Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 4.8e-102 374.4 175 100.0
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 4.5e-60 235.0 174 67.8
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 7.7e-60 234.2 174 66.7
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 8.5e-59 230.7 175 64.6
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 1.1e-58 230.3 174 66.7
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 1.5e-58 229.9 174 66.1
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 5.5e-58 228.0 175 64.6
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 9.4e-58 227.3 175 64.6
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 1.4e-56 223.4 175 63.4
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 1.4e-56 223.4 175 64.6
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 1.4e-56 223.4 175 63.4
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.8e-56 223.0 175 63.4
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 4.0e-56 221.9 172 64.0
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 5.2e-56 221.5 173 63.6
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 5.2e-56 221.5 174 63.2
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.5e-55 219.9 175 61.1
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.5e-55 219.9 175 61.1
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 1.5e-55 219.9 173 62.4
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 1.5e-55 219.9 175 62.3
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 4.4e-55 218.4 175 60.6
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 5.7e-55 218.0 174 60.9
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 5.7e-55 218.0 174 60.9
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 5.7e-55 218.0 174 60.9
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 5.7e-55 218.0 175 61.7
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 7.5e-55 217.6 173 61.8
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.3e-54 216.9 174 60.3
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 1.3e-54 216.9 172 61.0
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 2.2e-54 216.1 175 60.6
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 2.2e-54 216.1 175 61.1
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 2.2e-54 216.1 174 60.3
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 2.2e-54 216.1 175 60.0
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 8.3e-54 214.2 173 60.1
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 1.1e-53 213.8 172 62.2
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 1.1e-53 213.8 176 61.4
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 1.4e-53 213.4 175 60.0
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 1.4e-53 213.4 175 60.0
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 1.8e-53 213.0 177 61.0
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 1.8e-53 213.0 175 60.0
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 3.1e-53 212.2 175 59.4
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 1.6e-52 209.9 175 58.9
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 2.0e-52 209.5 174 58.0
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 2.0e-52 209.5 172 60.5
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 2.7e-52 209.1 175 59.4
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 4.5e-52 208.4 173 58.4
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 4.5e-52 208.4 175 60.6
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 5.9e-52 208.0 174 58.0
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 7.7e-52 207.6 174 58.6
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 7.7e-52 207.6 226 50.0
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 7.7e-52 207.6 173 59.5
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 7.7e-52 207.6 172 59.3
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 1.0e-51 207.2 175 59.4
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 1.3e-51 206.8 175 60.0
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 1.7e-51 206.5 174 59.2
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 2.2e-51 206.1 173 59.0
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 2.9e-51 205.7 175 57.7
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 2.9e-51 205.7 174 59.8
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 3.8e-51 205.3 174 60.9
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 5.0e-51 204.9 172 58.1
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 1.1e-50 203.8 175 57.7
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 2.5e-50 202.6 173 56.6
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 3.2e-50 202.2 175 56.6
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 4.2e-50 201.8 173 57.2
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 5.5e-50 201.4 172 57.6
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 7.2e-50 201.1 173 57.8
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 7.2e-50 201.1 177 57.6
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 9.4e-50 200.7 174 57.5
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 9.4e-50 200.7 177 57.6
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 9.4e-50 200.7 177 57.6
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.2e-49 200.3 174 56.9
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 1.6e-49 199.9 170 58.2
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 1.6e-49 199.9 175 56.6
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 1.6e-49 199.9 174 58.6
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 6.1e-49 198.0 173 57.8
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 1.4e-48 196.8 179 57.5
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 6.8e-48 194.5 172 56.4
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.2e-47 193.7 172 55.8
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 1.2e-47 193.7 173 56.6
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 2.2e-46 189.5 173 53.8
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 3.7e-46 188.7 174 55.2
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 1.6e-44 183.3 173 52.0
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 4.5e-44 181.8 173 52.0
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 7.7e-44 181.0 178 55.6
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 1.9e-42 176.4 173 52.0
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.5e-42 176.0 172 51.2
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 9.5e-42 174.1 170 52.9
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 1.6e-41 173.3 171 50.3
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.1e-41 172.9 172 50.6
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 5.7e-39 164.9 174 46.6
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 5.7e-39 164.9 174 46.6
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 5.7e-39 164.9 174 46.6
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 2.2e-38 162.9 174 46.6
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 2.2e-38 162.9 174 46.0
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 2.2e-38 162.9 174 46.0
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 4.9e-38 161.8 84 85.7
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 4.9e-38 161.8 175 48.6
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 2.4e-37 159.5 174 46.0
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 2.4e-37 159.5 174 46.6
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 2.4e-37 159.5 169 46.2
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 4.1e-37 158.7 84 82.1
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 1.2e-36 157.1 174 45.4
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 2.0e-36 156.4 172 44.8
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 2.7e-36 156.0 172 45.9
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 2.7e-36 156.0 174 44.8
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 4.6e-36 155.2 174 44.8
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 5.9e-36 154.8 174 47.7
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 1.2e-31 140.6 178 42.1
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 2.6e-31 139.4 175 42.3
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 3.4e-31 139.0 81 75.3
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 1.3e-30 137.1 176 42.0
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 1.1e-29 134.0 76 78.9
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 4.1e-29 132.1 173 41.6
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 5.4e-29 131.7 172 41.3
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 7.0e-29 131.3 167 42.5
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 1.1e-26 124.0 65 83.1
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 2.5e-26 122.9 145 42.8
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 4.3e-26 122.1 172 39.0
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 1.1e-18 97.4 167 36.5
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 3.6e-17 92.4 56 64.3
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 1.3e-14 84.0 48 79.2
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 1.7e-14 83.6 60 58.3
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 2.2e-14 83.2 115 44.3
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 4.9e-14 82.0 48 75.0


User provided reference genes

Program Settings