Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 5.6e-214 747.3 360 100.0
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 3.4e-187 658.3 362 88.1
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 2.9e-186 655.2 362 87.6
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.2e-179 633.3 362 84.8
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.2e-179 633.3 362 84.5
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 1.5e-179 632.9 363 84.6
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 4.5e-179 631.3 360 84.7
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 7.6e-179 630.6 365 83.8
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.3e-178 629.8 363 84.0
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 1.7e-178 629.4 365 83.6
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.9e-177 625.9 364 82.7
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 2.4e-177 625.5 360 83.6
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 3.5e-176 621.7 363 83.2
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 7.9e-176 620.5 359 82.5
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 1.8e-175 619.4 357 82.4
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 2.3e-175 619.0 358 83.2
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 3.9e-175 618.2 369 81.6
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 6.7e-175 617.5 360 81.9
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 4.3e-174 614.8 369 80.5
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 9.6e-174 613.6 369 81.0
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 9.6e-174 613.6 364 81.6
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 2.1e-173 612.5 357 82.9
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.4e-172 609.8 357 81.8
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.8e-172 609.4 366 79.8
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 2.4e-172 609.0 357 83.5
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 4.0e-172 608.2 357 80.4
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 6.9e-172 607.4 357 82.9
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 9.0e-172 607.1 359 79.9
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 9.0e-172 607.1 357 81.0
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 9.0e-172 607.1 361 80.9
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.2e-171 606.7 361 80.6
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 2.0e-171 605.9 360 80.0
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 3.4e-171 605.1 354 80.8
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.4e-171 605.1 357 81.8
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 4.5e-171 604.7 363 80.4
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 4.5e-171 604.7 356 81.7
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 4.5e-171 604.7 357 82.4
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 4.5e-171 604.7 367 79.3
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 4.5e-171 604.7 359 81.3
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 5.8e-171 604.4 362 80.9
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 5.8e-171 604.4 362 80.4
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 7.6e-171 604.0 359 79.4
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 1.3e-170 603.2 357 82.6
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.7e-170 602.8 357 81.0
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 2.2e-170 602.4 357 80.1
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 2.2e-170 602.4 357 82.9
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 4.9e-170 601.3 357 82.1
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 6.4e-170 600.9 359 79.9
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 8.4e-170 600.5 357 82.1
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 8.4e-170 600.5 357 82.1
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 1.1e-169 600.1 387 76.2
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 1.4e-169 599.7 362 79.3
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.4e-169 599.7 365 79.2
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.5e-169 599.0 357 81.5
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 2.5e-169 599.0 357 81.2
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.5e-169 599.0 364 78.6
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 3.2e-169 598.6 356 80.1
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.5e-169 597.8 365 77.3
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 5.5e-169 597.8 368 77.2
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 7.1e-169 597.4 362 79.6
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 7.1e-169 597.4 365 77.0
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 7.1e-169 597.4 365 77.0
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 1.6e-168 596.3 357 78.7
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.6e-168 596.3 357 80.7
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.6e-168 596.3 355 81.1
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 2.1e-168 595.9 351 82.6
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 2.7e-168 595.5 355 79.4
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 4.6e-168 594.7 360 80.3
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 7.9e-168 594.0 357 79.3
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 7.9e-168 594.0 357 79.3
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.0e-167 593.6 358 79.6
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.0e-167 593.6 354 79.9
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.8e-167 592.8 357 79.0
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 2.3e-167 592.4 358 78.8
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 3.0e-167 592.0 360 76.7
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 3.0e-167 592.0 357 79.0
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 1.5e-166 589.7 357 78.2
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 2.5e-166 589.0 364 76.9
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 3.3e-166 588.6 356 79.2
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 5.7e-166 587.8 357 77.6
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 5.7e-166 587.8 357 79.0
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 2.1e-165 585.9 355 78.3
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 2.8e-165 585.5 367 75.2
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 8.2e-165 583.9 357 78.2
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.4e-164 583.2 357 79.8
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 3.1e-164 582.0 357 78.2
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.1e-164 582.0 355 78.9
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 6.9e-164 580.9 355 77.2
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.0e-162 577.0 387 73.1
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.1e-161 573.5 421 70.5
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 3.5e-160 568.5 368 74.2
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 3.5e-160 568.5 355 75.5
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 1.1e-158 563.5 357 75.4
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.1e-158 563.5 440 66.8
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.5e-158 562.4 449 65.0
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 2.2e-157 559.3 365 75.3
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 4.1e-156 555.1 360 74.4
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 7.7e-155 550.8 351 76.1
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 1.7e-154 549.7 456 61.6
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.9e-154 548.9 331 79.5
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 5.0e-154 548.1 360 72.5
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 5.1e-151 538.1 371 68.7
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 8.8e-151 537.3 356 71.6
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 5.7e-150 534.6 362 69.3
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 7.4e-150 534.3 356 71.3
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 2.2e-149 532.7 387 70.8
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 5.3e-148 528.1 356 70.2
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.0e-146 523.9 360 68.3
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 9.4e-145 517.3 357 68.6
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 5.1e-143 511.5 274 89.1
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 6.7e-143 511.1 358 66.8
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 3.3e-142 508.8 357 65.3
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 1.5e-139 500.0 521 52.2
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 4.2e-137 491.9 355 64.8
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 5.9e-131 471.5 255 87.1
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 1.3e-125 453.8 270 80.4
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.8e-125 452.6 386 57.5
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 1.4e-124 450.3 344 68.0
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 7.7e-115 417.9 278 73.4
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 9.2e-108 394.4 345 57.4
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.1e-103 379.4 302 61.9
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 7.5e-102 374.8 378 49.2
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.7e-101 373.6 346 53.5
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 1.7e-85 320.5 271 62.4
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 2.7e-83 313.2 223 66.8
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 9.6e-81 304.7 198 74.2
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.0e-79 299.3 180 80.0
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 4.0e-79 299.3 203 70.9
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 6.8e-79 298.5 164 85.4
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 5.4e-76 288.9 176 76.7
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 2.1e-72 276.9 181 74.0
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.3e-66 257.7 348 42.8
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 4.2e-60 236.1 175 64.0
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.7e-53 214.2 118 86.4
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 2.8e-48 196.8 169 60.4
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 1.9e-44 184.1 106 77.4
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.8e-40 170.2 107 79.4
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 5.0e-37 159.5 92 84.8
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 5.5e-28 129.4 150 50.7
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 9.7e-25 118.6 88 68.2
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 5.0e-21 106.3 77 67.5
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 5.0e-21 106.3 112 54.5
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 4.7e-19 99.8 62 71.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 4.7e-19 99.8 225 30.2
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.4e-18 98.2 55 78.2
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 1.1e-15 88.6 48 85.4
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.0e-14 84.3 83 51.8
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 4.5e-14 83.2 47 76.6
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 2.8e-08 63.9 74 44.6


User provided reference genes

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