Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p004437 Quercus lobata HOM05D003599 ORTHO05D004221 3.1e-57 224.9 117 100.0
QL04p003920 Quercus lobata HOM05D003599 ORTHO05D004221 7.2e-46 187.2 112 86.6
QL04p004288 Quercus lobata HOM05D003599 ORTHO05D004221 7.2e-46 187.2 112 86.6
QL04p004701 Quercus lobata HOM05D000311 ORTHO05D000183 5.2e-44 181.0 112 84.8
QL04p003614 Quercus lobata HOM05D003599 ORTHO05D004221 2.4e-41 172.2 112 81.2
Dinv43904 Davidia involucrata HOM05D003599 ORTHO05D004221 2.3e-39 165.6 115 73.9
Haze_03250 Corylus avellana HOM05D003599 ORTHO05D004221 3.8e-39 164.9 112 76.8
ClCG10G012550 Citrullus lanatus HOM05D003599 ORTHO05D004221 8.0e-37 157.1 113 76.1
vmacro13647 Vaccinium macrocarpon HOM05D003599 ORTHO05D004221 1.4e-36 156.4 112 73.2
CsaV3_3G032340 Cucumis sativus L. HOM05D003599 ORTHO05D004221 1.8e-36 156.0 113 75.2
Glyma.08G152400 Glycine max HOM05D003599 ORTHO05D004221 3.0e-36 155.2 111 70.3
Phvul.005G037000 Phaseolus vulgaris HOM05D003599 ORTHO05D004221 4.0e-36 154.8 111 72.1
Rhsim07G0053800 Rhododendron simsii HOM05D003599 ORTHO05D004221 4.0e-36 154.8 112 72.3
MELO3C023955.2 Cucumis melo HOM05D003599 ORTHO05D004221 6.8e-36 154.1 109 77.1
Ca_26231_v3 Cicer arietinum L. HOM05D003599 ORTHO05D004221 3.4e-35 151.8 124 65.3
CANSAT56G1134 Cannabis sativa HOM05D003599 ORTHO05D004221 5.7e-35 151.0 112 72.3
Prupe.2G007800 Prunus persica HOM05D003599 ORTHO05D004221 5.7e-35 151.0 108 75.0
Lalb_Chr25g0283241 Lupinus albus HOM05D003599 ORTHO05D004221 1.7e-34 149.4 112 67.9
CiPaw.13G001900 Carya illinoinensis HOM05D003599 ORTHO05D004221 2.2e-34 149.1 112 73.2
Eucgr.J01252 Eucalyptus grandis HOM05D003599 ORTHO05D004221 2.2e-34 149.1 110 70.9
Lalb_Chr20g0108081 Lupinus albus HOM05D003599 ORTHO05D004221 3.7e-34 148.3 111 67.6
MD02G1316400 Malus domestica HOM05D003599 ORTHO05D004221 6.3e-34 147.5 112 72.3
Sed0009971 Sechium edule HOM05D003599 ORTHO05D004221 8.3e-34 147.1 112 72.3
Manes.07G003200 Manihot esculenta HOM05D003599 ORTHO05D004221 1.1e-33 146.7 111 70.3
Glyma.15G271800 Glycine max HOM05D003599 ORTHO05D004221 1.4e-33 146.4 111 67.6
Lj3g0018349 Lotus japonicus HOM05D003599 ORTHO05D004221 1.4e-33 146.4 114 71.9
VMungo1080G1621 Vigna mungo HOM05D003599 ORTHO05D004221 1.4e-33 146.4 109 68.8
Sed0001465 Sechium edule HOM05D003599 ORTHO05D004221 2.4e-33 145.6 112 72.3
MD07G1005500 Malus domestica HOM05D003599 ORTHO05D004221 3.1e-33 145.2 113 72.6
Ciclev10030514m.g Citrus clementina HOM05D003599 ORTHO05D004221 4.1e-33 144.8 111 69.4
Cpa.g.sc234.1 Carica papaya HOM05D003599 ORTHO05D004221 7.0e-33 144.1 113 68.1
Psat5g207160 Pisum sativum HOM05D003599 ORTHO05D004221 9.2e-33 143.7 116 68.1
TWI73G0659 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 9.2e-33 143.7 106 75.5
arahy.Tifrunner.gnm1.ann1.V362W9 Arachis hypogaea HOM05D003599 ORTHO05D004221 1.2e-32 143.3 112 67.0
arahy.Tifrunner.gnm1.ann1.X69RYV Arachis hypogaea HOM05D003599 ORTHO05D004221 1.2e-32 143.3 112 67.0
Cc02_g27450 Coffea canephora HOM05D003599 ORTHO05D004221 4.5e-32 141.4 111 69.4
Oeu034893.1 Olea europaea HOM05D003599 ORTHO05D004221 7.8e-32 140.6 112 67.0
GSVIVG01032046001 Vitis vinifera HOM05D003599 ORTHO05D004221 1.7e-31 139.4 110 66.4
TPR.G12253 Trifolium pratense HOM05D003599 ORTHO05D004221 2.9e-31 138.7 127 62.2
Gohir.D08G167000 Gossypium hirsutum HOM05D003599 ORTHO05D004221 5.0e-31 137.9 111 67.6
Gorai.004G174400 Gossypium raimondii HOM05D003599 ORTHO05D004221 5.0e-31 137.9 111 67.6
Nn7g36074 Nelumbo nucifera HOM05D003599 ORTHO05D004221 8.6e-31 137.1 109 67.9
TWI53G1897 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 8.6e-31 137.1 114 68.4
PSO384G0358 Papaver somniferum HOM05D003599 ORTHO05D004221 2.5e-30 135.6 106 70.8
Actinidia31044 Actinidia chinensis HOM05D003599 ORTHO05D004221 4.3e-30 134.8 95 74.7
PSO339G0158 Papaver somniferum HOM05D003599 ORTHO05D004221 4.3e-30 134.8 106 70.8
Duzib268G0099 Durio zibethinus HOM05D003599 ORTHO05D004221 5.6e-30 134.4 110 64.5
Sabra09G0048500 Salix brachista HOM05D003599 ORTHO05D004221 7.3e-30 134.0 114 65.8
Nitab4.5_0004883g0020 Nicotiana tabacum HOM05D003599 ORTHO05D004221 2.1e-29 132.5 112 61.6
RcHm_v2.0_Chr4g0410621 Rosa chinensis HOM05D003599 ORTHO05D004221 3.6e-29 131.7 114 66.7
Atru.chr11.2631 Acer truncatum HOM05D003599 ORTHO05D004221 6.1e-29 131.0 115 62.6
MSTRG.17057 Avicennia marina HOM05D003599 ORTHO05D004221 6.1e-29 131.0 112 66.1
Lj7C568T3 Lonicera japonica HOM05D003599 ORTHO05D004221 6.1e-29 131.0 112 69.6
Potri.009G065300 Populus trichocarpa HOM05D003599 ORTHO05D004221 6.1e-29 131.0 114 64.9
Medtr3g027610 Medicago truncatula HOM05D003599 ORTHO05D004221 8.0e-29 130.6 122 63.1
Nitab4.5_0001542g0140 Nicotiana tabacum HOM05D003599 ORTHO05D004221 1.0e-28 130.2 112 59.8
Migut.B01342 Erythranthe guttata HOM05D003599 ORTHO05D004221 3.0e-28 128.6 119 64.7
MBI01_g43277_MAGBIO Magnolia biondii HOM05D003599 ORTHO05D004221 3.0e-28 128.6 109 62.4
QL04p003768 Quercus lobata HOM05D003599 ORTHO05D004221 5.2e-28 127.9 112 66.1
Sopen01g033750 Solanum pennellii HOM05D003599 ORTHO05D004221 5.2e-28 127.9 108 62.0
Thecc.01G414600 Theobroma cacao HOM05D003599 ORTHO05D004221 5.2e-28 127.9 110 64.5
Potri.001G271200 Populus trichocarpa HOM05D003599 ORTHO05D004221 4.4e-27 124.8 114 60.5
PGSC0003DMG400025257 Solanum tuberosum HOM05D003599 ORTHO05D004221 4.4e-27 124.8 108 61.1
CAN.G1393.20 Capsicum annuum HOM05D003599 ORTHO05D004221 7.5e-27 124.0 112 59.8
MBI01_g15744_MAGBIO Magnolia biondii HOM05D003599 ORTHO05D004221 1.7e-26 122.9 113 58.4
Sc11g0009360 Simmondsia chinensis HOM05D003599 ORTHO05D004221 4.9e-26 121.3 102 61.8
COL.COLO4_23904 Corchorus olitorius HOM05D003599 ORTHO05D004221 6.4e-26 120.9 110 63.6
Sabra16G0166600 Salix brachista HOM05D003599 ORTHO05D004221 1.1e-25 120.2 115 59.1
Peaxi162Scf00058g00215 Petunia axillaris HOM05D003599 ORTHO05D004221 1.4e-25 119.8 112 58.9
THA.LOC104801983 Tarenaya hassleriana HOM05D003599 ORTHO05D004221 3.2e-25 118.6 114 59.6
Lj3g0008997 Lotus japonicus HOM05D003599 ORTHO05D004221 7.0e-25 117.5 112 61.6
ATR0605G051 Amborella trichopoda HOM05D003599 ORTHO05D004221 9.2e-25 117.1 115 59.1
Aa31LG10G7230 Aethionema arabicum HOM05D003599 ORTHO05D004221 1.6e-24 116.3 113 58.4
Lsat_1_v5_gn_1_110320 Lactuca sativa HOM05D003599 ORTHO05D004221 2.7e-24 115.5 101 65.3
DCAR_029635 Daucus carota HOM05D003599 ORTHO05D004221 7.8e-24 114.0 114 57.9
unitig_0.g1375 Utricularia gibba HOM05D003599 ORTHO05D004221 1.7e-23 112.8 114 59.6
FAN17G0189 Fragaria x ananassa HOM05D003599 ORTHO05D004221 5.0e-23 111.3 113 59.3
FvH4_4g12380 Fragaria vesca HOM05D003599 ORTHO05D004221 1.1e-22 110.2 113 58.4
FAN12G0010 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.1e-22 110.2 113 58.4
FAN12G2088 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.1e-22 110.2 113 58.4
FAN22G1903 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.1e-22 110.2 113 58.4
FAN07G2146 Fragaria x ananassa HOM05D003599 ORTHO05D004221 2.5e-22 109.0 113 57.5
CDE05G2426 Ceratophyllum demersum HOM05D003599 ORTHO05D004221 3.3e-22 108.6 89 66.3
SEGI_10833 Sequoiadendron giganteum HOM05D003599 ORTHO05D004221 3.3e-22 108.6 94 59.6
QL04p003812 Quercus lobata HOM05D003599 ORTHO05D004221 1.2e-21 106.7 71 77.5
VMungo1215G1265 Vigna mungo HOM05D003599 ORTHO05D004221 1.6e-21 106.3 77 70.1
CSS0018905 Camellia sinensis var. sinensis HOM05D003599 ORTHO05D004221 2.1e-21 105.9 114 61.4
HanXRQChr01g0017271 Helianthus annuus HOM05D003599 ORTHO05D004221 2.8e-21 105.5 103 61.2
AT3G52140 Arabidopsis thaliana HOM05D003599 ORTHO05D004221 3.6e-21 105.1 105 58.1
AL5G32710 Arabidopsis lyrata HOM05D003599 ORTHO05D004221 6.2e-21 104.4 105 58.1
arahy.Tifrunner.gnm1.ann1.SKP1EQ Arachis hypogaea HOM05D003599 ORTHO05D004221 8.0e-21 104.0 106 57.5
HPP92_003004 Vanilla planifolia HOM05D003599 ORTHO05D004221 2.3e-20 102.4 96 61.5
CARHR161880 Cardamine hirsuta HOM05D003599 ORTHO05D004221 3.1e-20 102.1 105 56.2
Gohir.A08G146100 Gossypium hirsutum HOM05D003599 ORTHO05D004221 3.1e-20 102.1 111 56.8
HPP92_003005 Vanilla planifolia HOM05D003599 ORTHO05D004221 3.1e-20 102.1 96 61.5
arahy.Tifrunner.gnm1.ann1.7I49QA Arachis hypogaea HOM05D003599 ORTHO05D004221 4.0e-20 101.7 108 56.5
Carub.0005s1848 Capsella rubella HOM05D003599 ORTHO05D004221 4.0e-20 101.7 105 56.2
unitig_61.g26447 Utricularia gibba HOM05D003599 ORTHO05D004221 2.6e-19 99.0 113 55.8
Migut.N01485 Erythranthe guttata HOM05D003599 ORTHO05D004221 1.3e-18 96.7 109 56.9
Thhalv10010065m.g Eutrema salsugineum HOM05D003599 ORTHO05D004221 2.9e-18 95.5 115 50.4
AUR62009368 Chenopodium quinoa HOM05D003599 ORTHO05D004221 2.4e-17 92.4 102 52.9
AUR62023049 Chenopodium quinoa HOM05D003599 ORTHO05D004221 5.4e-17 91.3 102 52.9
TPR.G12134 Trifolium pratense HOM05D003599 ORTHO05D004221 1.2e-16 90.1 61 73.8
Actinidia32321 Actinidia chinensis HOM05D003599 ORTHO05D004221 1.6e-16 89.7 59 76.3
SHI28922 Sapria himalayana HOM05D003599 ORTHO05D004221 2.1e-16 89.4 106 50.0
Actinidia28306 Actinidia chinensis HOM05D003599 ORTHO05D004221 6.0e-16 87.8 82 61.0
Sp5g10140 Schrenkiella parvula HOM05D003599 ORTHO05D004221 6.6e-15 84.3 108 50.9
Aqoxy1G00213 Aquilegia oxysepala HOM05D003599 ORTHO05D004221 1.1e-14 83.6 108 42.6
Mapoly0060s0041 Marchantia polymorpha HOM05D003599 ORTHO05D004221 1.1e-14 83.6 98 52.0
ECA248G3304 Erigeron canadensis HOM05D003599 ORTHO05D004221 1.9e-14 82.8 101 48.5
Actinidia31688 Actinidia chinensis HOM05D003599 ORTHO05D004221 2.5e-14 82.4 71 60.6
Ah.10g024830 Amaranthus hybridus HOM05D003599 ORTHO05D004221 2.5e-14 82.4 105 50.5
A04p07220 Brassica napus HOM05D003599 ORTHO05D004221 5.6e-14 81.3 104 48.1
C04p40780 Brassica napus HOM05D003599 ORTHO05D004221 5.6e-14 81.3 106 49.1
BolC4t25662H Brassica oleracea HOM05D003599 ORTHO05D004221 5.6e-14 81.3 106 49.1
BraA04t16417Z Brassica rapa HOM05D003599 ORTHO05D004221 5.6e-14 81.3 104 48.1
PGR044G0248 Punica granatum HOM05D003599 ORTHO05D004221 7.3e-14 80.9 117 47.0
Os02g0717400 Oryza sativa ssp. japonica HOM05D003599 ORTHO05D004221 9.5e-14 80.5 95 51.6
CDE05G3296 Ceratophyllum demersum HOM05D003599 ORTHO05D004221 3.6e-13 78.6 64 64.1
BraA09t39983Z Brassica rapa HOM05D003599 ORTHO05D004221 8.1e-13 77.4 113 46.9
Zm00001eb189030 Zea mays HOM05D003599 ORTHO05D004221 1.1e-12 77.0 109 45.9
SalBow4G2031 Salvia bowleyana HOM05D003599 ORTHO05D004221 5.2e-12 74.7 114 46.5
Zm00001eb252790 Zea mays HOM05D003599 ORTHO05D004221 6.8e-12 74.3 97 49.5
Dinv43470 Davidia involucrata HOM05D003599 ORTHO05D004221 2.6e-11 72.4 112 42.9
C08p27410 Brassica napus HOM05D003599 ORTHO05D004221 3.4e-11 72.0 94 50.0
QL93p0073_0296 Quercus lobata HOM05D003599 ORTHO05D004221 5.8e-11 71.2 37 91.9
A09p45200 Brassica napus HOM05D003599 ORTHO05D004221 9.9e-11 70.5 85 54.1
Pp3c16_5830 Physcomitrium patens HOM05D003599 ORTHO05D004221 1.3e-10 70.1 98 50.0
EL10Ac2g04309 Beta vulgaris HOM05D003599 ORTHO05D004221 3.2e-09 65.5 103 45.6
QL04p004391 Quercus lobata HOM05D003599 ORTHO05D004221 1.3e-07 60.1 67 56.7
SMO141G0154 Selaginella moellendorffii HOM05D003599 ORTHO05D004221 5.1e-07 58.2 80 46.2
BcaC02g09276 Brassica carinata HOM05D003599 ORTHO05D004221 8.6e-07 57.4 110 40.0


User provided reference genes

Program Settings