Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 5.6e-110 401.0 207 100.0
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 8.2e-77 290.8 174 83.3
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 3.4e-75 285.4 174 82.2
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.6e-67 260.0 174 72.4
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.3e-66 256.9 174 72.4
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 9.4e-65 250.8 188 65.4
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 4.0e-63 245.4 174 70.1
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 5.2e-63 245.0 174 68.4
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 8.8e-63 244.2 174 69.5
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.5e-62 243.4 178 68.5
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.5e-62 243.4 178 68.5
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.8e-61 239.2 174 66.1
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 2.8e-61 239.2 173 71.7
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.7e-61 238.8 177 68.4
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 4.8e-61 238.4 173 72.3
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 6.3e-61 238.0 177 68.4
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 2.4e-60 236.1 173 71.7
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 3.1e-60 235.7 174 67.2
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 3.1e-60 235.7 178 65.7
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 4.1e-60 235.3 177 67.8
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 4.1e-60 235.3 174 65.5
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 5.3e-60 235.0 179 67.6
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 5.3e-60 235.0 174 64.9
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.6e-59 233.4 178 68.0
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.6e-59 233.4 174 68.4
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.0e-59 233.0 174 67.8
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 5.9e-59 231.5 174 66.7
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 7.7e-59 231.1 178 68.0
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.3e-58 230.3 174 67.8
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.3e-58 230.3 173 65.9
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.3e-58 230.3 177 66.7
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 1.7e-58 229.9 178 67.4
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.7e-58 229.9 173 68.2
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.7e-58 229.9 173 65.3
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 2.9e-58 229.2 174 64.9
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 3.8e-58 228.8 173 67.6
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 5.0e-58 228.4 173 64.2
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 5.0e-58 228.4 173 65.3
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 8.5e-58 227.6 173 64.7
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 8.5e-58 227.6 173 65.9
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.1e-57 227.3 173 64.7
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.1e-57 227.3 178 66.3
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.1e-57 227.3 177 63.8
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.5e-57 226.9 176 65.9
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 1.5e-57 226.9 173 67.1
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.5e-57 226.9 173 67.6
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.2e-57 225.7 173 65.3
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 5.5e-57 224.9 174 66.1
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 5.5e-57 224.9 174 66.1
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 7.2e-57 224.6 174 65.5
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 7.2e-57 224.6 174 65.5
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 2.1e-56 223.0 174 64.9
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 2.1e-56 223.0 174 64.9
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 3.6e-56 222.2 172 64.0
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 3.6e-56 222.2 173 65.3
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 4.7e-56 221.9 173 66.5
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 4.7e-56 221.9 173 66.5
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 4.7e-56 221.9 174 63.8
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 6.1e-56 221.5 179 65.4
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 6.1e-56 221.5 173 67.1
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 8.0e-56 221.1 174 63.2
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 8.0e-56 221.1 173 67.1
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.0e-55 220.7 173 63.0
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.8e-55 219.9 173 62.4
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.3e-55 219.5 174 63.8
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 3.0e-55 219.2 174 63.2
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 3.0e-55 219.2 174 63.2
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.0e-55 218.8 173 61.8
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.2e-54 217.2 173 65.9
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 2.6e-54 216.1 173 61.3
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 2.6e-54 216.1 173 65.3
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 4.4e-54 215.3 178 65.2
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 5.7e-54 214.9 173 59.0
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.3e-53 213.8 173 64.7
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 2.2e-53 213.0 173 60.1
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 2.2e-53 213.0 173 64.7
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 2.2e-53 213.0 179 57.5
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 2.8e-53 212.6 178 56.7
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 3.7e-53 212.2 174 60.3
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.7e-53 212.2 178 56.2
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 6.3e-53 211.5 173 61.3
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-52 210.7 201 54.7
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.1e-52 210.7 174 59.8
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.8e-52 209.9 173 59.5
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 4.1e-52 208.8 173 62.4
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 5.4e-52 208.4 173 63.0
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 9.1e-52 207.6 173 59.5
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 1.6e-51 206.8 174 64.4
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 2.7e-51 206.1 173 63.6
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.0e-50 204.1 174 58.6
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 2.3e-50 203.0 174 58.0
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 2.3e-50 203.0 174 58.0
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 6.5e-50 201.4 122 83.6
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.1e-49 200.7 173 61.8
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.5e-49 200.3 174 58.0
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 7.2e-49 198.0 175 57.7
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.2e-48 197.2 173 60.7
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.6e-48 196.8 165 62.4
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 2.1e-48 196.4 176 58.5
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.1e-48 196.4 171 57.3
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 3.6e-48 195.7 175 58.9
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.7e-48 195.3 173 59.5
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.0e-47 194.1 173 56.1
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 4.0e-47 192.2 183 55.7
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 5.2e-47 191.8 174 53.4
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 8.3e-45 184.5 174 51.1
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 8.3e-45 184.5 153 56.9
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.4e-44 183.7 173 54.9
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 2.4e-44 183.0 153 56.9
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.2e-43 180.6 117 77.8
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.2e-43 180.6 178 50.6
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.6e-43 180.3 180 52.8
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 3.5e-43 179.1 178 50.0
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 2.3e-42 176.4 178 48.9
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.5e-41 173.7 118 73.7
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.9e-41 173.3 142 66.9
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 2.5e-41 172.9 174 49.4
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 7.3e-41 171.4 178 48.3
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 2.1e-40 169.9 178 46.6
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 6.8e-39 164.9 178 46.1
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 8.9e-39 164.5 178 46.1
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.6e-38 162.9 178 46.1
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.4e-38 162.2 125 60.8
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.7e-37 160.2 178 44.4
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.9e-37 159.5 133 62.4
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 2.9e-37 159.5 175 46.9
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 7.8e-35 151.4 121 60.3
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.3e-34 150.6 160 49.4
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 3.9e-34 149.1 179 44.7
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.9e-33 146.7 113 60.2
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 4.3e-33 145.6 124 53.2
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 9.5e-33 144.4 162 43.2
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.6e-32 142.5 117 58.1
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 3.1e-31 139.4 168 41.7
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.0e-31 139.0 116 60.3
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 3.4e-30 136.0 155 51.6
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 5.4e-28 128.6 80 82.5
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 4.0e-23 112.5 118 44.9
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 8.9e-23 111.3 74 78.4
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.7e-21 105.9 102 49.0
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 3.0e-18 96.3 86 54.7
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 3.1e-15 86.3 44 93.2
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.0e-07 59.3 42 66.7


User provided reference genes

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