Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 5.9e-258 893.6 443 100.0
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 4.1e-243 844.3 443 95.3
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 1.5e-240 835.9 443 94.4
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 4.2e-219 764.6 443 86.7
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 2.8e-215 751.9 443 85.3
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.7e-212 742.7 443 84.2
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 7.6e-205 717.2 444 81.3
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 5.4e-203 711.1 443 80.6
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 5.6e-200 701.0 440 80.2
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 2.8e-199 698.7 442 77.6
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 2.4e-198 695.7 443 78.1
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 6.9e-198 694.1 444 78.8
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 9.0e-198 693.7 444 78.8
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 3.4e-197 691.8 444 77.7
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 5.8e-197 691.0 444 77.0
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 2.9e-196 688.7 443 78.3
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 3.8e-196 688.3 443 77.2
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 4.9e-196 688.0 444 77.5
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 4.9e-196 688.0 446 76.9
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 1.4e-195 686.4 443 78.3
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 1.4e-195 686.4 443 78.1
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 1.9e-195 686.0 446 76.5
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 2.5e-195 685.6 443 78.1
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 4.2e-195 684.9 445 77.3
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 1.2e-194 683.3 449 76.6
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 2.1e-194 682.6 445 76.4
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 2.7e-194 682.2 444 77.9
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 3.5e-194 681.8 445 76.9
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 3.5e-194 681.8 443 77.0
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 7.9e-194 680.6 445 76.9
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 7.9e-194 680.6 442 77.6
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 7.9e-194 680.6 446 75.6
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 1.3e-193 679.9 445 76.6
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 1.8e-193 679.5 444 76.1
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 5.1e-193 677.9 439 75.9
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 6.7e-193 677.6 445 76.6
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 5.6e-192 674.5 441 75.5
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 7.4e-192 674.1 446 75.8
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 9.6e-192 673.7 445 77.1
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 1.3e-191 673.3 446 75.3
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 2.8e-191 672.2 449 76.4
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 3.7e-191 671.8 460 76.3
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 6.2e-191 671.0 443 75.8
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 8.2e-191 670.6 448 76.1
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 8.2e-191 670.6 445 75.5
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 2.4e-190 669.1 443 74.9
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 5.3e-190 667.9 440 75.0
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 9.0e-190 667.2 446 74.9
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 9.0e-190 667.2 446 75.8
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 5.8e-189 664.5 441 74.6
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 7.6e-189 664.1 442 74.9
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 1.7e-188 662.9 444 76.4
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 8.4e-188 660.6 439 74.7
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.1e-187 660.2 441 75.1
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.1e-187 660.2 388 83.0
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 1.4e-187 659.8 447 76.1
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.4e-187 659.8 441 74.6
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 1.9e-187 659.4 441 75.1
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 3.2e-187 658.7 443 75.6
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 3.2e-187 658.7 474 73.2
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 3.2e-187 658.7 465 71.0
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 4.2e-187 658.3 447 74.3
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 5.5e-187 657.9 443 74.7
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 7.1e-187 657.5 443 74.5
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 9.3e-187 657.1 399 81.5
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 2.1e-186 656.0 453 74.0
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 2.1e-186 656.0 453 74.0
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 6.0e-186 654.4 447 74.0
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 5.1e-185 651.4 476 70.2
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 1.1e-184 650.2 455 73.0
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 1.5e-184 649.8 445 74.4
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 5.7e-184 647.9 453 72.4
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 5.7e-184 647.9 494 69.0
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 1.6e-183 646.4 446 74.0
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 6.3e-183 644.4 402 79.6
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 2.4e-182 642.5 393 78.1
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 6.9e-182 641.0 378 82.0
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 2.9e-180 635.6 398 80.4
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 1.1e-179 633.6 441 72.1
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 4.2e-179 631.7 406 77.8
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 7.2e-179 630.9 446 72.2
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 1.2e-178 630.2 382 81.2
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 2.7e-178 629.0 444 72.5
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 7.9e-178 627.5 382 80.4
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 1.4e-177 626.7 441 70.7
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 1.4e-177 626.7 442 71.5
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 2.3e-177 625.9 441 70.3
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 3.0e-177 625.5 441 70.3
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 2.0e-176 622.9 441 69.6
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 4.3e-176 621.7 441 69.8
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 4.3e-176 621.7 445 70.1
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 5.7e-176 621.3 441 69.8
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 2.2e-175 619.4 442 70.8
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 2.8e-175 619.0 391 77.2
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 4.8e-175 618.2 443 70.4
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 1.1e-174 617.1 374 79.4
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 1.1e-174 617.1 374 79.4
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 4.1e-174 615.1 381 78.0
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 9.1e-174 614.0 486 66.5
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 2.6e-173 612.5 374 78.9
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 3.4e-173 612.1 383 77.0
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 4.5e-173 611.7 382 77.2
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 4.5e-173 611.7 382 77.2
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 5.9e-173 611.3 388 77.8
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 7.7e-173 610.9 374 78.6
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 7.7e-173 610.9 374 78.6
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 1.4e-171 606.7 374 78.1
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 1.6e-170 603.2 403 75.7
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.0e-169 600.5 443 69.5
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 3.9e-169 598.6 511 65.0
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 1.5e-165 586.6 354 83.6
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 1.5e-160 570.1 388 73.5
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 2.6e-157 559.3 382 73.6
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 6.3e-151 538.1 406 66.3
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.2e-149 533.9 373 69.2
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 2.5e-147 526.2 393 65.1
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 9.4e-147 524.2 353 74.2
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 8.0e-146 521.2 446 63.9
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 1.4e-145 520.4 443 62.3
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 2.8e-135 486.1 373 63.5
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 1.8e-134 483.4 308 76.3
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 6.4e-127 458.4 365 60.8
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 2.8e-122 443.0 255 84.3
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 3.1e-121 439.5 382 56.5
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 8.9e-121 438.0 310 72.3
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 7.5e-120 434.9 329 68.4
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 5.8e-112 408.7 269 76.6
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 3.4e-104 382.9 263 68.8
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 5.4e-102 375.6 422 51.2
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 9.3e-102 374.8 261 71.6
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 8.7e-92 341.7 441 46.3
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 8.1e-90 335.1 178 92.1
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 2.9e-87 326.6 181 89.0
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 8.4e-79 298.5 170 85.9
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 3.5e-77 293.1 190 77.9
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 1.3e-68 264.6 220 65.5
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 1.3e-68 264.6 220 65.5
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 2.2e-58 230.7 158 72.8
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 4.7e-53 213.0 119 82.4
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-52 211.1 156 66.0
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.6e-48 197.2 143 68.5
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.2e-45 188.3 191 55.0
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 1.2e-37 161.8 94 81.9
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.4e-36 158.3 380 31.6
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.4e-36 158.3 193 52.8
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 5.2e-36 156.4 94 79.8
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 4.1e-33 146.7 151 53.6
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 2.2e-31 141.0 77 85.7
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 3.6e-29 133.7 121 57.9
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 1.8e-28 131.3 168 47.0
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 2.8e-26 124.0 142 50.0
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 5.6e-22 109.8 81 70.4
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 1.0e-15 89.0 50 84.0
Pp3s32_480 Physcomitrium patens HOM05D003605 ORTHO05D309393 1.0e-12 79.0 273 24.5
PRCOL_00006728 Prasinoderma coloniale HOM05D004678 ORTHO05D333305 5.2e-12 76.6 416 25.0
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 3.4e-11 73.9 38 78.9
Lsat_1_v5_gn_7_11140 Lactuca sativa HOM05D002771 ORTHO05D003078 1.3e-10 72.0 256 27.0
VMungo1309G1294 Vigna mungo HOM05D002771 ORTHO05D003078 1.4e-09 68.6 244 23.4
CBR_g36553 Chara braunii HOM05D003605 ORTHO05D003078 3.2e-09 67.4 163 28.8
Phvul.009G122800 Phaseolus vulgaris HOM05D002771 ORTHO05D003078 1.2e-08 65.5 278 23.0
Cpa.g.sc36.33 Carica papaya HOM05D002771 ORTHO05D003078 2.7e-08 64.3 252 23.0
Lalb_Chr21g0309431 Lupinus albus HOM05D002771 ORTHO05D003078 2.7e-08 64.3 254 25.2
Lj1A20T48 Lonicera japonica HOM05D002771 ORTHO05D003078 3.5e-08 63.9 233 24.5
Pp3c20_8270 Physcomitrium patens HOM05D004697 ORTHO05D006015 3.5e-08 63.9 306 23.2
DCAR_012361 Daucus carota HOM05D002771 ORTHO05D003078 4.6e-08 63.5 231 23.8
SMO351G0219 Selaginella moellendorffii HOM05D003605 ORTHO05D004292 6.0e-08 63.2 191 30.4
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 1.0e-07 62.4 29 93.1
AUR62038977 Chenopodium quinoa HOM05D000658 ORTHO05D000826 1.3e-07 62.0 294 23.8
Mapoly0192s0009 Marchantia polymorpha HOM05D004697 ORTHO05D006015 1.3e-07 62.0 310 22.6
Mapoly0162s0009 Marchantia polymorpha HOM05D002771 ORTHO05D003078 2.3e-07 61.2 254 23.6
ECA236G0232 Erigeron canadensis HOM05D002771 ORTHO05D003078 3.9e-07 60.5 259 23.6
Pp3s46_180 Physcomitrium patens HOM05D002465 ORTHO05D028651 1.1e-06 58.9 224 23.7
SEGI_17088 Sequoiadendron giganteum HOM05D000418 ORTHO05D000317 1.5e-06 58.5 217 24.0
SEGI_07279 Sequoiadendron giganteum HOM05D000418 ORTHO05D000317 1.9e-06 58.2 218 25.2
SEGI_32577 Sequoiadendron giganteum HOM05D000418 ORTHO05D000317 1.9e-06 58.2 218 24.3
CAN.G933.13 Capsicum annuum HOM05D002015 ORTHO05D017741 2.5e-06 57.8 57 50.9
Lsat_1_v5_gn_8_133781 Lactuca sativa HOM05D000658 ORTHO05D000826 3.3e-06 57.4 352 25.3
AUR62036044 Chenopodium quinoa HOM05D000658 ORTHO05D000826 4.3e-06 57.0 249 25.3
SHI09057 Sapria himalayana HOM05D004678 ORTHO05D005880 5.6e-06 56.6 72 43.1
AL1G10930 Arabidopsis lyrata HOM05D000418 ORTHO05D000317 9.5e-06 55.8 251 23.9


User provided reference genes

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