Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 1.2e-242 842.8 428 100.0
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 4.7e-167 591.7 375 81.3
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 1.4e-166 590.1 375 81.1
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 5.3e-163 578.2 377 79.8
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 7.2e-160 567.8 374 79.7
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 9.4e-160 567.4 377 79.0
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 2.3e-158 562.8 376 78.5
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 3.3e-157 558.9 384 77.6
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 4.8e-156 555.1 373 76.4
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 1.1e-155 553.9 376 78.2
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 1.4e-155 553.5 373 75.9
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 7.0e-155 551.2 380 77.1
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 1.6e-154 550.1 376 76.9
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 3.5e-154 548.9 374 76.5
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 5.9e-154 548.1 374 76.5
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 5.9e-154 548.1 376 76.6
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 7.7e-154 547.7 375 76.8
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 6.5e-153 544.7 366 78.1
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 1.5e-152 543.5 385 74.8
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 4.2e-152 542.0 376 74.5
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 1.0e-150 537.3 382 74.9
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 8.8e-150 534.3 386 75.1
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 1.2e-149 533.9 381 74.3
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.5e-149 533.5 378 75.9
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 5.7e-149 531.6 377 75.1
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 5.7e-149 531.6 377 75.1
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 9.7e-149 530.8 372 75.3
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 1.3e-148 530.4 374 75.1
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 2.2e-148 529.6 374 74.1
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 8.2e-148 527.7 339 80.5
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 1.8e-147 526.6 367 75.7
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 5.3e-147 525.0 379 73.4
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 9.1e-147 524.2 374 74.1
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 2.7e-146 522.7 384 72.9
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 5.9e-146 521.5 374 74.6
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 7.7e-146 521.2 374 75.1
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 7.7e-146 521.2 374 75.1
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 1.3e-145 520.4 377 74.0
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 1.3e-145 520.4 377 74.0
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 1.7e-145 520.0 382 73.8
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 1.7e-145 520.0 368 75.0
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 2.2e-145 519.6 384 73.7
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 2.9e-145 519.2 362 74.3
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 3.8e-145 518.8 376 73.9
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 3.8e-145 518.8 362 76.8
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 5.0e-145 518.5 372 75.3
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 8.5e-145 517.7 372 74.2
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.1e-144 517.3 377 73.7
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 1.5e-144 516.9 376 73.7
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 2.5e-144 516.2 369 75.1
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 2.5e-144 516.2 376 72.3
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 3.2e-144 515.8 381 72.7
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 4.2e-144 515.4 371 74.7
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 5.5e-144 515.0 341 78.0
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 7.2e-144 514.6 370 74.3
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 7.2e-144 514.6 368 74.2
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 9.4e-144 514.2 376 73.4
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 9.4e-144 514.2 368 74.5
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 9.4e-144 514.2 373 72.9
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 2.7e-143 512.7 370 75.1
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 6.1e-143 511.5 334 79.6
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 8.0e-143 511.1 371 73.9
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 1.0e-142 510.8 371 75.5
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 1.4e-142 510.4 371 73.0
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 4.0e-142 508.8 385 72.5
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 1.5e-141 506.9 362 72.9
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 5.7e-141 505.0 370 74.3
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 1.3e-140 503.8 329 78.7
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 1.7e-140 503.4 347 75.5
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 2.2e-140 503.1 370 73.0
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 2.4e-139 499.6 337 78.9
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 2.4e-139 499.6 355 74.6
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 5.4e-139 498.4 368 74.5
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 1.2e-138 497.3 399 69.2
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 1.6e-138 496.9 373 71.3
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 2.0e-138 496.5 379 70.2
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 2.0e-138 496.5 380 71.1
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.0e-138 496.5 337 78.6
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 3.8e-137 492.3 358 74.0
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 2.5e-136 489.6 404 67.3
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 4.2e-136 488.8 385 69.9
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.2e-136 488.8 355 74.4
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 4.7e-135 485.3 377 69.2
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 1.8e-134 483.4 382 68.3
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 2.3e-134 483.0 388 67.0
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 5.2e-134 481.9 351 72.4
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 3.4e-133 479.2 375 67.7
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 3.4e-133 479.2 377 69.2
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 1.8e-131 473.4 278 86.3
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 4.1e-131 472.2 327 76.8
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 5.4e-131 471.9 373 68.4
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.6e-130 470.3 385 65.5
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 2.7e-130 469.5 368 68.5
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 1.3e-129 467.2 325 75.7
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 3.9e-129 465.7 324 76.2
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.9e-128 463.4 360 68.3
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 1.9e-128 463.4 374 68.4
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 1.8e-126 456.8 331 73.4
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.0e-126 455.7 363 70.0
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 1.2e-122 444.1 360 67.8
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 2.0e-117 426.8 369 65.9
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 1.7e-116 423.7 384 63.3
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 1.3e-113 414.1 289 74.0
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 2.3e-113 413.3 317 68.1
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 2.5e-112 409.8 233 88.0
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 5.6e-112 408.7 363 61.2
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 1.7e-108 397.1 326 63.8
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 1.7e-105 387.1 288 68.1
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 9.9e-101 371.3 291 67.0
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 6.0e-98 362.1 288 68.8
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 5.1e-89 332.4 206 80.6
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 3.8e-84 316.2 284 59.5
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 6.4e-84 315.5 279 62.4
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 1.3e-81 307.8 263 57.8
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 5.3e-78 295.8 232 70.3
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 7.6e-77 292.0 229 69.4
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 7.6e-77 292.0 253 57.7
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 3.0e-73 280.0 210 71.9
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 2.9e-68 263.5 185 71.9
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 9.0e-62 241.9 157 79.6
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 2.5e-56 223.8 190 65.8
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 6.9e-54 215.7 192 64.6
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 3.8e-52 209.9 186 64.0
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 5.0e-52 209.5 175 62.3
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 2.5e-51 207.2 118 87.3
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 2.1e-50 204.1 186 62.9
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 7.4e-48 195.7 109 88.1
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 1.4e-46 191.4 137 75.2
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 6.1e-34 149.4 108 70.4
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 2.7e-29 134.0 245 35.9
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 1.9e-27 127.9 238 33.6
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.6e-24 117.5 156 44.9
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 2.6e-24 117.5 179 46.4
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 8.3e-23 112.5 164 38.4
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 2.4e-22 110.9 241 31.5
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 3.1e-22 110.5 77 75.3
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 2.0e-21 107.8 111 59.5
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 2.1e-18 97.8 50 94.0
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 8.0e-18 95.9 66 71.2
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 7.5e-16 89.4 89 58.4


User provided reference genes

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