Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 1.3e-213 746.1 366 100.0
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 2.4e-172 609.0 360 79.4
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 3.5e-171 605.1 360 79.7
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.6e-155 553.1 362 70.4
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 6.6e-154 547.7 362 69.6
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 4.4e-150 535.0 362 68.0
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 5.8e-150 534.6 363 68.3
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 1.4e-148 530.0 365 68.2
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 1.9e-148 529.6 362 69.3
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 7.1e-148 527.7 362 69.3
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 6.0e-147 524.6 362 68.8
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 6.0e-147 524.6 363 67.8
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 2.3e-146 522.7 361 67.3
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 6.6e-146 521.2 362 66.6
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.1e-145 520.4 362 68.2
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.9e-145 519.6 362 67.1
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 2.5e-145 519.2 365 66.8
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 5.6e-145 518.1 362 67.1
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 5.6e-145 518.1 362 67.7
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 7.3e-145 517.7 366 66.4
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.2e-144 516.9 362 66.9
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 2.1e-144 516.2 362 68.0
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 3.6e-144 515.4 362 67.7
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 6.2e-144 514.6 362 66.0
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 1.1e-143 513.8 362 65.7
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.2e-142 510.4 362 66.9
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.5e-142 510.0 363 65.3
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.5e-142 510.0 362 64.6
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 2.6e-142 509.2 362 66.3
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 4.4e-142 508.4 362 66.9
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 7.6e-142 507.7 363 64.2
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 7.6e-142 507.7 362 65.7
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 7.6e-142 507.7 362 64.4
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 1.7e-141 506.5 387 62.3
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.7e-141 506.5 362 66.3
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 2.2e-141 506.1 360 65.8
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 2.2e-141 506.1 360 66.4
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 2.2e-141 506.1 362 64.9
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 6.4e-141 504.6 362 65.7
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 1.1e-140 503.8 361 65.9
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.4e-140 503.4 363 65.0
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 1.4e-140 503.4 361 66.2
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.9e-140 503.1 363 65.0
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.9e-140 503.1 363 65.0
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.9e-140 503.1 365 63.6
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 2.4e-140 502.7 364 63.2
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 3.2e-140 502.3 363 65.3
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 3.2e-140 502.3 363 65.3
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 3.2e-140 502.3 362 65.7
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 3.2e-140 502.3 362 64.4
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.1e-140 501.9 362 64.6
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 7.1e-140 501.1 359 65.7
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 7.1e-140 501.1 360 65.0
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 7.1e-140 501.1 363 65.3
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 1.2e-139 500.4 362 64.6
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 1.2e-139 500.4 362 64.4
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 2.1e-139 499.6 362 65.7
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.1e-139 499.6 362 64.4
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.7e-139 499.2 362 64.6
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.5e-139 498.8 362 64.1
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 4.6e-139 498.4 356 66.3
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 4.6e-139 498.4 364 64.8
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 4.6e-139 498.4 362 64.6
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 6.0e-139 498.0 362 64.1
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 6.0e-139 498.0 362 64.6
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 7.8e-139 497.7 363 65.3
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 7.8e-139 497.7 361 64.5
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.0e-138 497.3 363 62.5
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.0e-138 497.3 363 62.5
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.0e-138 497.3 363 62.5
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 1.0e-138 497.3 328 69.5
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.3e-138 496.9 362 64.4
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.3e-138 496.1 362 64.1
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 3.0e-138 495.7 364 62.4
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.0e-138 495.7 365 63.8
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 6.6e-138 494.6 362 63.5
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.5e-137 493.4 365 63.3
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 2.5e-137 492.7 362 64.1
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 4.3e-137 491.9 361 63.4
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 4.3e-137 491.9 328 68.3
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 1.2e-136 490.3 362 63.3
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.6e-136 490.0 359 63.8
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.6e-136 488.8 398 59.0
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 3.6e-136 488.8 362 63.5
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 4.7e-136 488.4 362 63.3
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 4.7e-136 488.4 365 62.5
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 8.1e-136 487.6 361 64.3
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 1.4e-135 486.9 360 63.1
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 4.0e-135 485.3 361 62.0
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 1.5e-134 483.4 362 62.2
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 9.9e-134 480.7 362 61.0
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 2.2e-133 479.6 360 62.8
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 6.4e-133 478.0 354 64.4
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.9e-132 476.5 436 55.5
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 4.6e-131 471.9 357 63.6
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.0e-130 470.7 364 61.0
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.0e-130 470.7 362 61.6
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 1.3e-130 470.3 360 60.6
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.7e-130 469.9 413 57.9
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 2.3e-130 469.5 366 61.5
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.3e-129 465.7 340 64.1
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.3e-129 465.3 454 51.8
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.6e-128 463.4 361 61.2
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 4.4e-126 455.3 371 58.5
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 7.6e-126 454.5 360 59.2
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 2.9e-125 452.6 364 58.2
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 3.8e-125 452.2 362 58.6
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 2.4e-124 449.5 454 49.8
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 8.1e-120 434.5 359 57.7
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 2.4e-119 433.0 388 57.0
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 3.1e-119 432.6 359 57.1
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 4.5e-118 428.7 365 54.0
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 4.9e-117 425.2 274 71.2
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 1.6e-115 420.2 524 43.5
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 8.4e-109 397.9 332 56.0
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 1.1e-108 397.5 254 71.3
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 4.1e-103 379.0 348 56.6
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 1.9e-100 370.2 276 62.0
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 1.1e-95 354.4 277 61.7
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.1e-92 344.4 351 48.7
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.6e-91 340.5 349 51.3
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 1.4e-87 327.4 338 48.5
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 4.5e-86 322.4 243 61.3
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 4.8e-72 275.8 273 53.1
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 2.9e-69 266.5 176 66.5
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 1.1e-68 264.6 227 56.8
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 2.3e-66 256.9 164 70.7
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.0e-65 253.8 161 70.8
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.4e-65 253.1 178 65.2
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 3.1e-63 246.5 203 58.1
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.8e-55 220.7 354 37.0
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 1.3e-53 214.5 185 54.1
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 3.8e-53 213.0 183 55.7
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.1e-44 184.9 114 74.6
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 5.4e-39 166.0 174 49.4
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 3.5e-38 163.3 106 66.0
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 2.2e-32 144.1 90 72.2
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 7.1e-31 139.0 106 64.2
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 6.6e-21 105.9 160 41.2
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 4.4e-17 93.2 77 61.0
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 7.6e-17 92.4 66 66.7
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 4.9e-16 89.7 62 61.3
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 8.4e-16 89.0 55 70.9
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 2.7e-14 84.0 89 46.1
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 8.7e-13 79.0 234 26.5
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 9.6e-12 75.5 47 74.5
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 3.1e-10 70.5 74 48.6
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 1.2e-09 68.6 49 55.1
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 3.4e-09 67.0 78 44.9


User provided reference genes

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