.5 360 69.2
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.5e-142 510.0 362 66.6
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 1.5e-142 510.0 360 67.5
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 1.5e-142 510.0 360 69.7
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.0e-142 509.6 359 68.5
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 2.6e-142 509.2 360 67.8
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 3.3e-142 508.8 360 68.1
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 3.3e-142 508.8 364 66.2
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 4.4e-142 508.4 361 68.1
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 5.7e-142 508.1 360 68.3
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 5.7e-142 508.1 360 67.5
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 5.7e-142 508.1 350 70.0
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 7.4e-142 507.7 360 69.2
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 9.7e-142 507.3 361 67.6
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 9.7e-142 507.3 360 67.5
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 2.8e-141 505.8 360 69.2
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.3e-141 504.6 360 67.2
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 6.3e-141 504.6 360 67.5
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 4.1e-140 501.9 360 67.8
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 7.0e-140 501.1 360 66.1
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 7.0e-140 501.1 360 67.2
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 9.1e-140 500.7 390 63.8
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 1.2e-139 500.4 360 66.9
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 7.7e-139 497.7 360 67.8
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.0e-138 497.3 360 66.9
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.9e-138 495.7 356 67.1
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 8.5e-138 494.2 356 66.9
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 4.2e-137 491.9 360 65.3
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 9.4e-137 490.7 362 66.0
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 1.4e-135 486.9 356 66.9
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.4e-135 486.9 452 55.8
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 2.3e-135 486.1 360 65.6
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 5.2e-135 485.0 434 58.3
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 8.8e-135 484.2 412 61.4
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 7.4e-134 481.1 364 64.3
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.1e-132 475.7 360 64.2
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 7.0e-132 474.6 360 63.9
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 7.0e-132 474.6 360 63.3
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 7.7e-131 471.1 371 62.0
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.0e-130 470.7 333 67.9
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.8e-130 468.8 358 63.1
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 3.2e-129 465.7 360 62.2
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 3.6e-128 462.2 452 53.1
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.5e-126 456.8 356 61.2
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 4.8e-125 451.8 360 59.7
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 2.4e-124 449.5 360 60.6
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 7.7e-123 444.5 359 58.8
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 2.9e-122 442.6 386 60.1
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 5.5e-121 438.3 270 77.4
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.0e-118 429.9 519 45.7
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 3.0e-111 406.0 251 76.9
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.7e-109 399.1 327 57.2
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 2.5e-105 386.3 348 59.2
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 9.5e-105 384.4 269 68.0
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 6.0e-99 365.2 277 64.3
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.1e-92 344.4 349 52.4
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.1e-91 340.1 351 49.0
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.8e-88 329.7 241 63.5
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 4.7e-88 328.9 362 45.9
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 3.0e-74 283.1 269 56.9
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 1.5e-70 270.8 227 59.5
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.7e-69 267.3 176 69.9
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.4e-68 264.2 176 73.3
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.7e-66 257.3 203 62.1
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.7e-66 257.3 159 74.8
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 1.7e-66 257.3 162 74.7
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 4.6e-59 232.6 186 58.6
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.5e-54 217.6 346 37.9
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 4.5e-54 216.1 178 57.9
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 4.5e-46 189.5 112 78.6
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 1.1e-39 168.3 173 51.4
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 1.2e-38 164.9 106 67.9
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 5.7e-33 146.0 89 78.7
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 4.1e-31 139.8 105 68.6
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 2.5e-20 104.0 175 40.6
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 4.4e-17 93.2 62 67.7
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 7.5e-17 92.4 69 68.1
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 1.4e-15 88.2 91 48.4
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.4e-15 88.2 84 53.6
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 5.3e-15 86.3 55 70.9
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 7.7e-14 82.4 233 26.6
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 7.2e-12 75.9 46 76.1
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 1.4e-10 71.6 49 61.2
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 3.4e-09 67.0 74 48.6
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 9.8e-09 65.5 81 44.4


User provided reference genes

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